CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#32 6 4948049 4949056 1007 12 28 1.5493e-32
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
0 ensorlt00000043528 sorlg00000025444 6 4945100 4948063 - mRNA protein_coding
16631 ensorlt00000023204 sorlg00000018559 zgc:158868-201 6 4950567 4965687 - mRNA protein_coding
-30407 ensorlt00000023237 sorlg00000018585 bcar1-203 6 4917642 4942617 + mRNA protein_coding
-44456 ensorlt00000040494 sorlg00000018585 bcar1-202 6 4903593 4942617 + mRNA protein_coding
-66859 ensorlt00000044728 sorlg00000018585 bcar1-201 6 4881190 4942915 + mRNA protein_coding
73146 ensorlt00000023197 sorlg00000018545 lrp5-203 6 4974192 5022202 - mRNA protein_coding
75635 ensorlt00000046346 sorlg00000018545 lrp5-201 6 4971674 5024691 - mRNA protein_coding
75635 ensorlt00000036180 sorlg00000018545 lrp5-202 6 4971674 5024691 - mRNA protein_coding
-79987 ensorlt00000042084 sorlg00000018612 6 4868062 4877914 + mRNA protein_coding
-79987 ensorlt00000023269 sorlg00000018612 6 4868062 4877914 + mRNA protein_coding
-96796 ensorlt00000023300 sorlg00000018643 galn-201 6 4842078 4851253 - mRNA protein_coding
-97102 ensorlt00000023305 sorlg00000018643 galn-202 6 4842078 4850947 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37