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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #36 | 1 | 1608911 | 1609767 | 856 | 12 | 31 | 1.37006e-31 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -4370 | ensorlt00000000072 | sorlg00000000055 | 1 | 1576629 | 1604541 | - | mRNA | protein_coding | |
| 5523 | ensorlt00000040497 | sorlg00000000062 | arhgap19-201 | 1 | 1606039 | 1615290 | - | mRNA | protein_coding |
| 5523 | ensorlt00000032161 | sorlg00000000062 | arhgap19-202 | 1 | 1606039 | 1615290 | - | mRNA | protein_coding |
| 5523 | ensorlt00000000074 | sorlg00000000062 | arhgap19-203 | 1 | 1606039 | 1615290 | - | mRNA | protein_coding |
| 10626 | ensorlt00000000075 | sorlg00000000064 | si:ch211-133l11.10-202 | 1 | 1618265 | 1620393 | - | mRNA | protein_coding |
| 10634 | ensorlt00000047053 | sorlg00000000064 | si:ch211-133l11.10-201 | 1 | 1618265 | 1620401 | - | mRNA | protein_coding |
| 22871 | ensorlt00000047064 | sorlg00000027625 | dla-201 | 1 | 1632638 | 1640828 | + | mRNA | protein_coding |
| -50087 | ensorlt00000032515 | sorlg00000027690 | 1 | 1555542 | 1558824 | - | mRNA | protein_coding | |
| 51729 | ensorlt00000044437 | sorlg00000026423 | 1 | 1642274 | 1661496 | - | mRNA | protein_coding | |
| 52041 | ensorlt00000046946 | sorlg00000026423 | 1 | 1647230 | 1661808 | - | mRNA | protein_coding | |
| 75827 | ensorlt00000000086 | sorlg00000000069 | hk1-201 | 1 | 1661829 | 1685594 | - | mRNA | protein_coding |
| 81381 | ensorlt00000000089 | sorlg00000000075 | myom2a-201 | 1 | 1691148 | 1720250 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37