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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #195 | 4 | 576907 | 578189 | 1282 | 3 | 41 | 2.87776e-14 | 1.46766e-12 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000666138 | sg00000283183 | ac116565.1-204 | 4 | 577614 | 584726 | + | lnc_RNA | lncrna |
| 0 | enst00000665587 | sg00000283183 | ac116565.1-203 | 4 | 577519 | 618076 | + | lnc_RNA | lncrna |
| 0 | enst00000663081 | sg00000283183 | ac116565.1-202 | 4 | 577459 | 584993 | + | lnc_RNA | lncrna |
| 0 | enst00000637674 | sg00000283183 | ac116565.1-201 | 4 | 577168 | 584866 | + | lnc_RNA | lncrna |
| -612 | enst00000610212 | sg00000273238 | tmem271-201 | 4 | 573880 | 576295 | - | mRNA | protein_coding |
| 1118 | enst00000670371 | sg00000283183 | ac116565.1-205 | 4 | 579307 | 584677 | + | lnc_RNA | lncrna |
| -39616 | enst00000505800 | sg00000174227 | pigg-210 | 4 | 537291 | 539523 | + | lnc_RNA | processed_transcript |
| -40202 | enst00000515237 | sg00000174227 | pigg-226 | 4 | 536705 | 539529 | + | lnc_RNA | processed_transcript |
| -43275 | enst00000508144 | sg00000174227 | pigg-214 | 4 | 533632 | 540196 | + | lnc_RNA | retained_intron |
| -44193 | enst00000504879 | sg00000174227 | pigg-209 | 4 | 532714 | 536314 | + | lnc_RNA | processed_transcript |
| -44793 | enst00000513192 | sg00000174227 | pigg-222 | 4 | 532114 | 539525 | + | lnc_RNA | retained_intron |
| -46067 | enst00000513239 | sg00000174227 | pigg-223 | 4 | 530840 | 539529 | + | lnc_RNA | retained_intron |
| 47395 | enst00000255622 | sg00000133256 | pde6b-201 | 4 | 625584 | 670782 | + | mRNA | protein_coding |
| 47417 | enst00000496514 | sg00000133256 | pde6b-212 | 4 | 625606 | 670753 | + | mRNA | protein_coding |
| -49957 | enst00000511666 | sg00000174227 | pigg-221 | 4 | 526950 | 539365 | + | lnc_RNA | retained_intron |
| -51339 | enst00000510235 | sg00000174227 | pigg-218 | 4 | 525568 | 530725 | + | mRNA | protein_coding |
| -51542 | enst00000503261 | sg00000174227 | pigg-206 | 4 | 525365 | 533981 | + | lnc_RNA | processed_transcript |
| -53075 | enst00000508669 | sg00000174227 | pigg-216 | 4 | 523832 | 527540 | + | lnc_RNA | retained_intron |
| -53387 | enst00000511247 | sg00000174227 | pigg-219 | 4 | 523520 | 524911 | + | lnc_RNA | processed_transcript |
| -55017 | enst00000508562 | sg00000174227 | pigg-215 | 4 | 521890 | 530498 | + | lnc_RNA | processed_transcript |
| -55150 | enst00000513679 | sg00000174227 | pigg-224 | 4 | 521757 | 522365 | + | lnc_RNA | processed_transcript |
| -55856 | enst00000507493 | sg00000174227 | pigg-213 | 4 | 521051 | 522313 | + | lnc_RNA | processed_transcript |
| -60837 | enst00000506898 | sg00000174227 | pigg-212 | 4 | 516070 | 522223 | + | lnc_RNA | processed_transcript |
| 73370 | enst00000465426 | sg00000133256 | pde6b-205 | 4 | 651559 | 654858 | + | mRNA | protein_coding |
| 73796 | enst00000474251 | sg00000133256 | pde6b-208 | 4 | 651985 | 654288 | + | lnc_RNA | retained_intron |
| 73796 | enst00000487902 | sg00000133256 | pde6b-210 | 4 | 651985 | 656943 | + | mRNA | protein_coding |
