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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #30 | 14 | 29286331 | 29287419 | 1088 | 12 | 37 | 5.93718e-33 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -6650 | ensorlt00000019460 | sorlg00000015542 | galnt10-201 | 14 | 29234584 | 29279681 | - | mRNA | protein_coding |
| 13529 | ensorlt00000042885 | sorlg00000029231 | 14 | 29298395 | 29300948 | - | mRNA | protein_coding | |
| 23652 | ensorlt00000034962 | sorlg00000024921 | 14 | 29307506 | 29311071 | - | mRNA | protein_coding | |
| -59399 | ensorlt00000043680 | sorlg00000023108 | 14 | 29226932 | 29228455 | + | mRNA | protein_coding | |
| 64260 | ensorlt00000040008 | sorlg00000023427 | mfap3-201 | 14 | 29349354 | 29351679 | - | mRNA | protein_coding |
| 86842 | ensorlt00000019481 | sorlg00000015559 | fam114a2-201 | 14 | 29374261 | 29380591 | + | mRNA | protein_coding |
| 93360 | ensorlt00000019507 | sorlg00000015579 | cnot8-201 | 14 | 29380779 | 29386648 | + | mRNA | protein_coding |
| 94486 | ensorlt00000042567 | sorlg00000015579 | cnot8-202 | 14 | 29381905 | 29386648 | + | mRNA | protein_coding |
| -95222 | ensorlt00000031533 | sorlg00000029112 | 14 | 29189826 | 29191109 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37