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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #18 | 19 | 1948176 | 1949405 | 1229 | 12 | 42 | 2.96697e-38 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -2370 | ensorlt00000036726 | sorlg00000025662 | 19 | 1945806 | 1949860 | + | mRNA | protein_coding | |
| 26666 | ensorlt00000003025 | sorlg00000002436 | xrcc6-202 | 19 | 1976071 | 1981417 | + | mRNA | protein_coding |
| 26666 | ensorlt00000003027 | sorlg00000002436 | xrcc6-201 | 19 | 1976071 | 1981819 | + | mRNA | protein_coding |
| 35921 | ensorlt00000033135 | sorlg00000029725 | josd1-201 | 19 | 1985326 | 1990340 | + | mRNA | protein_coding |
| -36890 | ensorlt00000038704 | sorlg00000002421 | mrtfab-204 | 19 | 1911286 | 1935809 | + | mRNA | protein_coding |
| 42900 | ensorlt00000032345 | sorlg00000026332 | cbx7b-203 | 19 | 1992305 | 1997352 | + | mRNA | protein_coding |
| 42900 | ensorlt00000042130 | sorlg00000026332 | cbx7b-201 | 19 | 1992305 | 1998396 | + | mRNA | protein_coding |
| 42900 | ensorlt00000028264 | sorlg00000026332 | cbx7b-202 | 19 | 1992305 | 1998396 | + | mRNA | protein_coding |
| -46522 | ensorlt00000003008 | sorlg00000002421 | mrtfab-203 | 19 | 1901654 | 1931985 | + | mRNA | protein_coding |
| -55366 | ensorlt00000003009 | sorlg00000002421 | mrtfab-202 | 19 | 1892810 | 1932838 | + | mRNA | protein_coding |
| -55366 | ensorlt00000040426 | sorlg00000002421 | mrtfab-201 | 19 | 1892810 | 1935809 | + | mRNA | protein_coding |
| -59867 | ensorlt00000002984 | sorlg00000002399 | vstm4b-201 | 19 | 1874725 | 1888309 | - | mRNA | protein_coding |
| -78377 | ensorlt00000002977 | sorlg00000002394 | lrrc18b-201 | 19 | 1864403 | 1869799 | - | mRNA | protein_coding |
| -85119 | ensorlt00000002969 | sorlg00000002387 | si:dkey-191m6.4-201 | 19 | 1840851 | 1863057 | - | mRNA | protein_coding |
| 87791 | ensorlt00000003104 | sorlg00000002496 | ep300a-201 | 19 | 2010342 | 2037196 | - | mRNA | protein_coding |
| -88902 | ensorlt00000032449 | sorlg00000002387 | si:dkey-191m6.4-202 | 19 | 1840851 | 1859274 | - | mRNA | protein_coding |
| -93820 | ensorlt00000034221 | sorlg00000002387 | si:dkey-191m6.4-203 | 19 | 1840851 | 1854356 | - | mRNA | protein_coding |
| 96736 | ensorlt00000040579 | sorlg00000002510 | l3mbtl2-201 | 19 | 2046141 | 2057879 | + | mRNA | protein_coding |
| 96736 | ensorlt00000003119 | sorlg00000002510 | l3mbtl2-202 | 19 | 2046141 | 2057879 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37