| 74084 | enst00000476034 | sg00000133256 | pde6b-209 | 4 | 652273 | 654669 | + | lnc_RNA | retained_intron |
| 74988 | enst00000488061 | sg00000133256 | pde6b-211 | 4 | 653177 | 654084 | + | mRNA | protein_coding |
| 74991 | enst00000429163 | sg00000133256 | pde6b-202 | 4 | 653180 | 670233 | + | mRNA | protein_coding |
| 75022 | enst00000467152 | sg00000133256 | pde6b-206 | 4 | 653211 | 654374 | + | lnc_RNA | retained_intron |
| 75071 | enst00000598370 | sg00000242686 | ac107464.1-201 | 4 | 652850 | 653260 | - | lnc_RNA | lncrna |
| 75600 | enst00000599030 | sg00000242686 | ac107464.1-202 | 4 | 652955 | 653789 | - | lnc_RNA | lncrna |
| 77288 | enst00000489312 | sg00000242686 | ac107464.1-204 | 4 | 653734 | 655477 | - | lnc_RNA | lncrna |
| -77553 | enst00000514953 | sg00000174227 | pigg-225 | 4 | 499354 | 501171 | + | lnc_RNA | processed_transcript |
| -77618 | enst00000509768 | sg00000174227 | pigg-217 | 4 | 499289 | 522843 | + | mRNA | protein_coding |
| -77649 | enst00000383028 | sg00000174227 | pigg-202 | 4 | 499258 | 539525 | + | mRNA | protein_coding |
| -77649 | enst00000506402 | sg00000174227 | pigg-211 | 4 | 499258 | 522837 | + | mRNA | nonsense_mediated_decay |
| -77664 | enst00000511448 | sg00000174227 | pigg-220 | 4 | 499243 | 507538 | + | mRNA | nonsense_mediated_decay |
| -77667 | enst00000502311 | sg00000174227 | pigg-204 | 4 | 499240 | 502329 | + | lnc_RNA | processed_transcript |
| -77667 | enst00000503111 | sg00000174227 | pigg-205 | 4 | 499240 | 522842 | + | mRNA | protein_coding |
| -77670 | enst00000504346 | sg00000174227 | pigg-208 | 4 | 499237 | 539528 | + | mRNA | protein_coding |
| -77686 | enst00000310340 | sg00000174227 | pigg-201 | 4 | 499221 | 539529 | + | mRNA | protein_coding |
| -77697 | enst00000504187 | sg00000174227 | pigg-207 | 4 | 499210 | 521961 | + | mRNA | nonsense_mediated_decay |
| -77697 | enst00000453061 | sg00000174227 | pigg-203 | 4 | 499210 | 540200 | + | mRNA | protein_coding |
| -77751 | enst00000511833 | sg00000182903 | znf721-205 | 4 | 439988 | 499156 | - | mRNA | protein_coding |
| -77805 | enst00000338977 | sg00000182903 | znf721-201 | 4 | 439988 | 499102 | - | mRNA | protein_coding |
| 78024 | enst00000468356 | sg00000242686 | ac107464.1-203 | 4 | 653059 | 656213 | - | lnc_RNA | lncrna |
| 83756 | enst00000609172 | sg00000272927 | ac107464.3-201 | 4 | 661209 | 661945 | - | lnc_RNA | lncrna |
| 85534 | enst00000460119 | sg00000133256 | pde6b-203 | 4 | 663723 | 664922 | + | lnc_RNA | retained_intron |
| 85581 | enst00000471824 | sg00000133256 | pde6b-207 | 4 | 663770 | 670193 | + | mRNA | protein_coding |
| 86721 | enst00000461490 | sg00000133256 | pde6b-204 | 4 | 664910 | 670314 | + | mRNA | protein_coding |
| 95334 | enst00000515116 | sg00000169020 | atp5me-204 | 4 | 672494 | 673523 | - | lnc_RNA | retained_intron |
| 95391 | enst00000506838 | sg00000215375 | myl5-206 | 4 | 673580 | 682027 | + | mRNA | protein_coding |
