PycoMeth
MethComp summary report generated on 16/07/20 with pycoMeth 0.4.14
Overall summary
| Total intervals | Insufficient effect size | Insufficient samples | Non-significant pvalue | Significant pvalue |
|---|---|---|---|---|
| 266,285 | 201,365 | 54,136 | 7,252 | 3,532 |
Methylation category counts by sample for significant CpG intervals
Methylation log-likelihood ratio by significant CpG interval
Distribution of CpG methylation log-likelihood ratio for significant CpG intervals
Distribution of significant CpG intervals by chromosomic intervals
Distance from CpG Islands to closest Gene TSS
Top significant differentially methylated intervals
| rank | detailled report | pvalue | chromosome | start | end | Number of nearby TSS | closest tx id | closest tx name | closest tx biotype | distance to tss |
|---|---|---|---|---|---|---|---|---|---|---|
| #1 | report link | 1.081882e-60 | 15 | 13014693 | 13015794 | 26 | ensorlt00000004176 | protein_coding | 0 | |
| #2 | report link | 7.391533e-58 | 16 | 26220047 | 26221325 | 10 | ensorlt00000019438 | sh3bp5b-201 | protein_coding | -24958 |
| #3 | report link | 1.164849e-56 | 17 | 316390 | 318610 | 5 | ensorlt00000002667 | protein_coding | -155 | |
| #4 | report link | 5.370468e-55 | 11 | 27686928 | 27688355 | 3 | ensorlt00000017935 | protein_coding | -21358 | |
| #5 | report link | 1.197991e-53 | 4 | 7874048 | 7875618 | 12 | ensorlt00000006287 | onecut3a-201 | protein_coding | -11370 |
| #6 | report link | 1.656703e-47 | 15 | 1565040 | 1565987 | 13 | ensorlt00000023980 | galm-201 | protein_coding | 12910 |
| #7 | report link | 2.346619e-44 | 2 | 23361417 | 23362425 | 4 | ensorlt00000007888 | gart-201 | protein_coding | -38910 |
| #8 | report link | 2.906511e-43 | 2 | 12169442 | 12171060 | 3 | ensorlt00000028404 | protein_coding | -21573 | |
| #9 | report link | 4.079874e-43 | 8 | 450569 | 451548 | 25 | ensorlt00000033385 | protein_coding | 0 | |
| #10 | report link | 9.427526e-43 | 8 | 23224550 | 23225428 | 31 | ensorlt00000020885 | dnase1-201 | protein_coding | -3599 |
| #11 | report link | 1.814302e-41 | 2 | 3660038 | 3660922 | 7 | ensorlt00000030756 | protein_coding | 1339 | |
| #12 | report link | 3.173365e-41 | 22 | 1816785 | 1817685 | 40 | ensorlt00000040061 | tc2n-202 | protein_coding | 3476 |
| #13 | report link | 4.469221e-41 | 16 | 7720134 | 7721846 | 20 | ensorlt00000030918 | protein_coding | 0 | |
| #14 | report link | 5.372299e-41 | 5 | 19638728 | 19639909 | 3 | ensorlt00000012721 | ptprga-201 | protein_coding | -42024 |
| #15 | report link | 3.333253e-40 | 14 | 24222331 | 24223586 | 17 | ensorlt00000017345 | pgap2-201 | protein_coding | 2381 |
| #16 | report link | 8.858287e-40 | 20 | 15042642 | 15043458 | 10 | ensorlt00000009283 | myrip-201 | protein_coding | 13518 |
| #17 | report link | 1.233043e-39 | 3 | 309650 | 310584 | 18 | ensorlt00000032145 | protein_coding | 3012 | |
| #18 | report link | 2.966968e-38 | 19 | 1948176 | 1949405 | 19 | ensorlt00000036726 | protein_coding | -2370 | |
| #19 | report link | 1.751530e-36 | 14 | 29614617 | 29615705 | 8 | ensorlt00000041944 | sgcd-201 | protein_coding | 8035 |
| #20 | report link | 2.108064e-36 | 22 | 2405753 | 2407192 | 27 | ensorlt00000027844 | tbpl2-202 | protein_coding | 0 |
| #21 | report link | 8.055972e-36 | 16 | 7663486 | 7664331 | 21 | ensorlt00000046836 | chsy1-201 | protein_coding | -33723 |
