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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #35 | 6 | 2209392 | 2211073 | 1681 | 11 | 55 | 8.90961e-32 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 916 | ensorlt00000028066 | sorlg00000024800 | 6 | 2208558 | 2211989 | - | mRNA | protein_coding | |
| -11983 | ensorlt00000024773 | sorlg00000019951 | lrrk2-201 | 6 | 2138866 | 2197409 | - | mRNA | protein_coding |
| 33517 | ensorlt00000045881 | sorlg00000022008 | 6 | 2244590 | 2247357 | + | mRNA | protein_coding | |
| 60664 | ensorlt00000024762 | sorlg00000019937 | zgc:103499-201 | 6 | 2271737 | 2273890 | + | mRNA | protein_coding |
| -92796 | ensorlt00000024821 | sorlg00000019988 | slc6a15-201 | 6 | 2116596 | 2136596 | + | mRNA | protein_coding |
| 94755 | ensorlt00000027967 | sorlg00000028369 | 6 | 2304565 | 2305828 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37