| 95632 | enst00000506525 | sg00000169020 | atp5me-203 | 4 | 672438 | 673821 | - | lnc_RNA | processed_transcript |
| 95752 | enst00000505477 | sg00000215375 | myl5-205 | 4 | 673941 | 682022 | + | mRNA | protein_coding |
| 95932 | enst00000515202 | sg00000169020 | atp5me-205 | 4 | 672436 | 674121 | - | lnc_RNA | retained_intron |
| 96087 | enst00000304312 | sg00000169020 | atp5me-201 | 4 | 672436 | 674276 | - | mRNA | protein_coding |
| 96141 | enst00000505852 | sg00000169020 | atp5me-202 | 4 | 672438 | 674330 | - | lnc_RNA | processed_transcript |
| 96314 | enst00000503300 | sg00000215375 | myl5-203 | 4 | 674503 | 682027 | + | mRNA | nonsense_mediated_decay |
| 96353 | enst00000502720 | sg00000215375 | myl5-202 | 4 | 674542 | 676481 | + | lnc_RNA | retained_intron |
| 96371 | enst00000511290 | sg00000215375 | myl5-208 | 4 | 674560 | 682028 | + | mRNA | protein_coding |
| 99733 | enst00000400159 | sg00000215375 | myl5-201 | 4 | 677922 | 682033 | + | mRNA | protein_coding |
| 99765 | enst00000513662 | sg00000215375 | myl5-209 | 4 | 677954 | 681990 | + | mRNA | nonsense_mediated_decay |
| 100000 | enst00000507804 | sg00000215375 | myl5-207 | 4 | 678189 | 680579 | + | mRNA | protein_coding |
| 102557 | enst00000503612 | sg00000215375 | myl5-204 | 4 | 680746 | 682028 | + | lnc_RNA | retained_intron |
| -102740 | enst00000505900 | sg00000182903 | znf721-202 | 4 | 444083 | 474167 | - | mRNA | protein_coding |
| -102765 | enst00000506646 | sg00000182903 | znf721-203 | 4 | 426789 | 474142 | - | mRNA | protein_coding |
| -102778 | enst00000451020 | sg00000251595 | abca11p-201 | 4 | 425435 | 474129 | - | lnc_RNA | processed_transcript |
| -102809 | enst00000507078 | sg00000182903 | znf721-204 | 4 | 435770 | 474098 | - | lnc_RNA | processed_transcript |
| -102856 | enst00000514396 | sg00000251595 | abca11p-204 | 4 | 425815 | 474051 | - | lnc_RNA | processed_transcript |
| -102856 | enst00000515578 | sg00000182903 | znf721-206 | 4 | 425815 | 474051 | - | mRNA | nonsense_mediated_decay |
| -102856 | enst00000507854 | sg00000251595 | abca11p-203 | 4 | 425815 | 474051 | - | lnc_RNA | processed_transcript |
| 106912 | enst00000512400 | sg00000169026 | slc49a3-207 | 4 | 681829 | 685101 | - | lnc_RNA | retained_intron |
| 109136 | enst00000503156 | sg00000169026 | slc49a3-204 | 4 | 681862 | 687325 | - | mRNA | protein_coding |
| 110791 | enst00000507165 | sg00000169026 | slc49a3-205 | 4 | 684483 | 688980 | - | mRNA | protein_coding |
| 110834 | enst00000513740 | sg00000169026 | slc49a3-208 | 4 | 686089 | 689023 | - | lnc_RNA | processed_transcript |
| 110954 | enst00000404286 | sg00000169026 | slc49a3-203 | 4 | 681831 | 689143 | - | mRNA | protein_coding |
| 110994 | enst00000512249 | sg00000169026 | slc49a3-206 | 4 | 683218 | 689183 | - | mRNA | protein_coding |
| 111002 | enst00000515118 | sg00000169026 | slc49a3-209 | 4 | 681858 | 689191 | - | mRNA | protein_coding |
| 111082 | enst00000347950 | sg00000169026 | slc49a3-202 | 4 | 681829 | 689271 | - | mRNA | protein_coding |
| 111252 | enst00000322224 | sg00000169026 | slc49a3-201 | 4 | 681829 | 689441 | - | mRNA | protein_coding |
