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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #1 | 15 | 13014693 | 13015794 | 1101 | 12 | 39 | 1.08188e-60 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | ensorlt00000004176 | sorlg00000003361 | 15 | 13015106 | 13033440 | + | mRNA | protein_coding | |
| -8498 | ensorlt00000045267 | sorlg00000003350 | ubr2-201 | 15 | 13006195 | 13013991 | + | mRNA | protein_coding |
| 21564 | ensorlt00000037335 | sorlg00000003367 | kcng3-202 | 15 | 13037358 | 13043655 | + | mRNA | protein_coding |
| 23467 | ensorlt00000004183 | sorlg00000003367 | kcng3-201 | 15 | 13039261 | 13045301 | + | mRNA | protein_coding |
| -25121 | ensorlt00000004168 | sorlg00000003350 | ubr2-202 | 15 | 12989572 | 13016886 | + | mRNA | protein_coding |
| 34372 | ensorlt00000004256 | sorlg00000003423 | tspan14-201 | 15 | 13050166 | 13056192 | + | mRNA | protein_coding |
| 36681 | ensorlt00000004258 | sorlg00000003423 | tspan14-202 | 15 | 13052475 | 13056192 | + | mRNA | protein_coding |
| -39845 | ensorlt00000029700 | sorlg00000025354 | si:ch73-193i2.2-201 | 15 | 12974848 | 12988806 | + | mRNA | protein_coding |
| 41766 | ensorlt00000004297 | sorlg00000003456 | eml4-203 | 15 | 13057560 | 13079758 | + | mRNA | protein_coding |
| 41766 | ensorlt00000045537 | sorlg00000003456 | eml4-202 | 15 | 13057560 | 13079758 | + | mRNA | protein_coding |
| 41766 | ensorlt00000004296 | sorlg00000003456 | eml4-201 | 15 | 13057560 | 13079758 | + | mRNA | protein_coding |
| 41766 | ensorlt00000034842 | sorlg00000003456 | eml4-204 | 15 | 13057560 | 13079758 | + | mRNA | protein_coding |
| -53337 | ensorlt00000037101 | sorlg00000029510 | prkn-201 | 15 | 12961356 | 12973073 | + | mRNA | protein_coding |
| -58153 | ensorlt00000028644 | sorlg00000026680 | 15 | 12956540 | 12960420 | + | mRNA | protein_coding | |
| -59755 | ensorlt00000027828 | sorlg00000026680 | 15 | 12954938 | 12960420 | + | mRNA | protein_coding | |
| -61142 | ensorlt00000041055 | sorlg00000026680 | 15 | 12953551 | 12960420 | + | mRNA | protein_coding | |
| 66013 | ensorlt00000004302 | sorlg00000003462 | 15 | 13081310 | 13081807 | - | mRNA | protein_coding | |
| -70627 | ensorlt00000004067 | sorlg00000003269 | ncoa4-202 | 15 | 12944066 | 12947460 | + | mRNA | protein_coding |
| -71791 | ensorlt00000035874 | sorlg00000003269 | ncoa4-203 | 15 | 12942902 | 12950436 | + | mRNA | protein_coding |
| -71791 | ensorlt00000038951 | sorlg00000003269 | ncoa4-201 | 15 | 12942902 | 12950436 | + | mRNA | protein_coding |
| -74166 | ensorlt00000030164 | sorlg00000003250 | yipf3-201 | 15 | 12936661 | 12940527 | - | mRNA | protein_coding |
| -74769 | ensorlt00000004047 | sorlg00000003250 | yipf3-202 | 15 | 12937188 | 12939924 | - | mRNA | protein_coding |
| -78039 | ensorlt00000031064 | sorlg00000029764 | 15 | 12935597 | 12936654 | - | mRNA | protein_coding | |
| -84441 | ensorlt00000039772 | sorlg00000026021 | 15 | 12930252 | 12933724 | + | mRNA | protein_coding | |
| -87679 | ensorlt00000004007 | sorlg00000003216 | dnph1-201 | 15 | 12926040 | 12927014 | - | mRNA | protein_coding |
| -98516 | ensorlt00000003996 | sorlg00000003209 | tjap1-201 | 15 | 12916177 | 12923054 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37