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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #8 | 2 | 12169442 | 12171060 | 1618 | 11 | 58 | 2.90651e-43 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -21573 | ensorlt00000028404 | sorlg00000029493 | 2 | 12141322 | 12147869 | - | mRNA | protein_coding | |
| 74237 | ensorlt00000000732 | sorlg00000028915 | 2 | 12198740 | 12245297 | - | mRNA | protein_coding | |
| 90821 | ensorlt00000000735 | sorlg00000027116 | 2 | 12256249 | 12261881 | - | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37