| 127559 | enst00000419774 | sg00000185619 | pcgf3-203 | 4 | 705748 | 734943 | + | mRNA | protein_coding |
| 127576 | enst00000362003 | sg00000185619 | pcgf3-201 | 4 | 705765 | 770640 | + | mRNA | protein_coding |
| 127593 | enst00000475288 | sg00000185619 | pcgf3-209 | 4 | 705782 | 731345 | + | lnc_RNA | retained_intron |
| 127595 | enst00000470161 | sg00000185619 | pcgf3-208 | 4 | 705784 | 766608 | + | mRNA | protein_coding |
| 127595 | enst00000427463 | sg00000185619 | pcgf3-204 | 4 | 705784 | 735009 | + | mRNA | protein_coding |
| 127595 | enst00000482726 | sg00000185619 | pcgf3-210 | 4 | 705784 | 734842 | + | lnc_RNA | processed_transcript |
| 127595 | enst00000400151 | sg00000185619 | pcgf3-202 | 4 | 705784 | 734479 | + | mRNA | protein_coding |
| 127643 | enst00000430644 | sg00000185619 | pcgf3-205 | 4 | 705832 | 766599 | + | mRNA | nonsense_mediated_decay |
| 127686 | enst00000484141 | sg00000185619 | pcgf3-211 | 4 | 705875 | 737540 | + | lnc_RNA | retained_intron |
| 127754 | enst00000440452 | sg00000185619 | pcgf3-207 | 4 | 705943 | 767864 | + | mRNA | nonsense_mediated_decay |
| 145845 | enst00000502923 | sg00000248416 | ac107464.2-201 | 4 | 722275 | 724034 | - | lnc_RNA | lncrna |
| 146918 | enst00000433814 | sg00000185619 | pcgf3-206 | 4 | 725107 | 743538 | + | mRNA | protein_coding |
| -149025 | enst00000504019 | sg00000251595 | abca11p-202 | 4 | 425773 | 427882 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| -160370 | enst00000609771 | sg00000272885 | ac092574.1-201 | 4 | 416118 | 416537 | - | lnc_RNA | lncrna |
| 165676 | enst00000488032 | sg00000185619 | pcgf3-212 | 4 | 743865 | 761364 | + | lnc_RNA | processed_transcript |
| 179551 | enst00000607877 | sg00000272588 | ac139887.4-201 | 4 | 757022 | 757740 | - | lnc_RNA | lncrna |
| -183373 | enst00000514008 | sg00000249025 | znf519p4-201 | 4 | 393534 | 393658 | + | pseudogenic_transcript | processed_pseudogene |
| 186885 | enst00000454037 | sg00000233799 | ac139887.1-201 | 4 | 764487 | 765074 | - | lnc_RNA | lncrna |
| 190000 | enst00000620529 | sg00000185619 | pcgf3-213 | 4 | 768189 | 770087 | + | mRNA | protein_coding |
| -190733 | enst00000631198 | sg00000281016 | ac092574.2-201 | 4 | 386174 | 454070 | + | lnc_RNA | lncrna |
| -198868 | enst00000579770 | sg00000131127 | znf141-206 | 4 | 378039 | 383268 | + | lnc_RNA | processed_transcript |
| 203641 | enst00000507446 | sg00000249592 | ac139887.2-202 | 4 | 767141 | 781830 | - | lnc_RNA | lncrna |
| 203647 | enst00000652800 | sg00000249592 | ac139887.2-205 | 4 | 766240 | 781836 | - | lnc_RNA | lncrna |
| 203660 | enst00000503185 | sg00000249592 | ac139887.2-203 | 4 | 780149 | 781849 | - | lnc_RNA | lncrna |
| 203660 | enst00000503571 | sg00000249592 | ac139887.2-201 | 4 | 762387 | 781849 | - | lnc_RNA | lncrna |
| 203660 | enst00000660016 | sg00000249592 | ac139887.2-206 | 4 | 760202 | 781849 | - | lnc_RNA | lncrna |
| 203660 | enst00000503405 | sg00000249592 | ac139887.2-204 | 4 | 780246 | 781849 | - | lnc_RNA | lncrna |
