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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #47 | 10 | 1395471 | 1396245 | 774 | 12 | 20 | 1.51719e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -24754 | ensorlt00000030488 | sorlg00000026262 | 10 | 1370717 | 1371853 | + | mRNA | protein_coding | |
| 54543 | ensorlt00000025138 | sorlg00000020270 | gask1b-201 | 10 | 1450788 | 1461500 | + | mRNA | protein_coding |
| -69835 | ensorlt00000042201 | sorlg00000020233 | rxfp1-203 | 10 | 1182501 | 1325636 | - | mRNA | protein_coding |
| -69901 | ensorlt00000025094 | sorlg00000020233 | rxfp1-204 | 10 | 1182702 | 1325570 | - | mRNA | protein_coding |
| -75696 | ensorlt00000036112 | sorlg00000020235 | 10 | 1314901 | 1319775 | - | mRNA | protein_coding | |
| -75824 | ensorlt00000045286 | sorlg00000020235 | 10 | 1314901 | 1319647 | - | mRNA | protein_coding | |
| -75904 | ensorlt00000044074 | sorlg00000020235 | 10 | 1314901 | 1319567 | - | mRNA | protein_coding | |
| -76926 | ensorlt00000039896 | sorlg00000020235 | 10 | 1314901 | 1318545 | - | mRNA | protein_coding | |
| -77161 | ensorlt00000027450 | sorlg00000020235 | 10 | 1314901 | 1318310 | - | mRNA | protein_coding | |
| -77587 | ensorlt00000038461 | sorlg00000020235 | 10 | 1314901 | 1317884 | - | mRNA | protein_coding | |
| -77849 | ensorlt00000046876 | sorlg00000020235 | 10 | 1314901 | 1317622 | - | mRNA | protein_coding | |
| -78203 | ensorlt00000027419 | sorlg00000020235 | 10 | 1314901 | 1317268 | - | mRNA | protein_coding | |
| -78781 | ensorlt00000025096 | sorlg00000020235 | 10 | 1314901 | 1316690 | - | mRNA | protein_coding | |
| -79006 | ensorlt00000041303 | sorlg00000020235 | 10 | 1314901 | 1316465 | - | mRNA | protein_coding | |
| 79038 | ensorlt00000025127 | sorlg00000020262 | tmem144b-201 | 10 | 1444958 | 1475283 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37