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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #10 | 8 | 23224550 | 23225428 | 878 | 12 | 29 | 9.42753e-43 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -3599 | ensorlt00000020885 | sorlg00000016693 | dnase1-201 | 8 | 23220951 | 23226539 | + | mRNA | protein_coding |
| 7323 | ensorlt00000020895 | sorlg00000016704 | eci1-201 | 8 | 23226933 | 23232751 | - | mRNA | protein_coding |
| -7936 | ensorlt00000036038 | sorlg00000016682 | nat15-201 | 8 | 23209796 | 23216614 | - | mRNA | protein_coding |
| -10397 | ensorlt00000020871 | sorlg00000016682 | nat15-202 | 8 | 23209805 | 23214153 | - | mRNA | protein_coding |
| 12868 | ensorlt00000045455 | sorlg00000016708 | 8 | 23238296 | 23245914 | + | mRNA | protein_coding | |
| 14016 | ensorlt00000020902 | sorlg00000016708 | 8 | 23239444 | 23248941 | + | mRNA | protein_coding | |
| 14016 | ensorlt00000035391 | sorlg00000016708 | 8 | 23239444 | 23247843 | + | mRNA | protein_coding | |
| 14016 | ensorlt00000033670 | sorlg00000016708 | 8 | 23239444 | 23248941 | + | mRNA | protein_coding | |
| 14061 | ensorlt00000035858 | sorlg00000016708 | 8 | 23239489 | 23249852 | + | mRNA | protein_coding | |
| 16127 | ensorlt00000040644 | sorlg00000016708 | 8 | 23241555 | 23249799 | + | mRNA | protein_coding | |
| -33879 | ensorlt00000037447 | sorlg00000027715 | carhsp1-201 | 8 | 23184214 | 23190671 | - | mRNA | protein_coding |
| -45525 | ensorlt00000020863 | sorlg00000016675 | 8 | 23157529 | 23179025 | - | mRNA | protein_coding | |
| 45959 | ensorlt00000029013 | sorlg00000025723 | 8 | 23271387 | 23274725 | + | mRNA | protein_coding | |
| 45959 | ensorlt00000037792 | sorlg00000025723 | 8 | 23271387 | 23274725 | + | mRNA | protein_coding | |
| 46393 | ensorlt00000032326 | sorlg00000025723 | 8 | 23271821 | 23273615 | + | mRNA | protein_coding | |
| -61899 | ensorlt00000038325 | sorlg00000016675 | 8 | 23161828 | 23162651 | - | mRNA | protein_coding | |
| 73452 | ensorlt00000020927 | sorlg00000016728 | 8 | 23280811 | 23298880 | - | mRNA | protein_coding | |
| 76148 | ensorlt00000029109 | sorlg00000016728 | 8 | 23276479 | 23301576 | - | mRNA | protein_coding | |
| 76148 | ensorlt00000033402 | sorlg00000016728 | 8 | 23276479 | 23301576 | - | mRNA | protein_coding | |
| 77402 | ensorlt00000020968 | sorlg00000016761 | aldh16a1-201 | 8 | 23302830 | 23320952 | + | mRNA | protein_coding |
| -77528 | ensorlt00000020848 | sorlg00000016661 | prpsap2-202 | 8 | 23147022 | 23152583 | + | mRNA | protein_coding |
| 78951 | ensorlt00000034350 | sorlg00000016761 | aldh16a1-202 | 8 | 23304379 | 23323108 | + | mRNA | protein_coding |
| 78951 | ensorlt00000037762 | sorlg00000016761 | aldh16a1-203 | 8 | 23304379 | 23323108 | + | mRNA | protein_coding |
| -80874 | ensorlt00000036035 | sorlg00000016661 | prpsap2-201 | 8 | 23143676 | 23157508 | + | mRNA | protein_coding |
| -84642 | ensorlt00000029263 | sorlg00000016641 | caskin1-203 | 8 | 23027167 | 23139908 | - | mRNA | protein_coding |
| -84642 | ensorlt00000042809 | sorlg00000016641 | caskin1-206 | 8 | 23027167 | 23139908 | - | mRNA | protein_coding |
| -84642 | ensorlt00000039418 | sorlg00000016641 | caskin1-205 | 8 | 23027167 | 23139908 | - | mRNA | protein_coding |
| -84642 | ensorlt00000020828 | sorlg00000016641 | caskin1-204 | 8 | 23027167 | 23139908 | - | mRNA | protein_coding |
| 99228 | ensorlt00000020975 | sorlg00000027266 | 8 | 23324656 | 23331885 | + | mRNA | protein_coding | |
| 99228 | ensorlt00000020971 | sorlg00000027266 | 8 | 23324656 | 23340776 | + | mRNA | protein_coding | |
| 99228 | ensorlt00000020972 | sorlg00000027266 | 8 | 23324656 | 23340776 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37