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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #46 | 8 | 21261846 | 21262796 | 950 | 11 | 25 | 1.48553e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -5983 | ensorlt00000024432 | sorlg00000019647 | 8 | 21228342 | 21255863 | - | mRNA | protein_coding | |
| 8751 | ensorlt00000033250 | sorlg00000028274 | 8 | 21262451 | 21271547 | - | mRNA | protein_coding | |
| -12904 | ensorlt00000033251 | sorlg00000021901 | 8 | 21242553 | 21248942 | - | mRNA | protein_coding | |
| 28819 | ensorlt00000045984 | sorlg00000029111 | 8 | 21290979 | 21291615 | - | mRNA | protein_coding | |
| -40524 | ensorlt00000045769 | sorlg00000027952 | 8 | 21205933 | 21221322 | - | mRNA | protein_coding | |
| 47704 | ensorlt00000033292 | sorlg00000023163 | 8 | 21305685 | 21310500 | - | mRNA | protein_coding | |
| 50182 | ensorlt00000038496 | sorlg00000025742 | 8 | 21312342 | 21312978 | - | mRNA | protein_coding | |
| -61227 | ensorlt00000028784 | sorlg00000030111 | kri1-201 | 8 | 21196606 | 21200619 | - | mRNA | protein_coding |
| -62098 | ensorlt00000046048 | sorlg00000030111 | kri1-202 | 8 | 21196606 | 21199748 | - | mRNA | protein_coding |
| -64307 | ensorlt00000046023 | sorlg00000026945 | 8 | 21197443 | 21197539 | - | snoRNA | snorna | |
| -72728 | ensorlt00000043118 | sorlg00000025827 | 8 | 21186862 | 21189118 | - | mRNA | protein_coding | |
| -75704 | ensorlt00000019278 | sorlg00000015403 | kri1-201 | 8 | 21182995 | 21186142 | - | mRNA | protein_coding |
| 75752 | ensorlt00000029478 | sorlg00000023163 | 8 | 21284835 | 21338548 | - | mRNA | protein_coding | |
| -79892 | ensorlt00000030195 | sorlg00000015391 | spc24-201 | 8 | 21178813 | 21181954 | - | mRNA | protein_coding |
| -79892 | ensorlt00000019265 | sorlg00000015391 | spc24-202 | 8 | 21178813 | 21181954 | - | mRNA | protein_coding |
| 80251 | ensorlt00000027038 | sorlg00000022846 | 8 | 21319440 | 21343047 | - | mRNA | protein_coding | |
| -86912 | ensorlt00000019249 | sorlg00000015375 | s1pr5a-201 | 8 | 21174934 | 21176061 | + | mRNA | protein_coding |
| 90707 | ensorlt00000033586 | sorlg00000025256 | 8 | 21349146 | 21353503 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37