CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#27 5 30060867 30062266 1399 12 45 1.63527e-34
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
-778 ensorlt00000034046 sorlg00000024114 5 30056742 30060089 - mRNA protein_coding
26639 ensorlt00000041674 sorlg00000022054 5 30088905 30092924 + mRNA protein_coding
33172 ensorlt00000035208 sorlg00000016608 dlgap4b-201 5 30095438 30137126 + mRNA protein_coding
33172 ensorlt00000020790 sorlg00000016608 dlgap4b-202 5 30095438 30137126 + mRNA protein_coding
75056 ensorlt00000042192 sorlg00000022604 5 30137322 30142374 + mRNA protein_coding
87724 ensorlt00000020801 sorlg00000016619 myl9a-202 5 30144761 30149990 - mRNA protein_coding
88817 ensorlt00000039756 sorlg00000016619 myl9a-201 5 30144761 30151083 - mRNA protein_coding
89452 ensorlt00000020834 sorlg00000016643 zgc:123305-201 5 30151718 30168877 + mRNA protein_coding
92246 ensorlt00000040822 sorlg00000016643 zgc:123305-202 5 30154512 30168877 + mRNA protein_coding
92246 ensorlt00000044544 sorlg00000016643 zgc:123305-203 5 30154512 30168877 + mRNA protein_coding
92246 ensorlt00000033264 sorlg00000016643 zgc:123305-204 5 30154512 30168877 + mRNA protein_coding
-94335 ensorlt00000028805 sorlg00000024972 5 29966532 29969294 + mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37