| 203670 | enst00000665579 | sg00000249592 | ac139887.2-207 | 4 | 760487 | 781859 | - | lnc_RNA | lncrna |
| 214503 | enst00000506404 | sg00000168993 | cplx1-204 | 4 | 786390 | 792692 | - | lnc_RNA | retained_intron |
| 226719 | enst00000504062 | sg00000168993 | cplx1-202 | 4 | 786531 | 804908 | - | mRNA | protein_coding |
| -226750 | enst00000384910 | sg00000207642 | mir571-201 | 4 | 350157 | 350252 | + | miRNA | mirna |
| -233945 | enst00000506193 | sg00000250321 | ac079140.2-201 | 4 | 342821 | 342962 | - | pseudogenic_transcript | processed_pseudogene |
| -238324 | enst00000508039 | sg00000248564 | ac079140.1-201 | 4 | 338097 | 338583 | - | pseudogenic_transcript | processed_pseudogene |
| -239073 | enst00000505939 | sg00000131127 | znf141-204 | 4 | 337834 | 384864 | + | mRNA | protein_coding |
| -239074 | enst00000503699 | sg00000131127 | znf141-203 | 4 | 337833 | 358550 | + | lnc_RNA | processed_transcript |
| -239087 | enst00000512994 | sg00000131127 | znf141-205 | 4 | 337820 | 383971 | + | mRNA | protein_coding |
| -239093 | enst00000240499 | sg00000131127 | znf141-201 | 4 | 337814 | 384868 | + | mRNA | protein_coding |
| -239093 | enst00000366506 | sg00000131127 | znf141-202 | 4 | 337814 | 373026 | + | lnc_RNA | processed_transcript |
| -239474 | enst00000653800 | sg00000286705 | ac079140.6-201 | 4 | 307335 | 337433 | - | lnc_RNA | lncrna |
| -240121 | enst00000507448 | sg00000251535 | ac079140.4-201 | 4 | 336258 | 336786 | - | pseudogenic_transcript | processed_pseudogene |
| 247903 | enst00000505203 | sg00000168993 | cplx1-203 | 4 | 784958 | 826092 | - | mRNA | protein_coding |
| 247940 | enst00000304062 | sg00000168993 | cplx1-201 | 4 | 784957 | 826129 | - | mRNA | protein_coding |
| 259035 | enst00000568585 | sg00000260262 | ac139887.3-201 | 4 | 836512 | 837224 | - | lnc_RNA | lncrna |
| 268105 | enst00000651141 | sg00000286205 | ac139887.5-201 | 4 | 843963 | 846294 | - | lnc_RNA | lncrna |
| -271433 | enst00000419098 | sg00000186777 | znf732-201 | 4 | 270675 | 305474 | - | mRNA | protein_coding |
| 273484 | enst00000502799 | sg00000178950 | gak-203 | 4 | 849276 | 851673 | - | lnc_RNA | retained_intron |
| 273732 | enst00000504668 | sg00000178950 | gak-205 | 4 | 849277 | 851921 | - | mRNA | nonsense_mediated_decay |
| 275639 | enst00000511345 | sg00000178950 | gak-216 | 4 | 849278 | 853828 | - | lnc_RNA | retained_intron |
| -280752 | enst00000619749 | sg00000186777 | znf732-202 | 4 | 270675 | 296155 | - | mRNA | protein_coding |
| 288973 | enst00000511980 | sg00000178950 | gak-217 | 4 | 849308 | 867162 | - | mRNA | protein_coding |
| 289029 | enst00000510799 | sg00000178950 | gak-213 | 4 | 851853 | 867218 | - | mRNA | protein_coding |
| 291768 | enst00000515868 | sg00000178950 | gak-221 | 4 | 849278 | 869957 | - | lnc_RNA | retained_intron |
| 294584 | enst00000509566 | sg00000178950 | gak-211 | 4 | 849278 | 872773 | - | lnc_RNA | processed_transcript |
| 306201 | enst00000504947 | sg00000178950 | gak-206 | 4 | 882768 | 884390 | - | lnc_RNA | retained_intron |
