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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #17 | 3 | 309650 | 310584 | 934 | 12 | 32 | 1.23304e-39 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 3012 | ensorlt00000032145 | sorlg00000023118 | 3 | 313596 | 317617 | + | mRNA | protein_coding | |
| -4683 | ensorlt00000041594 | sorlg00000023471 | 3 | 304967 | 309552 | + | mRNA | protein_coding | |
| -14278 | ensorlt00000043113 | sorlg00000022688 | vps33b-203 | 3 | 278710 | 295372 | - | mRNA | protein_coding |
| -14278 | ensorlt00000041425 | sorlg00000022688 | vps33b-201 | 3 | 278581 | 295372 | - | mRNA | protein_coding |
| -14278 | ensorlt00000045274 | sorlg00000022688 | vps33b-202 | 3 | 278581 | 295372 | - | mRNA | protein_coding |
| -14947 | ensorlt00000032606 | sorlg00000026752 | hddc3-202 | 3 | 294703 | 299542 | + | mRNA | protein_coding |
| 16557 | ensorlt00000026778 | sorlg00000019968 | hypk-202 | 3 | 327141 | 328427 | + | mRNA | protein_coding |
| 16557 | ensorlt00000024793 | sorlg00000019968 | hypk-201 | 3 | 327141 | 332666 | + | mRNA | protein_coding |
| -26817 | ensorlt00000034398 | sorlg00000026752 | hddc3-201 | 3 | 282833 | 299542 | + | mRNA | protein_coding |
| 29252 | ensorlt00000024798 | sorlg00000019973 | mfap1-203 | 3 | 332840 | 339836 | - | mRNA | protein_coding |
| -30961 | ensorlt00000026866 | sorlg00000028005 | 3 | 257879 | 278689 | - | mRNA | protein_coding | |
| -30961 | ensorlt00000029068 | sorlg00000028005 | 3 | 257902 | 278689 | - | mRNA | protein_coding | |
| -56446 | ensorlt00000031777 | sorlg00000027410 | 3 | 238909 | 253204 | - | mRNA | protein_coding | |
| -56446 | ensorlt00000044613 | sorlg00000027410 | 3 | 238909 | 253204 | - | mRNA | protein_coding | |
| 69963 | ensorlt00000034502 | sorlg00000019973 | mfap1-202 | 3 | 332840 | 380547 | - | mRNA | protein_coding |
| -81872 | ensorlt00000031150 | sorlg00000026511 | 3 | 227778 | 231921 | + | mRNA | protein_coding | |
| -94384 | ensorlt00000022944 | sorlg00000018322 | ndufs3-201 | 3 | 203393 | 215266 | - | mRNA | protein_coding |
| 98129 | ensorlt00000043524 | sorlg00000019973 | mfap1-201 | 3 | 332840 | 408713 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37