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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #37 | 11 | 14611139 | 14611909 | 770 | 12 | 22 | 2.04118e-31 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 912 | ensorlt00000007402 | sorlg00000005883 | si:ch73-160i9.1-201 | 11 | 14601378 | 14612821 | - | mRNA | protein_coding |
| -5514 | ensorlt00000043573 | sorlg00000005883 | si:ch73-160i9.1-202 | 11 | 14601378 | 14605625 | - | mRNA | protein_coding |
| 17282 | ensorlt00000040699 | sorlg00000029494 | 11 | 14629191 | 14639498 | + | mRNA | protein_coding | |
| -21544 | ensorlt00000007375 | sorlg00000005862 | slc39a7-201 | 11 | 14589595 | 14597033 | + | mRNA | protein_coding |
| 23171 | ensorlt00000037812 | sorlg00000029494 | 11 | 14635080 | 14639498 | + | mRNA | protein_coding | |
| 29930 | ensorlt00000007420 | sorlg00000005901 | si:ch211-171h4.3-201 | 11 | 14641839 | 14647014 | + | mRNA | protein_coding |
| -53304 | ensorlt00000007352 | sorlg00000005843 | mfsd2ab-201 | 11 | 14557835 | 14570612 | + | mRNA | protein_coding |
| 58761 | ensorlt00000007466 | sorlg00000005937 | necap1-202 | 11 | 14659820 | 14670670 | - | mRNA | protein_coding |
| 59814 | ensorlt00000007463 | sorlg00000005937 | necap1-201 | 11 | 14659820 | 14671723 | - | mRNA | protein_coding |
| 59987 | ensorlt00000039400 | sorlg00000022106 | zgc:194578-201 | 11 | 14671896 | 14682483 | + | mRNA | protein_coding |
| 60650 | ensorlt00000037831 | sorlg00000022106 | zgc:194578-204 | 11 | 14672559 | 14682483 | + | mRNA | protein_coding |
| 60650 | ensorlt00000031760 | sorlg00000022106 | zgc:194578-205 | 11 | 14672559 | 14682483 | + | mRNA | protein_coding |
| 60650 | ensorlt00000042327 | sorlg00000022106 | zgc:194578-203 | 11 | 14672559 | 14689140 | + | mRNA | protein_coding |
| 60650 | ensorlt00000040473 | sorlg00000022106 | zgc:194578-202 | 11 | 14672559 | 14699173 | + | mRNA | protein_coding |
| 77036 | ensorlt00000007480 | sorlg00000005946 | si:ch211-232m10.6-201 | 11 | 14688945 | 14693859 | + | mRNA | protein_coding |
| 89824 | ensorlt00000007496 | sorlg00000005957 | rcvrn3-201 | 11 | 14697355 | 14701733 | - | mRNA | protein_coding |
| -96715 | ensorlt00000036868 | sorlg00000024045 | myclb-201 | 11 | 14505595 | 14514424 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37