PycoMeth
Documentation
GitHub
CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #42 | 3 | 16474087 | 16474976 | 889 | 11 | 26 | 3.61847e-28 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -3223 | ensorlt00000005943 | sorlg00000004724 | grk1-201 | 3 | 16470864 | 16479209 | + | mRNA | protein_coding |
| 5613 | ensorlt00000005964 | sorlg00000004739 | 3 | 16480589 | 16494851 | + | mRNA | protein_coding | |
| -12344 | ensorlt00000005931 | sorlg00000004713 | tmco3-201 | 3 | 16461743 | 16468008 | + | mRNA | protein_coding |
| -15707 | ensorlt00000005914 | sorlg00000004697 | dcun1d2b-201 | 3 | 16457075 | 16458380 | - | mRNA | protein_coding |
| -19580 | ensorlt00000005910 | sorlg00000004693 | adprhl1-201 | 3 | 16446196 | 16454507 | - | mRNA | protein_coding |
| -28166 | ensorlt00000005882 | sorlg00000004671 | grtp1-201 | 3 | 16439229 | 16445921 | - | mRNA | protein_coding |
| 29106 | ensorlt00000027718 | sorlg00000004757 | gas6-202 | 3 | 16481317 | 16504082 | - | mRNA | protein_coding |
| 29106 | ensorlt00000005988 | sorlg00000004757 | gas6-201 | 3 | 16476723 | 16504082 | - | mRNA | protein_coding |
| 39643 | ensorlt00000006078 | sorlg00000004826 | pros1-201 | 3 | 16505885 | 16514619 | - | mRNA | protein_coding |
| -42368 | ensorlt00000005855 | sorlg00000004652 | lamp1a-201 | 3 | 16431719 | 16438998 | + | mRNA | protein_coding |
| -48961 | ensorlt00000005816 | sorlg00000004625 | cul4a-201 | 3 | 16425126 | 16429916 | + | mRNA | protein_coding |
| -52098 | ensorlt00000005776 | sorlg00000004590 | tgfbrap1-202 | 3 | 16410712 | 16421989 | - | mRNA | protein_coding |
| -52098 | ensorlt00000027809 | sorlg00000004590 | tgfbrap1-201 | 3 | 16410712 | 16421989 | - | mRNA | protein_coding |
| -53982 | ensorlt00000005774 | sorlg00000004590 | tgfbrap1-203 | 3 | 16412068 | 16420105 | - | mRNA | protein_coding |
| -66476 | ensorlt00000035281 | sorlg00000004577 | 3 | 16392170 | 16407611 | - | mRNA | protein_coding | |
| -66476 | ensorlt00000005757 | sorlg00000004577 | 3 | 16392170 | 16407611 | - | mRNA | protein_coding | |
| -82388 | ensorlt00000005744 | sorlg00000004567 | lims1-201 | 3 | 16381561 | 16391699 | - | mRNA | protein_coding |
| -84350 | ensorlt00000005743 | sorlg00000004567 | lims1-202 | 3 | 16381561 | 16389737 | - | mRNA | protein_coding |
| 90475 | ensorlt00000006142 | sorlg00000004873 | rasa3-201 | 3 | 16519928 | 16565451 | - | mRNA | protein_coding |
| 97022 | ensorlt00000006230 | sorlg00000004938 | tpp2-201 | 3 | 16571998 | 16592453 | + | mRNA | protein_coding |
| 97022 | ensorlt00000044630 | sorlg00000004938 | tpp2-202 | 3 | 16571998 | 16592453 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37