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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #49 | 16 | 27924435 | 27925464 | 1029 | 12 | 29 | 2.46825e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -741 | ensorlt00000037928 | sorlg00000029845 | rnf183-201 | 16 | 27923694 | 27929922 | + | mRNA | protein_coding |
| 7518 | ensorlt00000020012 | sorlg00000015989 | mgat1a-201 | 16 | 27932982 | 27936971 | + | mRNA | protein_coding |
| 10694 | ensorlt00000033057 | sorlg00000015993 | sh3bp5la-201 | 16 | 27936158 | 27941996 | + | mRNA | protein_coding |
| 11277 | ensorlt00000020018 | sorlg00000015993 | sh3bp5la-202 | 16 | 27936741 | 27940398 | + | mRNA | protein_coding |
| -13582 | ensorlt00000030804 | sorlg00000015982 | dhx16-202 | 16 | 27910853 | 27923169 | + | mRNA | protein_coding |
| -15341 | ensorlt00000020006 | sorlg00000015982 | dhx16-201 | 16 | 27909094 | 27923169 | + | mRNA | protein_coding |
| -19363 | ensorlt00000019975 | sorlg00000015959 | 16 | 27898998 | 27905072 | - | mRNA | protein_coding | |
| -19363 | ensorlt00000031499 | sorlg00000015959 | 16 | 27898998 | 27905072 | - | mRNA | protein_coding | |
| 22589 | ensorlt00000020060 | sorlg00000016024 | 16 | 27948053 | 28004636 | + | mRNA | protein_coding | |
| -25476 | ensorlt00000030881 | sorlg00000024124 | 16 | 27893261 | 27898959 | - | mRNA | protein_coding | |
| -26473 | ensorlt00000041871 | sorlg00000024124 | 16 | 27893261 | 27897962 | - | mRNA | protein_coding | |
| -27172 | ensorlt00000037695 | sorlg00000024124 | 16 | 27893261 | 27897263 | - | mRNA | protein_coding | |
| -31387 | ensorlt00000046043 | sorlg00000030371 | 16 | 27839676 | 27893048 | - | mRNA | protein_coding | |
| -31387 | ensorlt00000038902 | sorlg00000030371 | 16 | 27839676 | 27893048 | - | mRNA | protein_coding | |
| -39381 | ensorlt00000031722 | sorlg00000022507 | 16 | 27877300 | 27885054 | - | mRNA | protein_coding | |
| -41962 | ensorlt00000043601 | sorlg00000022507 | 16 | 27872858 | 27882473 | - | mRNA | protein_coding | |
| -52325 | ensorlt00000036076 | sorlg00000025297 | 16 | 27869554 | 27872110 | - | mRNA | protein_coding | |
| -52998 | ensorlt00000030249 | sorlg00000025297 | 16 | 27869554 | 27871437 | - | mRNA | protein_coding | |
| -55104 | ensorlt00000044300 | sorlg00000030371 | 16 | 27839676 | 27869331 | - | mRNA | protein_coding | |
| -59933 | ensorlt00000030765 | sorlg00000029591 | 16 | 27859711 | 27864502 | - | mRNA | protein_coding | |
| -62013 | ensorlt00000028071 | sorlg00000029591 | 16 | 27861331 | 27862422 | - | mRNA | protein_coding | |
| -77607 | ensorlt00000044512 | sorlg00000030371 | 16 | 27839676 | 27846828 | - | mRNA | protein_coding | |
| -86590 | ensorlt00000043263 | sorlg00000030239 | si:ch73-95l15.5-201 | 16 | 27830553 | 27837845 | - | mRNA | protein_coding |
| 87355 | ensorlt00000046524 | sorlg00000022264 | 16 | 28009076 | 28012819 | - | mRNA | protein_coding | |
| -95154 | ensorlt00000028300 | sorlg00000028753 | ccdc105-201 | 16 | 27817164 | 27829281 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37