CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#16 20 15042642 15043458 816 12 28 8.85829e-40
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
13518 ensorlt00000009283 sorlg00000007404 myrip-201 20 14947205 15056976 - mRNA protein_coding
18351 ensorlt00000029757 sorlg00000025058 20 15060195 15061809 - mRNA protein_coding
44462 ensorlt00000009296 sorlg00000007417 ndufb4-201 20 15087920 15091136 + mRNA protein_coding
46414 ensorlt00000009291 sorlg00000007411 20 15086019 15089872 - mRNA protein_coding
55117 ensorlt00000038313 sorlg00000007442 hgd-202 20 15086554 15098575 - mRNA protein_coding
56220 ensorlt00000041276 sorlg00000007442 hgd-201 20 15086554 15099678 - mRNA protein_coding
57656 ensorlt00000009331 sorlg00000007442 hgd-203 20 15092129 15101114 - mRNA protein_coding
67864 ensorlt00000035833 sorlg00000007450 arx-201 20 15111322 15119735 + mRNA protein_coding
67864 ensorlt00000034204 sorlg00000007450 arx-202 20 15111322 15119735 + mRNA protein_coding
67864 ensorlt00000009338 sorlg00000007450 arx-203 20 15111322 15163442 + mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37