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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #45 | 13 | 383208 | 383975 | 767 | 11 | 23 | 1.38324e-27 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 485 | ensorlt00000032832 | sorlg00000027102 | sst1.1-201 | 13 | 383149 | 384460 | - | mRNA | protein_coding |
| 8660 | ensorlt00000023877 | sorlg00000019158 | 13 | 390875 | 392635 | - | mRNA | protein_coding | |
| -48030 | ensorlt00000025754 | sorlg00000020795 | ece2b-201 | 13 | 311411 | 335178 | - | mRNA | protein_coding |
| -58067 | ensorlt00000045877 | sorlg00000020795 | ece2b-202 | 13 | 311411 | 325141 | - | mRNA | protein_coding |
| 81199 | ensorlt00000044286 | sorlg00000025981 | 13 | 465174 | 475493 | + | mRNA | protein_coding | |
| -82631 | ensorlt00000025751 | sorlg00000020793 | spcs2-201 | 13 | 296602 | 300577 | - | mRNA | protein_coding |
| -88352 | ensorlt00000033931 | sorlg00000020791 | abcg1-201 | 13 | 285578 | 294856 | - | mRNA | protein_coding |
| -88352 | ensorlt00000025749 | sorlg00000020791 | abcg1-202 | 13 | 286195 | 294856 | - | mRNA | protein_coding |
| 91967 | ensorlt00000036422 | sorlg00000029571 | 13 | 475942 | 477534 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37