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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #2 | 16 | 26220047 | 26221325 | 1278 | 12 | 41 | 7.39153e-58 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -24958 | ensorlt00000019438 | sorlg00000015519 | sh3bp5b-201 | 16 | 26195089 | 26217510 | + | mRNA | protein_coding |
| -24958 | ensorlt00000028824 | sorlg00000015519 | sh3bp5b-202 | 16 | 26195089 | 26218930 | + | mRNA | protein_coding |
| 25471 | ensorlt00000019456 | sorlg00000015536 | capn7-201 | 16 | 26236530 | 26246796 | - | mRNA | protein_coding |
| 25789 | ensorlt00000033538 | sorlg00000015536 | capn7-202 | 16 | 26233651 | 26247114 | - | mRNA | protein_coding |
| 30283 | ensorlt00000019457 | sorlg00000015539 | 16 | 26247399 | 26251608 | - | mRNA | protein_coding | |
| 30860 | ensorlt00000034371 | sorlg00000025991 | 16 | 26252185 | 26260269 | + | mRNA | protein_coding | |
| -43714 | ensorlt00000045098 | sorlg00000026772 | eaf1-201 | 16 | 26168400 | 26176333 | - | mRNA | protein_coding |
| -45740 | ensorlt00000019426 | sorlg00000015510 | mettl6-201 | 16 | 26174307 | 26178758 | + | mRNA | protein_coding |
| -85426 | ensorlt00000019395 | sorlg00000015488 | bmper-202 | 16 | 26134621 | 26167317 | + | mRNA | protein_coding |
| -88147 | ensorlt00000019393 | sorlg00000015488 | bmper-201 | 16 | 26131900 | 26167317 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37