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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #15 | 14 | 24222331 | 24223586 | 1255 | 12 | 41 | 3.33325e-40 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 2381 | ensorlt00000017345 | sorlg00000013833 | pgap2-201 | 14 | 24220856 | 24225967 | - | mRNA | protein_coding |
| -19711 | ensorlt00000017317 | sorlg00000013812 | rhogb-201 | 14 | 24202620 | 24215903 | + | mRNA | protein_coding |
| -26110 | ensorlt00000036885 | sorlg00000024642 | stim1b-201 | 14 | 24174573 | 24196221 | - | mRNA | protein_coding |
| -26110 | ensorlt00000033640 | sorlg00000024642 | stim1b-202 | 14 | 24174573 | 24196221 | - | mRNA | protein_coding |
| -29300 | ensorlt00000036516 | sorlg00000024642 | stim1b-203 | 14 | 24179480 | 24193031 | - | mRNA | protein_coding |
| -57607 | ensorlt00000042957 | sorlg00000029318 | 14 | 24164724 | 24167600 | + | mRNA | protein_coding | |
| -63372 | ensorlt00000034278 | sorlg00000024067 | 14 | 24157476 | 24158959 | - | mRNA | protein_coding | |
| -63372 | ensorlt00000037346 | sorlg00000024067 | 14 | 24157464 | 24158959 | - | mRNA | protein_coding | |
| -68881 | ensorlt00000017306 | sorlg00000013800 | guca1d-201 | 14 | 24146858 | 24153450 | - | mRNA | protein_coding |
| -82209 | ensorlt00000040828 | sorlg00000013770 | alg8-202 | 14 | 24140122 | 24147172 | + | mRNA | protein_coding |
| -82230 | ensorlt00000030840 | sorlg00000013736 | ccdc90b-202 | 14 | 24132034 | 24140101 | - | mRNA | protein_coding |
| -82341 | ensorlt00000017269 | sorlg00000013770 | alg8-201 | 14 | 24139990 | 24147172 | + | mRNA | protein_coding |
| -82362 | ensorlt00000017229 | sorlg00000013736 | ccdc90b-201 | 14 | 24133401 | 24139969 | - | mRNA | protein_coding |
| 84021 | ensorlt00000028999 | sorlg00000028730 | 14 | 24306375 | 24307607 | - | mRNA | protein_coding | |
| 95824 | ensorlt00000034040 | sorlg00000025574 | 14 | 24318277 | 24319410 | - | mRNA | protein_coding | |
| -99941 | ensorlt00000017215 | sorlg00000013725 | pcf11-202 | 14 | 24122390 | 24132798 | + | mRNA | protein_coding |
| -99941 | ensorlt00000046954 | sorlg00000013725 | pcf11-201 | 14 | 24122390 | 24132798 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37