CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#19 14 29614617 29615705 1088 11 36 1.75153e-36
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
8035 ensorlt00000041944 sorlg00000027216 sgcd-201 14 29623740 29750615 + mRNA protein_coding
11485 ensorlt00000029051 sorlg00000027216 sgcd-202 14 29627190 29748633 + mRNA protein_coding
27672 ensorlt00000046583 sorlg00000027160 14 29643377 29648245 + mRNA protein_coding
27672 ensorlt00000046566 sorlg00000027160 14 29643377 29649684 + mRNA protein_coding
28932 ensorlt00000043620 sorlg00000027160 14 29644637 29649684 + mRNA protein_coding
28932 ensorlt00000046001 sorlg00000027160 14 29644637 29649684 + mRNA protein_coding
60071 ensorlt00000045379 sorlg00000027216 sgcd-203 14 29675776 29748633 + mRNA protein_coding
60071 ensorlt00000036291 sorlg00000027216 sgcd-204 14 29675776 29748633 + mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37