CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#50 21 28550521 28551558 1037 12 30 2.46825e-27
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
408 ensorlt00000040597 sorlg00000018243 pgap1-202 21 28551966 28564640 + mRNA protein_coding
-713 ensorlt00000044798 sorlg00000022432 21 28548687 28549808 - mRNA protein_coding
-3149 ensorlt00000022850 sorlg00000018243 pgap1-201 21 28547372 28564640 + mRNA protein_coding
-3170 ensorlt00000024708 sorlg00000028215 tyw5-202 21 28540095 28547351 - mRNA protein_coding
-6914 ensorlt00000022842 sorlg00000018239 maip1-201 21 28543607 28547351 + mRNA protein_coding
-7231 ensorlt00000042490 sorlg00000028215 tyw5-201 21 28538633 28543290 - mRNA protein_coding
-29054 ensorlt00000031131 sorlg00000024134 21 28521467 28538559 + mRNA protein_coding
-44392 ensorlt00000043255 sorlg00000024134 21 28506129 28538612 + mRNA protein_coding
-44392 ensorlt00000035063 sorlg00000024134 21 28506129 28538612 + mRNA protein_coding
-44392 ensorlt00000022840 sorlg00000024134 21 28506129 28538612 + mRNA protein_coding
48370 ensorlt00000027731 sorlg00000026117 21 28599928 28605326 + mRNA protein_coding
-61655 ensorlt00000022839 sorlg00000018237 21 28484059 28488866 - mRNA protein_coding
-80812 ensorlt00000030616 sorlg00000026425 21 28468358 28469709 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37