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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #28 | 6 | 1003683 | 1004493 | 810 | 12 | 26 | 5.25197e-34 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 53144 | ensorlt00000023961 | sorlg00000019230 | ptprz1a-201 | 6 | 999004 | 1057637 | - | mRNA | protein_coding |
| -83141 | ensorlt00000032648 | sorlg00000030143 | ano1-201 | 6 | 920542 | 990879 | + | mRNA | protein_coding |
| -95299 | ensorlt00000028612 | sorlg00000026455 | 6 | 897005 | 908384 | - | mRNA | protein_coding | |
| -95299 | ensorlt00000034185 | sorlg00000026455 | 6 | 901158 | 908384 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37