CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#13 16 7720134 7721846 1712 12 51 4.46922e-41
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 ensorlt00000030918 sorlg00000026370 16 7721754 7725479 + mRNA protein_coding
-897 ensorlt00000034615 sorlg00000028483 16 7719237 7726170 + mRNA protein_coding
-1396 ensorlt00000035976 sorlg00000029559 16 7718738 7727892 + mRNA protein_coding
-1795 ensorlt00000045648 sorlg00000027038 16 7714608 7718339 - mRNA protein_coding
-6328 ensorlt00000025923 sorlg00000020942 5s_rrna-201 16 7713806 7713924 + rRNA rrna
-9225 ensorlt00000046690 sorlg00000027739 16 7710909 7716160 + mRNA protein_coding
25191 ensorlt00000028352 sorlg00000003576 cnot10-202 16 7747037 7762281 + mRNA protein_coding
25191 ensorlt00000032710 sorlg00000003576 cnot10-201 16 7747037 7762281 + mRNA protein_coding
25202 ensorlt00000004467 sorlg00000003576 cnot10-203 16 7747048 7759356 + mRNA protein_coding
40528 ensorlt00000028648 sorlg00000003633 ano10a-201 16 7762374 7778680 + mRNA protein_coding
40528 ensorlt00000032025 sorlg00000003633 ano10a-204 16 7762374 7774851 + mRNA protein_coding
40528 ensorlt00000027847 sorlg00000003633 ano10a-205 16 7762374 7774851 + mRNA protein_coding
40528 ensorlt00000041779 sorlg00000003633 ano10a-206 16 7762374 7774851 + mRNA protein_coding
40528 ensorlt00000004531 sorlg00000003633 ano10a-203 16 7762374 7775269 + mRNA protein_coding
40528 ensorlt00000035529 sorlg00000003633 ano10a-202 16 7762374 7778680 + mRNA protein_coding
41609 ensorlt00000004533 sorlg00000003633 ano10a-207 16 7763455 7775269 + mRNA protein_coding
81669 ensorlt00000004544 sorlg00000003646 snrka-201 16 7781223 7803515 - mRNA protein_coding
84913 ensorlt00000004565 sorlg00000003663 16 7806759 7819607 + mRNA protein_coding
-90371 ensorlt00000046836 sorlg00000026489 chsy1-201 16 7629763 7636962 + mRNA protein_coding
-94247 ensorlt00000004395 sorlg00000003526 rrp15-201 16 7622321 7625887 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37