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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #9 | 8 | 450569 | 451548 | 979 | 12 | 31 | 4.07987e-43 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | ensorlt00000033385 | sorlg00000030318 | 8 | 450353 | 451492 | - | mRNA | protein_coding | |
| -4733 | ensorlt00000029738 | sorlg00000024494 | 8 | 445836 | 467574 | + | mRNA | protein_coding | |
| -4928 | ensorlt00000045352 | sorlg00000024494 | 8 | 445641 | 465188 | + | mRNA | protein_coding | |
| -17401 | ensorlt00000034536 | sorlg00000019717 | 8 | 429256 | 433168 | - | mRNA | protein_coding | |
| -17755 | ensorlt00000024506 | sorlg00000019717 | 8 | 429256 | 432814 | - | mRNA | protein_coding | |
| -18149 | ensorlt00000040605 | sorlg00000019717 | 8 | 429077 | 432420 | - | mRNA | protein_coding | |
| -20052 | ensorlt00000041326 | sorlg00000026960 | 8 | 430517 | 434408 | + | mRNA | protein_coding | |
| 20145 | ensorlt00000023100 | sorlg00000018463 | 8 | 467358 | 471693 | - | mRNA | protein_coding | |
| -26338 | ensorlt00000024620 | sorlg00000019817 | 8 | 421326 | 424231 | - | mRNA | protein_coding | |
| 35466 | ensorlt00000044655 | sorlg00000030594 | rapgefl1-202 | 8 | 476240 | 487014 | - | mRNA | protein_coding |
| -46989 | ensorlt00000039310 | sorlg00000023247 | 8 | 402245 | 403580 | - | mRNA | protein_coding | |
| 49252 | ensorlt00000033866 | sorlg00000030594 | rapgefl1-201 | 8 | 476240 | 500800 | - | mRNA | protein_coding |
| -53129 | ensorlt00000025215 | sorlg00000020338 | 8 | 395496 | 397440 | - | mRNA | protein_coding | |
| 56818 | ensorlt00000044979 | sorlg00000023125 | casc3-201 | 8 | 498727 | 508366 | - | mRNA | protein_coding |
| -59481 | ensorlt00000027206 | sorlg00000028684 | si:dkeyp-113d7.1-201 | 8 | 391088 | 397155 | + | mRNA | protein_coding |
| -61708 | ensorlt00000044782 | sorlg00000030478 | 8 | 388861 | 390213 | + | mRNA | protein_coding | |
| 64978 | ensorlt00000032679 | sorlg00000022520 | 8 | 516526 | 517224 | + | mRNA | protein_coding | |
| 68216 | ensorlt00000033771 | sorlg00000029855 | 8 | 510185 | 519764 | - | mRNA | protein_coding | |
| 71975 | ensorlt00000038554 | sorlg00000029016 | mettl23-201 | 8 | 523523 | 529892 | + | mRNA | protein_coding |
| 74236 | ensorlt00000023115 | sorlg00000018477 | jmjd6-201 | 8 | 522728 | 525784 | - | mRNA | protein_coding |
| 74673 | ensorlt00000044827 | sorlg00000029016 | mettl23-202 | 8 | 526221 | 529892 | + | mRNA | protein_coding |
| 74673 | ensorlt00000043485 | sorlg00000029016 | mettl23-203 | 8 | 526221 | 529484 | + | mRNA | protein_coding |
| -77441 | ensorlt00000028454 | sorlg00000030302 | 8 | 373128 | 379718 | + | mRNA | protein_coding | |
| 78864 | ensorlt00000035639 | sorlg00000026086 | 8 | 528250 | 530412 | - | mRNA | protein_coding | |
| 82159 | ensorlt00000032857 | sorlg00000023488 | caskin2-201 | 8 | 533707 | 562513 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37