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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #44 | 15 | 29821056 | 29822141 | 1085 | 11 | 36 | 7.71121e-28 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -11292 | ensorlt00000037347 | sorlg00000013714 | mypn-202 | 15 | 29809764 | 29838754 | + | mRNA | protein_coding |
| -11292 | ensorlt00000035168 | sorlg00000013714 | mypn-203 | 15 | 29809764 | 29838754 | + | mRNA | protein_coding |
| -11292 | ensorlt00000017205 | sorlg00000013714 | mypn-201 | 15 | 29809764 | 29838754 | + | mRNA | protein_coding |
| 17090 | ensorlt00000017211 | sorlg00000013722 | atoh7-201 | 15 | 29839231 | 29839659 | + | mRNA | protein_coding |
| -18728 | ensorlt00000017149 | sorlg00000013671 | cacul1-201 | 15 | 29802328 | 29808402 | + | mRNA | protein_coding |
| 20648 | ensorlt00000017221 | sorlg00000013731 | pkd2l1-201 | 15 | 29842789 | 29847677 | + | mRNA | protein_coding |
| 20648 | ensorlt00000017223 | sorlg00000013731 | pkd2l1-202 | 15 | 29842789 | 29847999 | + | mRNA | protein_coding |
| -28511 | ensorlt00000017134 | sorlg00000013658 | dnajc12-201 | 15 | 29787347 | 29792545 | - | mRNA | protein_coding |
| -28829 | ensorlt00000017143 | sorlg00000013667 | 15 | 29792227 | 29801391 | + | mRNA | protein_coding | |
| -33914 | ensorlt00000033992 | sorlg00000025762 | metazoa_srp-201 | 15 | 29786845 | 29787142 | - | ncRNA | misc_rna |
| -34986 | ensorlt00000017128 | sorlg00000013653 | cox5b2-201 | 15 | 29785198 | 29786070 | - | mRNA | protein_coding |
| 36383 | ensorlt00000027004 | sorlg00000013798 | tial1-201 | 15 | 29849827 | 29858524 | - | mRNA | protein_coding |
| 36383 | ensorlt00000017307 | sorlg00000013798 | tial1-202 | 15 | 29848339 | 29858524 | - | mRNA | protein_coding |
| 37696 | ensorlt00000036338 | sorlg00000027170 | bag3-201 | 15 | 29859837 | 29865589 | + | mRNA | protein_coding |
| 43469 | ensorlt00000017395 | sorlg00000013866 | inpp5f-202 | 15 | 29865610 | 29873585 | + | mRNA | protein_coding |
| 43469 | ensorlt00000017392 | sorlg00000013866 | inpp5f-201 | 15 | 29865610 | 29873585 | + | mRNA | protein_coding |
| -48053 | ensorlt00000017115 | sorlg00000013638 | herc4-202 | 15 | 29773003 | 29787214 | + | mRNA | protein_coding |
| -48053 | ensorlt00000017121 | sorlg00000013638 | herc4-201 | 15 | 29773003 | 29787214 | + | mRNA | protein_coding |
| -57841 | ensorlt00000016953 | sorlg00000013521 | 15 | 29763215 | 29768046 | + | mRNA | protein_coding | |
| -64884 | ensorlt00000044944 | sorlg00000029445 | 15 | 29756172 | 29764994 | + | mRNA | protein_coding | |
| 65067 | ensorlt00000029995 | sorlg00000029085 | mcmbp-201 | 15 | 29875471 | 29887208 | - | mRNA | protein_coding |
| 65634 | ensorlt00000017438 | sorlg00000013906 | sec23ip-202 | 15 | 29887775 | 29893715 | + | mRNA | protein_coding |
| 65634 | ensorlt00000027553 | sorlg00000013906 | sec23ip-201 | 15 | 29887775 | 29893003 | + | mRNA | protein_coding |
| -75452 | ensorlt00000029317 | sorlg00000026320 | mlh1-201 | 15 | 29738504 | 29745604 | - | mRNA | protein_coding |
| 78662 | ensorlt00000017461 | sorlg00000013924 | csgalnact2-201 | 15 | 29894615 | 29900803 | - | mRNA | protein_coding |
| 79921 | ensorlt00000017463 | sorlg00000013924 | csgalnact2-202 | 15 | 29894615 | 29902062 | - | mRNA | protein_coding |
| 92861 | ensorlt00000031097 | sorlg00000013965 | ret-202 | 15 | 29902694 | 29915002 | - | mRNA | protein_coding |
| 96006 | ensorlt00000017509 | sorlg00000013965 | ret-201 | 15 | 29902694 | 29918147 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37