| -306732 | enst00000507882 | sg00000251689 | ac079140.5-201 | 4 | 269866 | 270175 | - | pseudogenic_transcript | processed_pseudogene |
| -307376 | enst00000511111 | sg00000251188 | ac079140.3-201 | 4 | 268982 | 269531 | - | pseudogenic_transcript | processed_pseudogene |
| 316638 | enst00000504435 | sg00000178950 | gak-204 | 4 | 885783 | 894827 | - | lnc_RNA | retained_intron |
| 326592 | enst00000507991 | sg00000178950 | gak-210 | 4 | 897976 | 904781 | - | lnc_RNA | retained_intron |
| 335840 | enst00000507124 | sg00000178950 | gak-208 | 4 | 911719 | 914029 | - | lnc_RNA | retained_intron |
| 337489 | enst00000511983 | sg00000178950 | gak-218 | 4 | 911673 | 915678 | - | lnc_RNA | processed_transcript |
| 337546 | enst00000511229 | sg00000178950 | gak-215 | 4 | 904687 | 915735 | - | mRNA | protein_coding |
| 337567 | enst00000510022 | sg00000178950 | gak-212 | 4 | 904653 | 915756 | - | lnc_RNA | processed_transcript |
| 353998 | enst00000618573 | sg00000178950 | gak-222 | 4 | 849676 | 932187 | - | mRNA | protein_coding |
| 354031 | enst00000513935 | sg00000178950 | gak-220 | 4 | 912462 | 932220 | - | lnc_RNA | retained_intron |
| 354127 | enst00000314167 | sg00000178950 | gak-201 | 4 | 849277 | 932316 | - | mRNA | protein_coding |
| 354128 | enst00000512325 | sg00000178950 | gak-219 | 4 | 898062 | 932317 | - | mRNA | nonsense_mediated_decay |
| 354128 | enst00000507580 | sg00000178950 | gak-209 | 4 | 893943 | 932317 | - | mRNA | nonsense_mediated_decay |
| 354138 | enst00000502656 | sg00000178950 | gak-202 | 4 | 896469 | 932327 | - | mRNA | protein_coding |
| 354138 | enst00000628912 | sg00000178950 | gak-223 | 4 | 912085 | 932327 | - | mRNA | protein_coding |
| 354176 | enst00000505819 | sg00000178950 | gak-207 | 4 | 893419 | 932365 | - | mRNA | nonsense_mediated_decay |
| 354184 | enst00000511163 | sg00000178950 | gak-214 | 4 | 849278 | 932373 | - | mRNA | protein_coding |
| 354198 | enst00000507319 | sg00000127419 | tmem175-211 | 4 | 932387 | 951259 | + | mRNA | protein_coding |
| 354215 | enst00000513952 | sg00000127419 | tmem175-216 | 4 | 932404 | 958656 | + | mRNA | nonsense_mediated_decay |
| 354237 | enst00000514453 | sg00000127419 | tmem175-217 | 4 | 932426 | 953303 | + | mRNA | protein_coding |
| 354243 | enst00000505734 | sg00000127419 | tmem175-209 | 4 | 932432 | 948589 | + | lnc_RNA | retained_intron |
| 354255 | enst00000515492 | sg00000127419 | tmem175-219 | 4 | 932444 | 957863 | + | mRNA | protein_coding |
| 354257 | enst00000504744 | sg00000127419 | tmem175-207 | 4 | 932446 | 952436 | + | mRNA | nonsense_mediated_decay |
| 354271 | enst00000509508 | sg00000127419 | tmem175-213 | 4 | 932460 | 955816 | + | mRNA | protein_coding |
| 354271 | enst00000452360 | sg00000127419 | tmem175-203 | 4 | 932460 | 956892 | + | lnc_RNA | retained_intron |
| 354271 | enst00000264771 | sg00000127419 | tmem175-201 | 4 | 932460 | 958656 | + | mRNA | protein_coding |
| 354272 | enst00000515876 | sg00000127419 | tmem175-221 | 4 | 932461 | 955944 | + | lnc_RNA | retained_intron |
