CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#25 2 23324373 23325538 1165 12 36 3.72468e-35
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
-1866 ensorlt00000007888 sorlg00000006275 gart-201 2 23313034 23322507 - mRNA protein_coding
-31849 ensorlt00000032912 sorlg00000028237 2 23291361 23292524 - mRNA protein_coding
-34183 ensorlt00000007813 sorlg00000006216 2 23286187 23290190 - mRNA protein_coding
-41154 ensorlt00000007807 sorlg00000006210 2 23270364 23283219 - mRNA protein_coding
-64040 ensorlt00000007796 sorlg00000024129 2 23260333 23267964 + mRNA protein_coding
-66689 ensorlt00000036795 sorlg00000024129 2 23257684 23271878 + mRNA protein_coding
-73023 ensorlt00000031726 sorlg00000006194 2 23251350 23259135 + mRNA protein_coding
-73023 ensorlt00000033433 sorlg00000006194 2 23251350 23256310 + mRNA protein_coding
-73023 ensorlt00000043729 sorlg00000006194 2 23251350 23256310 + mRNA protein_coding
-73023 ensorlt00000035108 sorlg00000006194 2 23251350 23256310 + mRNA protein_coding
-73023 ensorlt00000043890 sorlg00000006194 2 23251350 23256310 + mRNA protein_coding
-73023 ensorlt00000007789 sorlg00000006194 2 23251350 23256310 + mRNA protein_coding
-73393 ensorlt00000031087 sorlg00000006194 2 23250980 23256310 + mRNA protein_coding
-76319 ensorlt00000044153 sorlg00000006194 2 23248054 23258916 + mRNA protein_coding
-76490 ensorlt00000033097 sorlg00000006194 2 23247883 23256310 + mRNA protein_coding
-77995 ensorlt00000031706 sorlg00000006194 2 23246378 23256310 + mRNA protein_coding
-84350 ensorlt00000011113 sorlg00000006182 2 23240023 23248234 + mRNA protein_coding
-84576 ensorlt00000007778 sorlg00000006182 2 23239797 23247184 + mRNA protein_coding
-87708 ensorlt00000035200 sorlg00000025289 2 23234134 23236665 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37