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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #48 | 23 | 22979232 | 22979976 | 744 | 11 | 24 | 1.85898e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 2437 | ensorlt00000021719 | sorlg00000017367 | kcnmb4-201 | 23 | 22982413 | 23003483 | + | mRNA | protein_coding |
| -13041 | ensorlt00000021713 | sorlg00000017361 | cnot2-203 | 23 | 22966191 | 22973692 | + | mRNA | protein_coding |
| -15938 | ensorlt00000035794 | sorlg00000017361 | cnot2-202 | 23 | 22963294 | 22978404 | + | mRNA | protein_coding |
| -17795 | ensorlt00000037938 | sorlg00000023963 | 23 | 22957103 | 22961437 | - | mRNA | protein_coding | |
| -18102 | ensorlt00000040908 | sorlg00000017361 | cnot2-201 | 23 | 22961130 | 22978404 | + | mRNA | protein_coding |
| -20927 | ensorlt00000042228 | sorlg00000027073 | 23 | 22958305 | 22963215 | + | mRNA | protein_coding | |
| -47154 | ensorlt00000021697 | sorlg00000017348 | dyrk2-201 | 23 | 22932078 | 22949529 | + | mRNA | protein_coding |
| -48037 | ensorlt00000021692 | sorlg00000017343 | 23 | 22919415 | 22931195 | - | mRNA | protein_coding | |
| -59710 | ensorlt00000021688 | sorlg00000017339 | 23 | 22907221 | 22919522 | - | mRNA | protein_coding | |
| 67450 | ensorlt00000033926 | sorlg00000017385 | ptprb-201 | 23 | 23020146 | 23047426 | - | mRNA | protein_coding |
| 74051 | ensorlt00000046123 | sorlg00000017385 | ptprb-203 | 23 | 23021292 | 23054027 | - | mRNA | protein_coding |
| 74587 | ensorlt00000021744 | sorlg00000017385 | ptprb-202 | 23 | 23021292 | 23054563 | - | mRNA | protein_coding |
| -75275 | ensorlt00000043668 | sorlg00000017329 | 23 | 22892799 | 22903957 | - | mRNA | protein_coding | |
| -75275 | ensorlt00000028700 | sorlg00000017329 | 23 | 22892963 | 22903957 | - | mRNA | protein_coding | |
| -75275 | ensorlt00000021675 | sorlg00000017329 | 23 | 22892799 | 22903957 | - | mRNA | protein_coding | |
| -75275 | ensorlt00000035791 | sorlg00000017329 | 23 | 22892799 | 22903957 | - | mRNA | protein_coding | |
| -85103 | ensorlt00000044338 | sorlg00000028312 | 23 | 22894129 | 22895715 | + | mRNA | protein_coding | |
| 94486 | ensorlt00000021748 | sorlg00000017389 | ptprr-201 | 23 | 23054584 | 23074462 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37