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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #38 | 18 | 19963184 | 19964018 | 834 | 12 | 25 | 3.35138e-31 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 35228 | ensorlt00000033449 | sorlg00000026347 | si:ch211-200p22.4-203 | 18 | 19999246 | 20147782 | + | mRNA | protein_coding |
| 35228 | ensorlt00000030927 | sorlg00000026347 | si:ch211-200p22.4-204 | 18 | 19999246 | 20147782 | + | mRNA | protein_coding |
| 35228 | ensorlt00000043377 | sorlg00000026347 | si:ch211-200p22.4-201 | 18 | 19999246 | 20148051 | + | mRNA | protein_coding |
| 35228 | ensorlt00000031475 | sorlg00000026347 | si:ch211-200p22.4-202 | 18 | 19999246 | 20148051 | + | mRNA | protein_coding |
| 36363 | ensorlt00000037062 | sorlg00000026347 | si:ch211-200p22.4-205 | 18 | 20000381 | 20148199 | + | mRNA | protein_coding |
| 36418 | ensorlt00000029637 | sorlg00000026347 | si:ch211-200p22.4-207 | 18 | 20000436 | 20147782 | + | mRNA | protein_coding |
| 36418 | ensorlt00000041205 | sorlg00000026347 | si:ch211-200p22.4-208 | 18 | 20000436 | 20147782 | + | mRNA | protein_coding |
| 36418 | ensorlt00000044735 | sorlg00000026347 | si:ch211-200p22.4-206 | 18 | 20000436 | 20148051 | + | mRNA | protein_coding |
| -60959 | ensorlt00000044959 | sorlg00000024840 | zgc:162171-201 | 18 | 19902225 | 19967554 | + | mRNA | protein_coding |
| -90874 | ensorlt00000010480 | sorlg00000008345 | 18 | 19844477 | 19872310 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37