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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #12 | 22 | 1816785 | 1817685 | 900 | 12 | 27 | 3.17336e-41 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 3476 | ensorlt00000040061 | sorlg00000009716 | tc2n-202 | 22 | 1821161 | 1830572 | + | mRNA | protein_coding |
| 3476 | ensorlt00000030930 | sorlg00000009716 | tc2n-201 | 22 | 1821161 | 1830572 | + | mRNA | protein_coding |
| 4080 | ensorlt00000012187 | sorlg00000009716 | tc2n-203 | 22 | 1821765 | 1830572 | + | mRNA | protein_coding |
| 6762 | ensorlt00000031580 | sorlg00000009716 | tc2n-204 | 22 | 1824447 | 1830572 | + | mRNA | protein_coding |
| -8327 | ensorlt00000012170 | sorlg00000009701 | fbln5-202 | 22 | 1808458 | 1821700 | + | mRNA | protein_coding |
| -9423 | ensorlt00000031737 | sorlg00000009701 | fbln5-201 | 22 | 1807362 | 1821700 | + | mRNA | protein_coding |
| 17189 | ensorlt00000012211 | sorlg00000009734 | plek2-201 | 22 | 1834874 | 1838729 | + | mRNA | protein_coding |
| -28891 | ensorlt00000033192 | sorlg00000009693 | trip11-203 | 22 | 1787894 | 1807185 | + | mRNA | protein_coding |
| -28891 | ensorlt00000039302 | sorlg00000009693 | trip11-201 | 22 | 1787894 | 1807559 | + | mRNA | protein_coding |
| -28891 | ensorlt00000012156 | sorlg00000009693 | trip11-202 | 22 | 1787894 | 1807185 | + | mRNA | protein_coding |
| 29022 | ensorlt00000040625 | sorlg00000030333 | si:ch211-10a23.2-201 | 22 | 1838786 | 1846707 | - | mRNA | protein_coding |
| 30113 | ensorlt00000012353 | sorlg00000009842 | zfyve26-202 | 22 | 1847798 | 1867855 | + | mRNA | protein_coding |
| 30113 | ensorlt00000012350 | sorlg00000009842 | zfyve26-201 | 22 | 1847798 | 1867855 | + | mRNA | protein_coding |
| 31892 | ensorlt00000032633 | sorlg00000009842 | zfyve26-203 | 22 | 1849577 | 1870529 | + | mRNA | protein_coding |
| -34734 | ensorlt00000012149 | sorlg00000009684 | golga5-201 | 22 | 1782051 | 1787598 | + | mRNA | protein_coding |
| -41697 | ensorlt00000012123 | sorlg00000009661 | rtf1-203 | 22 | 1775088 | 1780277 | + | mRNA | protein_coding |
| -47137 | ensorlt00000012030 | sorlg00000027861 | ndufaf1-201 | 22 | 1767818 | 1769648 | - | mRNA | protein_coding |
| -55722 | ensorlt00000012120 | sorlg00000009661 | rtf1-201 | 22 | 1761063 | 1781813 | + | mRNA | protein_coding |
| -55722 | ensorlt00000012116 | sorlg00000009661 | rtf1-202 | 22 | 1761063 | 1781813 | + | mRNA | protein_coding |
| -56965 | ensorlt00000012033 | sorlg00000024455 | ndufaf1-201 | 22 | 1757990 | 1759820 | - | mRNA | protein_coding |
| 59047 | ensorlt00000012384 | sorlg00000009869 | rdh12-201 | 22 | 1870302 | 1876732 | - | mRNA | protein_coding |
| 59152 | ensorlt00000042124 | sorlg00000029032 | vti1b-201 | 22 | 1876837 | 1882910 | + | mRNA | protein_coding |
| 59710 | ensorlt00000012416 | sorlg00000029032 | vti1b-202 | 22 | 1877395 | 1881006 | + | mRNA | protein_coding |
| -62972 | ensorlt00000012015 | sorlg00000009583 | oip5-201 | 22 | 1750426 | 1753813 | - | mRNA | protein_coding |
| -63467 | ensorlt00000026770 | sorlg00000029808 | nusap1-205 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| -63467 | ensorlt00000044577 | sorlg00000029808 | nusap1-207 | 22 | 1753318 | 1761002 | + | mRNA | protein_coding |
| -63467 | ensorlt00000041261 | sorlg00000029808 | nusap1-204 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| -63467 | ensorlt00000040692 | sorlg00000029808 | nusap1-201 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| -63467 | ensorlt00000035455 | sorlg00000029808 | nusap1-202 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| -63467 | ensorlt00000041023 | sorlg00000029808 | nusap1-203 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| -63467 | ensorlt00000037984 | sorlg00000029808 | nusap1-206 | 22 | 1753318 | 1770787 | + | mRNA | protein_coding |
| 70439 | ensorlt00000012465 | sorlg00000009933 | arg2-201 | 22 | 1882456 | 1888124 | - | mRNA | protein_coding |
| 75123 | ensorlt00000037745 | sorlg00000024690 | 22 | 1892808 | 1894478 | + | mRNA | protein_coding | |
| -75537 | ensorlt00000012000 | sorlg00000009568 | chp1-203 | 22 | 1741248 | 1746700 | + | mRNA | protein_coding |
| -76172 | ensorlt00000011998 | sorlg00000009568 | chp1-201 | 22 | 1740613 | 1746700 | + | mRNA | protein_coding |
| -76172 | ensorlt00000043758 | sorlg00000009568 | chp1-202 | 22 | 1740613 | 1745064 | + | mRNA | protein_coding |
| 76231 | ensorlt00000012495 | sorlg00000009958 | rbm25a-201 | 22 | 1893916 | 1900448 | + | mRNA | protein_coding |
| -82599 | ensorlt00000011956 | sorlg00000009533 | lgmn-201 | 22 | 1734186 | 1740891 | + | mRNA | protein_coding |
| 84938 | ensorlt00000012502 | sorlg00000009965 | plekhd1-201 | 22 | 1902623 | 1908253 | + | mRNA | protein_coding |
| 90459 | ensorlt00000030404 | sorlg00000009965 | plekhd1-202 | 22 | 1908144 | 1923959 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37