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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #20 | 22 | 2405753 | 2407192 | 1439 | 12 | 40 | 2.10806e-36 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | ensorlt00000027844 | sorlg00000028018 | tbpl2-202 | 22 | 2405923 | 2412801 | + | mRNA | protein_coding |
| -944 | ensorlt00000013498 | sorlg00000028018 | tbpl2-201 | 22 | 2404809 | 2407890 | + | mRNA | protein_coding |
| -3847 | ensorlt00000038385 | sorlg00000010114 | zgc:113944-202 | 22 | 2395395 | 2401906 | - | mRNA | protein_coding |
| -3847 | ensorlt00000034335 | sorlg00000010114 | zgc:113944-201 | 22 | 2394565 | 2401906 | - | mRNA | protein_coding |
| -4146 | ensorlt00000012683 | sorlg00000010114 | zgc:113944-203 | 22 | 2398540 | 2401607 | - | mRNA | protein_coding |
| 5609 | ensorlt00000012706 | sorlg00000010130 | jmjd7-201 | 22 | 2404349 | 2412801 | - | mRNA | protein_coding |
| 10304 | ensorlt00000041852 | sorlg00000023986 | fbxo34-201 | 22 | 2415628 | 2417496 | - | mRNA | protein_coding |
| -18091 | ensorlt00000040554 | sorlg00000025253 | 22 | 2385750 | 2387662 | - | mRNA | protein_coding | |
| 18816 | ensorlt00000033430 | sorlg00000028430 | lgals3b-201 | 22 | 2423575 | 2426008 | - | mRNA | protein_coding |
| 33054 | ensorlt00000012736 | sorlg00000010158 | 22 | 2434907 | 2440246 | - | mRNA | protein_coding | |
| -47345 | ensorlt00000033843 | sorlg00000010109 | mapkbp1-204 | 22 | 2358408 | 2383915 | + | mRNA | protein_coding |
| -48041 | ensorlt00000042428 | sorlg00000010109 | mapkbp1-201 | 22 | 2357712 | 2385971 | + | mRNA | protein_coding |
| -48041 | ensorlt00000029230 | sorlg00000010109 | mapkbp1-202 | 22 | 2357712 | 2385971 | + | mRNA | protein_coding |
| -48041 | ensorlt00000012677 | sorlg00000010109 | mapkbp1-203 | 22 | 2357712 | 2383915 | + | mRNA | protein_coding |
| 53751 | ensorlt00000034426 | sorlg00000023322 | 22 | 2441301 | 2460943 | - | mRNA | protein_coding | |
| 56037 | ensorlt00000035935 | sorlg00000023322 | 22 | 2442189 | 2463229 | - | mRNA | protein_coding | |
| 58521 | ensorlt00000045918 | sorlg00000021949 | 22 | 2465713 | 2469483 | + | mRNA | protein_coding | |
| 65257 | ensorlt00000031016 | sorlg00000027454 | 22 | 2472449 | 2477940 | + | mRNA | protein_coding | |
| 67086 | ensorlt00000027634 | sorlg00000023316 | 22 | 2474278 | 2474362 | + | snoRNA | snorna | |
| -67135 | ensorlt00000044746 | sorlg00000022155 | 22 | 2338618 | 2345348 | + | mRNA | protein_coding | |
| 69761 | ensorlt00000034617 | sorlg00000026312 | 22 | 2476953 | 2477037 | + | snoRNA | snorna | |
| 73639 | ensorlt00000012850 | sorlg00000010245 | 22 | 2480831 | 2485332 | + | mRNA | protein_coding | |
| 82582 | ensorlt00000012893 | sorlg00000010288 | psma3-201 | 22 | 2483540 | 2489774 | - | mRNA | protein_coding |
| 88381 | ensorlt00000012932 | sorlg00000010318 | snx6-201 | 22 | 2490424 | 2495573 | - | mRNA | protein_coding |
| -90268 | ensorlt00000012628 | sorlg00000010072 | 22 | 2315485 | 2319110 | + | mRNA | protein_coding | |
| 91947 | ensorlt00000012944 | sorlg00000010332 | cfl2-202 | 22 | 2497903 | 2499139 | - | mRNA | protein_coding |
| 94354 | ensorlt00000040763 | sorlg00000010332 | cfl2-201 | 22 | 2497903 | 2501546 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37