| 354273 | enst00000513682 | sg00000127419 | tmem175-215 | 4 | 932462 | 951705 | + | mRNA | nonsense_mediated_decay |
| 354276 | enst00000515740 | sg00000127419 | tmem175-220 | 4 | 932465 | 958575 | + | mRNA | protein_coding |
| 354283 | enst00000438836 | sg00000127419 | tmem175-202 | 4 | 932472 | 958656 | + | lnc_RNA | retained_intron |
| 354286 | enst00000504505 | sg00000127419 | tmem175-206 | 4 | 932475 | 950491 | + | lnc_RNA | retained_intron |
| 354289 | enst00000508204 | sg00000127419 | tmem175-212 | 4 | 932478 | 958509 | + | mRNA | protein_coding |
| 354291 | enst00000510493 | sg00000127419 | tmem175-214 | 4 | 932480 | 958079 | + | mRNA | protein_coding |
| 354293 | enst00000514546 | sg00000127419 | tmem175-218 | 4 | 932482 | 952389 | + | mRNA | protein_coding |
| 354298 | enst00000504850 | sg00000127419 | tmem175-208 | 4 | 932487 | 948510 | + | lnc_RNA | retained_intron |
| 354328 | enst00000622959 | sg00000127419 | tmem175-222 | 4 | 932517 | 958652 | + | mRNA | protein_coding |
| -358257 | enst00000398732 | sg00000198155 | znf876p-202 | 4 | 218650 | 254841 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -364297 | enst00000356347 | sg00000198155 | znf876p-201 | 4 | 212610 | 255985 | + | lnc_RNA | processed_transcript |
| 370222 | enst00000504180 | sg00000127419 | tmem175-205 | 4 | 948411 | 953354 | + | lnc_RNA | processed_transcript |
| -371898 | enst00000507880 | sg00000250892 | ac108475.1-201 | 4 | 201409 | 205009 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 372262 | enst00000502513 | sg00000127419 | tmem175-204 | 4 | 950451 | 951973 | + | lnc_RNA | retained_intron |
| 374222 | enst00000506669 | sg00000127419 | tmem175-210 | 4 | 952411 | 955491 | + | lnc_RNA | retained_intron |
| 384251 | enst00000515182 | sg00000145214 | dgkq-205 | 4 | 960615 | 962440 | - | mRNA | protein_coding |
| 388986 | enst00000502309 | sg00000145214 | dgkq-202 | 4 | 963142 | 967175 | - | lnc_RNA | processed_transcript |
| 395133 | enst00000509465 | sg00000145214 | dgkq-203 | 4 | 958888 | 973322 | - | mRNA | protein_coding |
| 395380 | enst00000273814 | sg00000145214 | dgkq-201 | 4 | 958887 | 973569 | - | mRNA | protein_coding |
| 408706 | enst00000510286 | sg00000145214 | dgkq-204 | 4 | 968291 | 986895 | - | mRNA | protein_coding |
| 408808 | enst00000247933 | sg00000127415 | idua-201 | 4 | 986997 | 1004529 | + | mRNA | protein_coding |
| 408855 | enst00000514224 | sg00000127415 | idua-210 | 4 | 987044 | 1004564 | + | mRNA | protein_coding |
| 408855 | enst00000514698 | sg00000127415 | idua-212 | 4 | 987044 | 1004505 | + | lnc_RNA | retained_intron |
| 408855 | enst00000502910 | sg00000127415 | idua-203 | 4 | 987044 | 1002003 | + | mRNA | protein_coding |
| 408877 | enst00000508168 | sg00000127415 | idua-206 | 4 | 987066 | 1001138 | + | lnc_RNA | retained_intron |
| 408887 | enst00000506561 | sg00000127415 | idua-205 | 4 | 987076 | 1001179 | + | lnc_RNA | retained_intron |