| #22 | report link | 1.095765e-35 | 9 | 1939074 | 1940052 | 19 | ensorlt00000000515 | protein_coding | 725 | |
| #23 | report link | 2.176873e-35 | 17 | 48535 | 49910 | 0 | ||||
| #24 | report link | 3.023720e-35 | 2 | 22706556 | 22707650 | 17 | ensorlt00000007125 | cdadc1-201 | protein_coding | 5505 |
| #25 | report link | 3.724676e-35 | 2 | 23324373 | 23325538 | 19 | ensorlt00000007888 | gart-201 | protein_coding | -1866 |
| #26 | report link | 3.724676e-35 | 12 | 2187537 | 2190115 | 15 | ensorlt00000001441 | protein_coding | -10253 | |
| #27 | report link | 1.635272e-34 | 5 | 30060867 | 30062266 | 12 | ensorlt00000034046 | protein_coding | -778 | |
| #28 | report link | 5.251965e-34 | 6 | 1003683 | 1004493 | 4 | ensorlt00000023961 | ptprz1a-201 | protein_coding | 53144 |
| #29 | report link | 1.863059e-33 | 3 | 7956996 | 7957867 | 0 | ||||
| #30 | report link | 5.937177e-33 | 14 | 29286331 | 29287419 | 9 | ensorlt00000019460 | galnt10-201 | protein_coding | -6650 |
| #31 | report link | 1.288572e-32 | 7 | 26640756 | 26641574 | 2 | ensorlt00000028663 | protein_coding | 74898 | |
| #32 | report link | 1.549304e-32 | 6 | 4948049 | 4949056 | 12 | ensorlt00000043528 | protein_coding | 0 | |
| #33 | report link | 2.090096e-32 | 9 | 1940281 | 1941248 | 19 | ensorlt00000000515 | protein_coding | 0 | |
| #34 | report link | 6.273924e-32 | 14 | 19955750 | 19956691 | 7 | ensorlt00000031151 | rps6ka4-202 | protein_coding | 14624 |
| #35 | report link | 8.909609e-32 | 6 | 2209392 | 2211073 | 6 | ensorlt00000028066 | protein_coding | 916 | |
| #36 | report link | 1.370060e-31 | 1 | 1608911 | 1609767 | 12 | ensorlt00000000072 | protein_coding | -4370 | |
| #37 | report link | 2.041176e-31 | 11 | 14611139 | 14611909 | 17 | ensorlt00000007402 | si:ch73-160i9.1-201 | protein_coding | 912 |
| #38 | report link | 3.351376e-31 | 18 | 19963184 | 19964018 | 10 | ensorlt00000033449 | si:ch211-200p22.4-203 | protein_coding | 35228 |
| #39 | report link | 2.559044e-30 | 24 | 10286328 | 10287069 | 16 | ensorlt00000030196 | mfsd4b-201 | protein_coding | 0 |
| #40 | report link | 5.839936e-30 | 1 | 28861433 | 28862812 | 21 | ensorlt00000015172 | gnav1-201 | protein_coding | 3270 |
| #41 | report link | 2.063833e-29 | 1 | 28858118 | 28859215 | 20 | ensorlt00000015172 | gnav1-201 | protein_coding | 6867 |
| #42 | report link | 3.618471e-28 | 3 | 16474087 | 16474976 | 21 | ensorlt00000005943 | grk1-201 | protein_coding | -3223 |
| #43 | report link | 5.413529e-28 | 23 | 3850204 | 3850968 | 11 | ensorlt00000011959 | arntl2-201 | protein_coding | 8784 |
| #44 | report link | 7.711212e-28 | 15 | 29821056 | 29822141 | 28 | ensorlt00000037347 | mypn-202 | protein_coding | -11292 |
| #45 | report link | 1.383236e-27 | 13 | 383208 | 383975 | 9 | ensorlt00000032832 | sst1.1-201 | protein_coding | 485 |
| #46 | report link | 1.485527e-27 | 8 | 21261846 | 21262796 | 18 | ensorlt00000024432 | protein_coding | -5983 | |
| #47 | report link | 1.517193e-27 | 10 | 1395471 | 1396245 | 15 | ensorlt00000030488 | protein_coding | -24754 | |
| #48 | report link | 1.858976e-27 | 23 | 22979232 | 22979976 | 18 | ensorlt00000021719 | kcnmb4-201 | protein_coding | 2437 |
| #49 | report link | 2.468255e-27 | 16 | 27924435 | 27925464 | 25 | ensorlt00000037928 | rnf183-201 | protein_coding | -741 |
| #50 | report link | 2.468255e-27 | 21 | 28550521 | 28551558 | 13 | ensorlt00000040597 | pgap1-202 | protein_coding | 408 |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37