CpG interval report generated on 16/07/20 with pycoMeth 0.4.14

Interval details
pvalue rank chromosome start end length number of samples number of CpGs adjusted pvalue
#24 2 22706556 22707650 1094 12 33 3.02372e-35
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
distance to tss transcript id gene id transcript name chromosome start end strand feature type transcript biotype
5505 ensorlt00000007125 sorlg00000005666 cdadc1-201 2 22704787 22713155 - mRNA protein_coding
-6146 ensorlt00000007111 sorlg00000005654 cab39l-201 2 22700410 22707641 + mRNA protein_coding
14565 ensorlt00000007132 sorlg00000005672 rcbtb1-202 2 22713176 22722215 - mRNA protein_coding
14887 ensorlt00000029038 sorlg00000005672 rcbtb1-201 2 22710815 22722537 - mRNA protein_coding
21243 ensorlt00000036205 sorlg00000025753 2 22728893 22795999 + mRNA protein_coding
48803 ensorlt00000039537 sorlg00000025753 2 22756453 22795999 + mRNA protein_coding
-57971 ensorlt00000030202 sorlg00000005630 mcf2la-208 2 22648585 22692691 + mRNA protein_coding
-65993 ensorlt00000035986 sorlg00000005630 mcf2la-206 2 22640563 22692691 + mRNA protein_coding
-65993 ensorlt00000007094 sorlg00000005630 mcf2la-207 2 22640563 22691714 + mRNA protein_coding
-66205 ensorlt00000028018 sorlg00000005481 2 22610888 22640351 - mRNA protein_coding
-66538 ensorlt00000007089 sorlg00000005630 mcf2la-205 2 22640018 22691714 + mRNA protein_coding
-69873 ensorlt00000030116 sorlg00000005630 mcf2la-204 2 22636683 22692691 + mRNA protein_coding
-76132 ensorlt00000041729 sorlg00000005630 mcf2la-203 2 22630424 22692691 + mRNA protein_coding
-76256 ensorlt00000027023 sorlg00000005630 mcf2la-201 2 22630300 22692039 + mRNA protein_coding
-76256 ensorlt00000028403 sorlg00000005630 mcf2la-202 2 22630300 22691714 + mRNA protein_coding
-78348 ensorlt00000006905 sorlg00000005481 2 22610888 22628208 - mRNA protein_coding
-86009 ensorlt00000036225 sorlg00000005481 2 22610888 22620547 - mRNA protein_coding

Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz

MD5 hash: f93dda71505ee953374fab70e1ac5c37