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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #22 | 9 | 1939074 | 1940052 | 978 | 12 | 28 | 1.09577e-35 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 725 | ensorlt00000000515 | sorlg00000000417 | 9 | 1935527 | 1940777 | - | mRNA | protein_coding | |
| 6304 | ensorlt00000045125 | sorlg00000024554 | 9 | 1943765 | 1946356 | - | mRNA | protein_coding | |
| 8427 | ensorlt00000035817 | sorlg00000024525 | 9 | 1948479 | 1951063 | + | mRNA | protein_coding | |
| -15146 | ensorlt00000000492 | sorlg00000000401 | siat8c2-201 | 9 | 1923928 | 1930131 | + | mRNA | protein_coding |
| 18800 | ensorlt00000000568 | sorlg00000000460 | zgc:172315-201 | 9 | 1951151 | 1958852 | - | mRNA | protein_coding |
| -20012 | ensorlt00000000472 | sorlg00000000384 | 9 | 1919062 | 1922638 | + | mRNA | protein_coding | |
| 24786 | ensorlt00000000572 | sorlg00000000466 | tal2-201 | 9 | 1964500 | 1964838 | - | mRNA | protein_coding |
| 44482 | ensorlt00000031314 | sorlg00000030010 | 9 | 1967230 | 1984534 | - | mRNA | protein_coding | |
| -50784 | ensorlt00000000458 | sorlg00000000372 | zenzai-202 | 9 | 1878531 | 1888290 | - | mRNA | protein_coding |
| -51051 | ensorlt00000035514 | sorlg00000000372 | zenzai-201 | 9 | 1875739 | 1888023 | - | mRNA | protein_coding |
| 55117 | ensorlt00000000597 | sorlg00000000488 | krt1-c5-202 | 9 | 1988611 | 1995169 | - | mRNA | protein_coding |
| 55649 | ensorlt00000000595 | sorlg00000000488 | krt1-c5-201 | 9 | 1988298 | 1995701 | - | mRNA | protein_coding |
| 71396 | ensorlt00000000611 | sorlg00000000498 | si:ch211-236k19.2-201 | 9 | 2004120 | 2011448 | - | mRNA | protein_coding |
| -85099 | ensorlt00000039311 | sorlg00000000353 | 9 | 1853975 | 1866218 | + | mRNA | protein_coding | |
| 86445 | ensorlt00000000625 | sorlg00000000509 | ptgs1-201 | 9 | 2026497 | 2038137 | + | mRNA | protein_coding |
| -87386 | ensorlt00000036394 | sorlg00000000353 | 9 | 1851688 | 1866218 | + | mRNA | protein_coding | |
| -87386 | ensorlt00000000429 | sorlg00000000353 | 9 | 1851688 | 1866218 | + | mRNA | protein_coding | |
| -90146 | ensorlt00000000419 | sorlg00000000346 | 9 | 1847206 | 1848928 | - | mRNA | protein_coding | |
| -94825 | ensorlt00000032405 | sorlg00000027430 | 9 | 1840506 | 1844249 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37