CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#43 23 3850204 3850968 764 12 25 5.41353e-28
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
8784 ensorlt00000011959 sorlg00000009536 arntl2-201 23 3833810 3859752 - mRNA protein_coding
8784 ensorlt00000032665 sorlg00000009536 arntl2-202 23 3833810 3859752 - mRNA protein_coding
46922 ensorlt00000012001 sorlg00000009571 stk38l-201 23 3873153 3897890 - mRNA protein_coding
46922 ensorlt00000012007 sorlg00000009571 stk38l-202 23 3875745 3897890 - mRNA protein_coding
-48877 ensorlt00000035758 sorlg00000029239 zgc:162331-201 23 3801327 3824145 + mRNA protein_coding
60500 ensorlt00000012038 sorlg00000009602 fgfr1op2-201 23 3911468 3921194 + mRNA protein_coding
-61094 ensorlt00000027106 sorlg00000025248 slc13a4-201 23 3730292 3789110 - mRNA protein_coding
61608 ensorlt00000012011 sorlg00000009581 med21-201 23 3904371 3912576 - mRNA protein_coding
72048 ensorlt00000012054 sorlg00000009613 tm7sf3-201 23 3923016 3937541 + mRNA protein_coding
-74846 ensorlt00000034685 sorlg00000025248 slc13a4-202 23 3730433 3775358 - mRNA protein_coding
99061 ensorlt00000038268 sorlg00000009624 gas2l3-201 23 3935202 3950029 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37