PycoMeth
Documentation
GitHub
CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #4 | 11 | 27686928 | 27688355 | 1427 | 12 | 45 | 5.37047e-55 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -21358 | ensorlt00000017935 | sorlg00000014304 | 11 | 27665570 | 27671942 | + | mRNA | protein_coding | |
| 61015 | ensorlt00000017944 | sorlg00000014310 | med10-201 | 11 | 27747147 | 27749370 | - | mRNA | protein_coding |
| 65156 | ensorlt00000034340 | sorlg00000025027 | 11 | 27750518 | 27753511 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37