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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #40 | 1 | 28861433 | 28862812 | 1379 | 12 | 41 | 5.83994e-30 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 3270 | ensorlt00000015172 | sorlg00000012122 | gnav1-201 | 1 | 28837663 | 28866082 | - | mRNA | protein_coding |
| 10962 | ensorlt00000015203 | sorlg00000012151 | pcyt2-202 | 1 | 28868106 | 28873774 | - | mRNA | protein_coding |
| 10962 | ensorlt00000009918 | sorlg00000012151 | pcyt2-201 | 1 | 28868106 | 28873774 | - | mRNA | protein_coding |
| 16963 | ensorlt00000015219 | sorlg00000012165 | sirt7-201 | 1 | 28876317 | 28879775 | - | mRNA | protein_coding |
| -28171 | ensorlt00000030591 | sorlg00000028541 | 1 | 28833262 | 28837005 | + | mRNA | protein_coding | |
| 30048 | ensorlt00000035128 | sorlg00000027084 | 1 | 28879796 | 28892860 | - | mRNA | protein_coding | |
| -30816 | ensorlt00000015141 | sorlg00000012098 | npb-201 | 1 | 28830617 | 28831202 | + | mRNA | protein_coding |
| -36016 | ensorlt00000015132 | sorlg00000012088 | sgsh-201 | 1 | 28825417 | 28830167 | + | mRNA | protein_coding |
| -36421 | ensorlt00000046125 | sorlg00000026002 | 1 | 28818237 | 28825012 | - | mRNA | protein_coding | |
| -38044 | ensorlt00000036620 | sorlg00000028837 | 1 | 28823389 | 28825844 | + | mRNA | protein_coding | |
| 38094 | ensorlt00000015228 | sorlg00000012170 | mafg-201 | 1 | 28900118 | 28900906 | - | mRNA | protein_coding |
| -39576 | ensorlt00000030211 | sorlg00000012068 | slc26a11-201 | 1 | 28812949 | 28821857 | - | mRNA | protein_coding |
| -41736 | ensorlt00000015110 | sorlg00000012068 | slc26a11-202 | 1 | 28812949 | 28819697 | - | mRNA | protein_coding |
| -50999 | ensorlt00000015073 | sorlg00000012039 | 1 | 28809939 | 28810434 | - | mRNA | protein_coding | |
| -53485 | ensorlt00000015064 | sorlg00000012029 | 1 | 28797353 | 28807948 | - | mRNA | protein_coding | |
| -57807 | ensorlt00000030345 | sorlg00000022735 | 1 | 28803626 | 28804432 | + | mRNA | protein_coding | |
| 74221 | ensorlt00000038723 | sorlg00000027940 | 1 | 28927014 | 28937033 | - | mRNA | protein_coding | |
| 84379 | ensorlt00000031592 | sorlg00000012206 | myadml2-202 | 1 | 28943708 | 28947191 | - | mRNA | protein_coding |
| 84379 | ensorlt00000015280 | sorlg00000012206 | myadml2-201 | 1 | 28943708 | 28947191 | - | mRNA | protein_coding |
| -89844 | ensorlt00000015046 | sorlg00000012018 | nanos3-201 | 1 | 28770845 | 28771589 | - | mRNA | protein_coding |
| 99890 | ensorlt00000015311 | sorlg00000012233 | aspscr1-201 | 1 | 28952060 | 28962702 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37