CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#6 15 1565040 1565987 947 12 30 1.6567e-47
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
12910 ensorlt00000023980 sorlg00000019248 galm-201 15 1571975 1578897 - mRNA protein_coding
21109 ensorlt00000024001 sorlg00000019266 cdk1-201 15 1587096 1590723 + mRNA protein_coding
30880 ensorlt00000044687 sorlg00000027844 ctu2-202 15 1587096 1596867 - mRNA protein_coding
31190 ensorlt00000028851 sorlg00000027844 ctu2-201 15 1587096 1597177 - mRNA protein_coding
38157 ensorlt00000024014 sorlg00000019278 rnf166-201 15 1604144 1613984 + mRNA protein_coding
-47996 ensorlt00000042317 sorlg00000019183 si:dkey-191g9.5-202 15 1517044 1560537 + mRNA protein_coding
56117 ensorlt00000023962 sorlg00000019226 cyp17-202 15 1615588 1622104 - mRNA protein_coding
56158 ensorlt00000023960 sorlg00000019226 cyp17-201 15 1614764 1622145 - mRNA protein_coding
59338 ensorlt00000023957 sorlg00000019226 cyp17-203 15 1615588 1625325 - mRNA protein_coding
60808 ensorlt00000042626 sorlg00000025880 borcs7-201 15 1626795 1627729 + mRNA protein_coding
-66827 ensorlt00000023904 sorlg00000019183 si:dkey-191g9.5-201 15 1498213 1560537 + mRNA protein_coding
87404 ensorlt00000043297 sorlg00000028435 15 1648079 1653391 - mRNA protein_coding
95527 ensorlt00000046918 sorlg00000025269 chchd1-201 15 1661514 1672180 + mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37