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CpG interval report generated on 16/07/20 with pycoMeth 0.4.14
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | adjusted pvalue |
|---|---|---|---|---|---|---|---|
| #39 | 24 | 10286328 | 10287069 | 741 | 11 | 27 | 2.55904e-30 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | ensorlt00000030196 | sorlg00000022999 | mfsd4b-201 | 24 | 10278218 | 10286742 | - | mRNA | protein_coding |
| 0 | ensorlt00000040621 | sorlg00000022999 | mfsd4b-202 | 24 | 10279539 | 10286742 | - | mRNA | protein_coding |
| 14121 | ensorlt00000019005 | sorlg00000015165 | mfsd4b-201 | 24 | 10292654 | 10301190 | - | mRNA | protein_coding |
| -45692 | ensorlt00000018996 | sorlg00000015155 | rev3l-201 | 24 | 10240636 | 10279322 | + | mRNA | protein_coding |
| 47189 | ensorlt00000019009 | sorlg00000015171 | slc16a10-201 | 24 | 10298686 | 10334258 | - | mRNA | protein_coding |
| -50492 | ensorlt00000018956 | sorlg00000015125 | 24 | 10235836 | 10243073 | + | mRNA | protein_coding | |
| 54585 | ensorlt00000019024 | sorlg00000015183 | rpf2-201 | 24 | 10336286 | 10341654 | - | mRNA | protein_coding |
| -57108 | ensorlt00000042752 | sorlg00000028764 | 24 | 10229220 | 10232247 | + | mRNA | protein_coding | |
| -58591 | ensorlt00000041477 | sorlg00000030604 | 24 | 10221782 | 10227737 | - | mRNA | protein_coding | |
| -59914 | ensorlt00000046904 | sorlg00000030604 | 24 | 10219908 | 10226414 | - | mRNA | protein_coding | |
| 65374 | ensorlt00000019051 | sorlg00000015204 | amd1-201 | 24 | 10344291 | 10352443 | - | mRNA | protein_coding |
| 65829 | ensorlt00000044271 | sorlg00000015247 | cdk19-202 | 24 | 10352898 | 10355576 | + | mRNA | protein_coding |
| 65829 | ensorlt00000019103 | sorlg00000015247 | cdk19-201 | 24 | 10352898 | 10383633 | + | mRNA | protein_coding |
| 66294 | ensorlt00000019101 | sorlg00000015247 | cdk19-203 | 24 | 10353363 | 10383633 | + | mRNA | protein_coding |
| -78853 | ensorlt00000018947 | sorlg00000015119 | naa30-201 | 24 | 10207475 | 10215451 | + | mRNA | protein_coding |
| -94225 | ensorlt00000018940 | sorlg00000015112 | 24 | 10192103 | 10204020 | + | mRNA | protein_coding |
Source file: /home/aleg/Programming/Packages/pycoMeth/docs/Comp_Report/data/Medaka_CGI_meth_comp.tsv.gz
MD5 hash: f93dda71505ee953374fab70e1ac5c37