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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #5 | 4 | 7874048 | 7875618 | 1570 | 12 | 42 | 1.19799e-53 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -11370 | ensorlt00000006287 | sorlg00000004983 | onecut3a-201 | 4 | 7862678 | 7878384 | + | mRNA | protein_coding |
| 20599 | ensorlt00000006332 | sorlg00000005022 | atp8b3-201 | 4 | 7878425 | 7896217 | - | mRNA | protein_coding |
| 30206 | ensorlt00000031831 | sorlg00000030341 | 4 | 7905824 | 7912103 | + | mRNA | protein_coding | |
| -39011 | ensorlt00000006270 | sorlg00000004973 | foxq2-201 | 4 | 7835037 | 7837130 | + | mRNA | protein_coding |
| -41900 | ensorlt00000006266 | sorlg00000004970 | pias4a-201 | 4 | 7819692 | 7832148 | - | mRNA | protein_coding |
| 54013 | ensorlt00000006341 | sorlg00000005032 | lingo3a-201 | 4 | 7927802 | 7929631 | - | mRNA | protein_coding |
| -58064 | ensorlt00000006224 | sorlg00000004940 | map2k2a-201 | 4 | 7809313 | 7815984 | - | mRNA | protein_coding |
| -67885 | ensorlt00000046293 | sorlg00000028662 | zbtb7a-201 | 4 | 7798326 | 7806163 | - | mRNA | protein_coding |
| -89315 | ensorlt00000035303 | sorlg00000004923 | tcf3b-201 | 4 | 7765170 | 7784733 | - | mRNA | protein_coding |
| -89337 | ensorlt00000006201 | sorlg00000004923 | tcf3b-202 | 4 | 7767436 | 7784711 | - | mRNA | protein_coding |
| -89337 | ensorlt00000031862 | sorlg00000004923 | tcf3b-203 | 4 | 7767436 | 7784711 | - | mRNA | protein_coding |
| 95623 | ensorlt00000046472 | sorlg00000025930 | org-201 | 4 | 7965094 | 7971241 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37