| 408898 | enst00000504568 | sg00000127415 | idua-204 | 4 | 987087 | 1001715 | + | mRNA | protein_coding |
| 409726 | enst00000509744 | sg00000127415 | idua-207 | 4 | 987915 | 989623 | + | lnc_RNA | processed_transcript |
| 413006 | enst00000513138 | sg00000145217 | slc26a1-204 | 4 | 990621 | 991195 | - | lnc_RNA | processed_transcript |
| 413636 | enst00000514192 | sg00000127415 | idua-209 | 4 | 991825 | 1002069 | + | lnc_RNA | processed_transcript |
| 413683 | enst00000509948 | sg00000127415 | idua-208 | 4 | 991872 | 1001825 | + | lnc_RNA | processed_transcript |
| 415187 | enst00000398520 | sg00000145217 | slc26a1-203 | 4 | 979073 | 993376 | - | mRNA | protein_coding |
| 415215 | enst00000398516 | sg00000145217 | slc26a1-202 | 4 | 987657 | 993404 | - | mRNA | protein_coding |
| 415247 | enst00000361661 | sg00000145217 | slc26a1-201 | 4 | 987657 | 993436 | - | mRNA | protein_coding |
| 415251 | enst00000622731 | sg00000145217 | slc26a1-205 | 4 | 979406 | 993440 | - | mRNA | protein_coding |
| 421521 | enst00000652070 | sg00000127415 | idua-213 | 4 | 999710 | 1004505 | + | lnc_RNA | processed_transcript |
| 424552 | enst00000502829 | sg00000127415 | idua-202 | 4 | 1002741 | 1003389 | + | lnc_RNA | retained_intron |
| 425240 | enst00000514417 | sg00000127415 | idua-211 | 4 | 1003429 | 1003724 | + | lnc_RNA | retained_intron |
| -427169 | enst00000618815 | sg00000275426 | ac253576.2-201 | 4 | 149738 | 150317 | + | lnc_RNA | lncrna |
| 431747 | enst00000512562 | sg00000127418 | fgfrl1-207 | 4 | 1009936 | 1011027 | + | lnc_RNA | processed_transcript |
| 431790 | enst00000398484 | sg00000127418 | fgfrl1-202 | 4 | 1009979 | 1026891 | + | mRNA | protein_coding |
| 433437 | enst00000510644 | sg00000127418 | fgfrl1-205 | 4 | 1011626 | 1026898 | + | mRNA | protein_coding |
| 433957 | enst00000504138 | sg00000127418 | fgfrl1-203 | 4 | 1012146 | 1025347 | + | mRNA | protein_coding |
| 433966 | enst00000512174 | sg00000127418 | fgfrl1-206 | 4 | 1012155 | 1022363 | + | mRNA | protein_coding |
| 433967 | enst00000507339 | sg00000127418 | fgfrl1-204 | 4 | 1012156 | 1023840 | + | mRNA | protein_coding |
| 434262 | enst00000264748 | sg00000127418 | fgfrl1-201 | 4 | 1012451 | 1026897 | + | mRNA | protein_coding |
| 449489 | enst00000503095 | sg00000250259 | ac019103.1-201 | 4 | 1027678 | 1028972 | + | lnc_RNA | lncrna |
| -452369 | enst00000609714 | sg00000250312 | znf718-202 | 4 | 124538 | 162701 | + | mRNA | protein_coding |
| -452406 | enst00000642529 | sg00000250312 | znf718-203 | 4 | 124501 | 202303 | + | mRNA | nonsense_mediated_decay |
| -452406 | enst00000510175 | sg00000250312 | znf718-201 | 4 | 124501 | 164162 | + | mRNA | protein_coding |
| -469793 | enst00000511645 | sg00000250238 | ac253576.1-201 | 4 | 105959 | 107114 | - | pseudogenic_transcript | processed_pseudogene |
| 480238 | enst00000514024 | sg00000178222 | rnf212-214 | 4 | 1056250 | 1058427 | - | lnc_RNA | retained_intron |
| 495565 | enst00000508633 | sg00000178222 | rnf212-210 | 4 | 1056866 | 1073754 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc