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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #192 | 3 | 50364514 | 50365648 | 1134 | 3 | 37 | 2.38953e-14 | 1.2377e-12 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000606259 | sg00000271858 | z84492.1-201 | 3 | 50365334 | 50367845 | + | lnc_RNA | lncrna |
| 0 | enst00000607121 | sg00000271858 | z84492.1-202 | 3 | 50365374 | 50368197 | + | lnc_RNA | lncrna |
| 0 | enst00000606665 | sg00000271858 | z84492.1-203 | 3 | 50365385 | 50368197 | + | lnc_RNA | lncrna |
| 0 | enst00000607583 | sg00000271858 | z84492.1-204 | 3 | 50365396 | 50367463 | + | lnc_RNA | lncrna |
| 134 | enst00000483620 | sg00000007402 | cacna2d2-207 | 3 | 50362855 | 50365782 | - | lnc_RNA | retained_intron |
| 575 | enst00000607088 | sg00000271858 | z84492.1-205 | 3 | 50366223 | 50368197 | + | lnc_RNA | lncrna |
| 1817 | enst00000607362 | sg00000271858 | z84492.1-206 | 3 | 50367465 | 50368197 | + | lnc_RNA | lncrna |
| -4993 | enst00000266025 | sg00000126062 | tmem115-201 | 3 | 50354750 | 50359521 | - | mRNA | protein_coding |
| -13317 | enst00000490926 | sg00000114395 | cyb561d2-206 | 3 | 50351197 | 50358460 | + | lnc_RNA | processed_transcript |
| -13622 | enst00000606589 | sg00000272104 | z84492.2-201 | 3 | 50350892 | 50367923 | + | mRNA | protein_coding |
| -13641 | enst00000419046 | sg00000114395 | cyb561d2-203 | 3 | 50350873 | 50353393 | + | lnc_RNA | processed_transcript |
| -13656 | enst00000418577 | sg00000114395 | cyb561d2-202 | 3 | 50350858 | 50354032 | + | mRNA | protein_coding |
| -13669 | enst00000232508 | sg00000114395 | cyb561d2-201 | 3 | 50350845 | 50354069 | + | mRNA | protein_coding |
| -13669 | enst00000424512 | sg00000114395 | cyb561d2-204 | 3 | 50350845 | 50354052 | + | mRNA | protein_coding |
| -13688 | enst00000667046 | sg00000114388 | nprl2-218 | 3 | 50347522 | 50350826 | - | mRNA | nonsense_mediated_decay |
| -13693 | enst00000493907 | sg00000114388 | nprl2-217 | 3 | 50349435 | 50350821 | - | lnc_RNA | retained_intron |
| -13705 | enst00000667631 | sg00000114388 | nprl2-219 | 3 | 50347510 | 50350809 | - | lnc_RNA | retained_intron |
| -13728 | enst00000671487 | sg00000114388 | nprl2-220 | 3 | 50347516 | 50350786 | - | lnc_RNA | retained_intron |
| -13732 | enst00000467294 | sg00000114388 | nprl2-209 | 3 | 50347488 | 50350782 | - | lnc_RNA | retained_intron |
| -13732 | enst00000461020 | sg00000114388 | nprl2-208 | 3 | 50347488 | 50350782 | - | lnc_RNA | retained_intron |
| -13733 | enst00000448302 | sg00000114388 | nprl2-206 | 3 | 50348316 | 50350781 | - | mRNA | nonsense_mediated_decay |
| -13733 | enst00000418825 | sg00000114388 | nprl2-202 | 3 | 50348146 | 50350781 | - | mRNA | nonsense_mediated_decay |
| -13733 | enst00000433381 | sg00000114388 | nprl2-204 | 3 | 50347518 | 50350781 | - | mRNA | nonsense_mediated_decay |
| -13735 | enst00000476064 | sg00000114388 | nprl2-211 | 3 | 50347330 | 50350779 | - | lnc_RNA | retained_intron |
| -13739 | enst00000469839 | sg00000114388 | nprl2-210 | 3 | 50349156 | 50350775 | - | lnc_RNA | retained_intron |
| -13739 | enst00000232501 | sg00000114388 | nprl2-201 | 3 | 50347330 | 50350775 | - | mRNA | protein_coding |
| -13747 | enst00000487632 | sg00000114388 | nprl2-214 | 3 | 50347488 | 50350767 | - | lnc_RNA | retained_intron |
| -13748 | enst00000479512 | sg00000114388 | nprl2-212 | 3 | 50347499 | 50350766 | - | lnc_RNA | retained_intron |
| -13760 | enst00000451194 | sg00000114388 | nprl2-207 | 3 | 50347491 | 50350754 | - | mRNA | nonsense_mediated_decay |
| -13769 | enst00000433999 | sg00000114388 | nprl2-205 | 3 | 50348161 | 50350745 | - | mRNA | nonsense_mediated_decay |
| -13810 | enst00000429366 | sg00000114388 | nprl2-203 | 3 | 50347490 | 50350704 | - | mRNA | nonsense_mediated_decay |
| -13819 | enst00000425346 | sg00000114395 | cyb561d2-205 | 3 | 50350695 | 50354079 | + | mRNA | protein_coding |
| -14149 | enst00000480296 | sg00000114388 | nprl2-213 | 3 | 50347491 | 50350365 | - | lnc_RNA | retained_intron |
| -15385 | enst00000492805 | sg00000114388 | nprl2-215 | 3 | 50348253 | 50349129 | - | lnc_RNA | retained_intron |
| -15728 | enst00000493465 | sg00000114388 | nprl2-216 | 3 | 50347494 | 50348786 | - | lnc_RNA | processed_transcript |
| -18782 | enst00000360165 | sg00000004838 | zmynd10-202 | 3 | 50341114 | 50345732 | - | mRNA | protein_coding |
| -18782 | enst00000231749 | sg00000004838 | zmynd10-201 | 3 | 50341112 | 50345732 | - | mRNA | protein_coding |
| -18793 | enst00000442887 | sg00000004838 | zmynd10-204 | 3 | 50342037 | 50345721 | - | mRNA | protein_coding |
| -18793 | enst00000431869 | sg00000004838 | zmynd10-203 | 3 | 50343401 | 50345721 | - | mRNA | nonsense_mediated_decay |
| -18833 | enst00000468182 | sg00000004838 | zmynd10-206 | 3 | 50344839 | 50345681 | - | lnc_RNA | processed_transcript |
| -18842 | enst00000443080 | sg00000004838 | zmynd10-205 | 3 | 50342522 | 50345672 | - | mRNA | nonsense_mediated_decay |
| -20478 | enst00000478269 | sg00000004838 | zmynd10-208 | 3 | 50343169 | 50344036 | - | lnc_RNA | retained_intron |
| -21346 | enst00000475688 | sg00000004838 | zmynd10-207 | 3 | 50341115 | 50343168 | - | lnc_RNA | retained_intron |
| -22066 | enst00000490675 | sg00000004838 | zmynd10-209 | 3 | 50341110 | 50342448 | - | lnc_RNA | processed_transcript |
| -23408 | enst00000440013 | sg00000235058 | zmynd10-as1-201 | 3 | 50341106 | 50345697 | + | lnc_RNA | lncrna |
| -23534 | enst00000478619 | sg00000068028 | rassf1-206 | 3 | 50336377 | 50340980 | - | lnc_RNA | retained_intron |
| -23578 | enst00000616212 | sg00000068028 | rassf1-210 | 3 | 50329786 | 50340936 | - | mRNA | protein_coding |
| -23602 | enst00000482447 | sg00000068028 | rassf1-207 | 3 | 50329788 | 50340912 | - | mRNA | nonsense_mediated_decay |
| -23602 | enst00000359365 | sg00000068028 | rassf1-203 | 3 | 50329788 | 50340912 | - | mRNA | protein_coding |
| -23673 | enst00000395117 | sg00000068028 | rassf1-204 | 3 | 50329788 | 50340841 | - | mRNA | nonsense_mediated_decay |
| -23673 | enst00000357043 | sg00000068028 | rassf1-202 | 3 | 50329788 | 50340841 | - | mRNA | protein_coding |
| -23684 | enst00000488024 | sg00000068028 | rassf1-208 | 3 | 50336570 | 50340830 | - | lnc_RNA | processed_transcript |
| -26226 | enst00000494145 | sg00000068028 | rassf1-209 | 3 | 50336800 | 50338288 | - | lnc_RNA | retained_intron |
| -26281 | enst00000395126 | sg00000068028 | rassf1-205 | 3 | 50329788 | 50338233 | - | mRNA | protein_coding |
| -27003 | enst00000629828 | sg00000281358 | rassf1-as1-201 | 3 | 50337511 | 50338300 | + | lnc_RNA | lncrna |
| -27050 | enst00000327761 | sg00000068028 | rassf1-201 | 3 | 50329782 | 50337464 | - | mRNA | protein_coding |
| -36263 | enst00000421918 | sg00000114383 | tusc2-203 | 3 | 50326008 | 50328251 | - | mRNA | nonsense_mediated_decay |
| -36276 | enst00000463304 | sg00000114383 | tusc2-206 | 3 | 50326090 | 50328238 | - | lnc_RNA | processed_transcript |
| -36291 | enst00000232496 | sg00000114383 | tusc2-201 | 3 | 50324909 | 50328223 | - | mRNA | protein_coding |
| -36308 | enst00000454201 | sg00000114383 | tusc2-204 | 3 | 50326008 | 50328206 | - | mRNA | nonsense_mediated_decay |
| -36319 | enst00000417867 | sg00000114383 | tusc2-202 | 3 | 50326356 | 50328195 | - | mRNA | nonsense_mediated_decay |
| -36357 | enst00000462137 | sg00000114383 | tusc2-205 | 3 | 50320027 | 50328157 | - | lnc_RNA | processed_transcript |
| -41732 | enst00000447092 | sg00000068001 | hyal2-208 | 3 | 50317790 | 50322782 | - | mRNA | protein_coding |
| -41737 | enst00000442581 | sg00000068001 | hyal2-207 | 3 | 50317812 | 50322777 | - | mRNA | protein_coding |
| -41769 | enst00000357750 | sg00000068001 | hyal2-201 | 3 | 50317808 | 50322745 | - | mRNA | protein_coding |
| -41773 | enst00000428028 | sg00000068001 | hyal2-206 | 3 | 50320260 | 50322741 | - | mRNA | protein_coding |
| -41773 | enst00000481597 | sg00000068001 | hyal2-210 | 3 | 50318589 | 50322741 | - | lnc_RNA | retained_intron |
| -42801 | enst00000395139 | sg00000068001 | hyal2-202 | 3 | 50317809 | 50321713 | - | mRNA | protein_coding |
| -43297 | enst00000458018 | sg00000068001 | hyal2-209 | 3 | 50320127 | 50321217 | - | mRNA | protein_coding |
| -43365 | enst00000415028 | sg00000068001 | hyal2-203 | 3 | 50320347 | 50321149 | - | mRNA | protein_coding |
| -43527 | enst00000424190 | sg00000068001 | hyal2-204 | 3 | 50320137 | 50320987 | - | mRNA | protein_coding |
| -43566 | enst00000426286 | sg00000068001 | hyal2-205 | 3 | 50320246 | 50320948 | - | mRNA | protein_coding |
| -52133 | enst00000320295 | sg00000114378 | hyal1-202 | 3 | 50299894 | 50312381 | - | mRNA | protein_coding |
| 54133 | enst00000365452 | sg00000202322 | rna5sp131-201 | 3 | 50419781 | 50419899 | + | pseudogenic_transcript | rrna_pseudogene |
| -60398 | enst00000452672 | sg00000114378 | hyal1-207 | 3 | 50302749 | 50304116 | - | mRNA | protein_coding |
| -60427 | enst00000618175 | sg00000114378 | hyal1-209 | 3 | 50299890 | 50304087 | - | mRNA | protein_coding |
| -60940 | enst00000418723 | sg00000114378 | hyal1-205 | 3 | 50302647 | 50303574 | - | mRNA | protein_coding |
| -60940 | enst00000395144 | sg00000114378 | hyal1-204 | 3 | 50299893 | 50303574 | - | mRNA | protein_coding |
| -60941 | enst00000447605 | sg00000114378 | hyal1-206 | 3 | 50300482 | 50303573 | - | mRNA | protein_coding |
| -60941 | enst00000395143 | sg00000114378 | hyal1-203 | 3 | 50300311 | 50303573 | - | mRNA | protein_coding |
| -60941 | enst00000457214 | sg00000114378 | hyal1-208 | 3 | 50300482 | 50303573 | - | mRNA | protein_coding |
| -60942 | enst00000266031 | sg00000114378 | hyal1-201 | 3 | 50299890 | 50303572 | - | mRNA | protein_coding |
| -65093 | enst00000443094 | sg00000243477 | naa80-204 | 3 | 50296418 | 50299421 | - | mRNA | protein_coding |
| -65098 | enst00000354862 | sg00000243477 | naa80-201 | 3 | 50296402 | 50299416 | - | mRNA | protein_coding |
| -65109 | enst00000336307 | sg00000186792 | hyal3-201 | 3 | 50292832 | 50299405 | - | mRNA | protein_coding |
| -65113 | enst00000415204 | sg00000186792 | hyal3-203 | 3 | 50292981 | 50299401 | - | mRNA | protein_coding |
| -65114 | enst00000443842 | sg00000243477 | naa80-205 | 3 | 50296452 | 50299400 | - | mRNA | protein_coding |
| -65282 | enst00000513170 | sg00000186792 | hyal3-206 | 3 | 50293045 | 50299232 | - | mRNA | protein_coding |
| -65282 | enst00000450982 | sg00000186792 | hyal3-205 | 3 | 50293045 | 50299232 | - | mRNA | protein_coding |
| -65397 | enst00000450489 | sg00000243477 | naa80-206 | 3 | 50297205 | 50299117 | - | mRNA | protein_coding |
| -65625 | enst00000452674 | sg00000243477 | naa80-207 | 3 | 50297436 | 50298889 | - | mRNA | protein_coding |
| -65625 | enst00000442620 | sg00000243477 | naa80-203 | 3 | 50297293 | 50298889 | - | mRNA | protein_coding |
| -65655 | enst00000417393 | sg00000243477 | naa80-202 | 3 | 50296404 | 50298859 | - | mRNA | protein_coding |
| -65655 | enst00000359051 | sg00000186792 | hyal3-202 | 3 | 50292831 | 50298859 | - | mRNA | protein_coding |
| -65683 | enst00000621157 | sg00000186792 | hyal3-207 | 3 | 50292832 | 50298831 | - | mRNA | protein_coding |
| -68741 | enst00000435141 | sg00000186792 | hyal3-204 | 3 | 50295124 | 50295773 | - | mRNA | protein_coding |
| -71596 | enst00000436390 | sg00000214706 | ifrd2-204 | 3 | 50287743 | 50292918 | - | mRNA | protein_coding |
| -71919 | enst00000417626 | sg00000214706 | ifrd2-202 | 3 | 50287732 | 50292595 | - | mRNA | protein_coding |
| -72078 | enst00000462001 | sg00000214706 | ifrd2-206 | 3 | 50290009 | 50292436 | - | lnc_RNA | retained_intron |
| -72090 | enst00000474556 | sg00000214706 | ifrd2-210 | 3 | 50287941 | 50292424 | - | lnc_RNA | retained_intron |
| -72094 | enst00000489569 | sg00000214706 | ifrd2-214 | 3 | 50289248 | 50292420 | - | lnc_RNA | retained_intron |
| -72125 | enst00000414734 | sg00000214706 | ifrd2-201 | 3 | 50288799 | 50292389 | - | mRNA | nonsense_mediated_decay |
| -72458 | enst00000468737 | sg00000214706 | ifrd2-208 | 3 | 50290181 | 50292056 | - | lnc_RNA | processed_transcript |
| -72465 | enst00000484043 | sg00000214706 | ifrd2-212 | 3 | 50290006 | 50292049 | - | lnc_RNA | processed_transcript |
| -74263 | enst00000438296 | sg00000214706 | ifrd2-205 | 3 | 50288430 | 50290251 | - | mRNA | nonsense_mediated_decay |
| -74444 | enst00000483071 | sg00000214706 | ifrd2-211 | 3 | 50289208 | 50290070 | - | lnc_RNA | retained_intron |
| -74913 | enst00000464258 | sg00000214706 | ifrd2-207 | 3 | 50288131 | 50289601 | - | lnc_RNA | retained_intron |
| -75251 | enst00000469855 | sg00000214706 | ifrd2-209 | 3 | 50288663 | 50289263 | - | lnc_RNA | retained_intron |
| -75288 | enst00000492387 | sg00000214706 | ifrd2-215 | 3 | 50288512 | 50289226 | - | lnc_RNA | retained_intron |
| -75454 | enst00000486322 | sg00000214706 | ifrd2-213 | 3 | 50288371 | 50289060 | - | lnc_RNA | retained_intron |
| -75875 | enst00000426499 | sg00000214706 | ifrd2-203 | 3 | 50287743 | 50288639 | - | mRNA | protein_coding |
| -85427 | enst00000316436 | sg00000179564 | lsmem2-201 | 3 | 50279087 | 50288114 | + | mRNA | protein_coding |
| -89880 | enst00000416295 | sg00000012171 | sema3b-201 | 3 | 50274634 | 50276444 | + | lnc_RNA | retained_intron |
| -91168 | enst00000419007 | sg00000012171 | sema3b-203 | 3 | 50273346 | 50277161 | + | lnc_RNA | retained_intron |
| -91278 | enst00000612981 | sg00000283848 | mir6872-201 | 3 | 50273236 | 50273297 | + | miRNA | mirna |
| -91354 | enst00000418576 | sg00000012171 | sema3b-202 | 3 | 50273160 | 50276876 | + | mRNA | protein_coding |
| -91357 | enst00000456210 | sg00000012171 | sema3b-208 | 3 | 50273157 | 50277546 | + | lnc_RNA | processed_transcript |
| -91362 | enst00000434030 | sg00000012171 | sema3b-205 | 3 | 50273152 | 50274340 | + | lnc_RNA | retained_intron |
| -91384 | enst00000439487 | sg00000012171 | sema3b-206 | 3 | 50273130 | 50274530 | + | lnc_RNA | retained_intron |
| -91395 | enst00000456560 | sg00000012171 | sema3b-209 | 3 | 50273119 | 50277165 | + | mRNA | protein_coding |
| -93953 | enst00000441915 | sg00000012171 | sema3b-207 | 3 | 50270561 | 50277170 | + | lnc_RNA | retained_intron |
| -95300 | enst00000611067 | sg00000012171 | sema3b-210 | 3 | 50269214 | 50276706 | + | mRNA | protein_coding |
| -95345 | enst00000433753 | sg00000012171 | sema3b-204 | 3 | 50269169 | 50277142 | + | mRNA | protein_coding |
| -95349 | enst00000612509 | sg00000012171 | sema3b-211 | 3 | 50269165 | 50273680 | + | lnc_RNA | retained_intron |
| -95367 | enst00000616701 | sg00000012171 | sema3b-212 | 3 | 50269147 | 50277546 | + | mRNA | protein_coding |
| -95640 | enst00000619119 | sg00000012171 | sema3b-214 | 3 | 50268874 | 50277139 | + | lnc_RNA | retained_intron |
| -96906 | enst00000618865 | sg00000012171 | sema3b-213 | 3 | 50267608 | 50277139 | + | mRNA | protein_coding |
| -96956 | enst00000621029 | sg00000012171 | sema3b-215 | 3 | 50267558 | 50271458 | + | mRNA | protein_coding |
| -97143 | enst00000421735 | sg00000232352 | sema3b-as1-201 | 3 | 50266641 | 50267371 | - | lnc_RNA | lncrna |
| -103281 | enst00000426302 | sg00000230454 | u73166.1-203 | 3 | 50261233 | 50263312 | + | lnc_RNA | lncrna |
| -104100 | enst00000453717 | sg00000230454 | u73166.1-202 | 3 | 50260414 | 50261407 | + | lnc_RNA | lncrna |
| -104211 | enst00000439898 | sg00000230454 | u73166.1-201 | 3 | 50260303 | 50263358 | + | lnc_RNA | lncrna |
| -108231 | enst00000492383 | sg00000114353 | gnai2-212 | 3 | 50256283 | 50258166 | + | lnc_RNA | retained_intron |
| -111360 | enst00000468422 | sg00000114353 | gnai2-208 | 3 | 50253154 | 50256691 | + | lnc_RNA | retained_intron |
| -113105 | enst00000490122 | sg00000114353 | gnai2-210 | 3 | 50251409 | 50258893 | + | lnc_RNA | retained_intron |
| -117620 | enst00000451956 | sg00000114353 | gnai2-207 | 3 | 50246894 | 50258697 | + | mRNA | protein_coding |
| -124896 | enst00000395152 | sg00000213600 | u73169.1-201 | 3 | 50239618 | 50239984 | + | lnc_RNA | lncrna |
| -126402 | enst00000440628 | sg00000114353 | gnai2-204 | 3 | 50238112 | 50258751 | + | mRNA | protein_coding |
| -128310 | enst00000313601 | sg00000114353 | gnai2-202 | 3 | 50236204 | 50259362 | + | mRNA | protein_coding |
| -128310 | enst00000441156 | sg00000114353 | gnai2-205 | 3 | 50236204 | 50259354 | + | mRNA | nonsense_mediated_decay |
| -133704 | enst00000480090 | sg00000114353 | gnai2-209 | 3 | 50230810 | 50235290 | + | lnc_RNA | processed_transcript |
| -133738 | enst00000266027 | sg00000114353 | gnai2-201 | 3 | 50230776 | 50259339 | + | mRNA | protein_coding |
| -135449 | enst00000491100 | sg00000114353 | gnai2-211 | 3 | 50229065 | 50259345 | + | lnc_RNA | processed_transcript |
| -137078 | enst00000611784 | sg00000275334 | mir5787-201 | 3 | 50227436 | 50227490 | + | miRNA | mirna |
| 137775 | enst00000423994 | sg00000007402 | cacna2d2-203 | 3 | 50362799 | 50503423 | - | mRNA | protein_coding |
| 137775 | enst00000424201 | sg00000007402 | cacna2d2-204 | 3 | 50362892 | 50503423 | - | mRNA | protein_coding |
| 137775 | enst00000479441 | sg00000007402 | cacna2d2-206 | 3 | 50364666 | 50503423 | - | mRNA | protein_coding |
| -137777 | enst00000446079 | sg00000114353 | gnai2-206 | 3 | 50226737 | 50258898 | + | mRNA | nonsense_mediated_decay |
| 137780 | enst00000429770 | sg00000007402 | cacna2d2-205 | 3 | 50362802 | 50503428 | - | mRNA | protein_coding |
| 137949 | enst00000266039 | sg00000007402 | cacna2d2-201 | 3 | 50362802 | 50503597 | - | mRNA | protein_coding |
| 137986 | enst00000487413 | sg00000007402 | cacna2d2-208 | 3 | 50415803 | 50503634 | - | lnc_RNA | processed_transcript |
| -138222 | enst00000422163 | sg00000114353 | gnai2-203 | 3 | 50226292 | 50258898 | + | mRNA | protein_coding |
| 138596 | enst00000360963 | sg00000007402 | cacna2d2-202 | 3 | 50362802 | 50504244 | - | mRNA | protein_coding |
| -146597 | enst00000417121 | sg00000188338 | slc38a3-201 | 3 | 50217917 | 50218680 | + | lnc_RNA | retained_intron |
| -146778 | enst00000417851 | sg00000188338 | slc38a3-202 | 3 | 50217736 | 50218668 | + | lnc_RNA | retained_intron |
| -149247 | enst00000439524 | sg00000188338 | slc38a3-203 | 3 | 50215267 | 50217293 | + | lnc_RNA | retained_intron |
| -156831 | enst00000621456 | sg00000188338 | slc38a3-208 | 3 | 50207683 | 50214768 | + | mRNA | protein_coding |
| -159228 | enst00000445096 | sg00000188338 | slc38a3-204 | 3 | 50205286 | 50218672 | + | mRNA | protein_coding |
| -159235 | enst00000620404 | sg00000188338 | slc38a3-207 | 3 | 50205279 | 50214914 | + | lnc_RNA | retained_intron |
| -159243 | enst00000614032 | sg00000188338 | slc38a3-206 | 3 | 50205271 | 50221486 | + | mRNA | protein_coding |
| -159246 | enst00000621714 | sg00000188338 | slc38a3-209 | 3 | 50205268 | 50217995 | + | mRNA | nonsense_mediated_decay |
| -159268 | enst00000610458 | sg00000188338 | slc38a3-205 | 3 | 50205246 | 50214757 | + | mRNA | protein_coding |
| -170942 | enst00000481246 | sg00000114349 | gnat1-205 | 3 | 50193572 | 50194182 | + | lnc_RNA | processed_transcript |
| -171816 | enst00000467787 | sg00000114349 | gnat1-204 | 3 | 50192698 | 50193173 | + | lnc_RNA | retained_intron |
| -171842 | enst00000440836 | sg00000114349 | gnat1-203 | 3 | 50192672 | 50193837 | + | mRNA | protein_coding |
| -172844 | enst00000433068 | sg00000114349 | gnat1-202 | 3 | 50191670 | 50196515 | + | mRNA | protein_coding |
| -172904 | enst00000232461 | sg00000114349 | gnat1-201 | 3 | 50191610 | 50197696 | + | mRNA | protein_coding |
| -180242 | enst00000470737 | sg00000001617 | sema3f-208 | 3 | 50184272 | 50185465 | + | lnc_RNA | retained_intron |
| -181876 | enst00000493743 | sg00000001617 | sema3f-209 | 3 | 50182638 | 50183608 | + | lnc_RNA | retained_intron |
| -190707 | enst00000420831 | sg00000001617 | sema3f-204 | 3 | 50173807 | 50176861 | + | mRNA | protein_coding |
| -191188 | enst00000385187 | sg00000207922 | ac104450.1-201 | 3 | 50173326 | 50173419 | + | miRNA | mirna |
| 196263 | enst00000422619 | sg00000088543 | c3orf18-202 | 3 | 50559525 | 50561911 | - | mRNA | protein_coding |
| 201973 | enst00000486175 | sg00000088543 | c3orf18-210 | 3 | 50559283 | 50567621 | - | lnc_RNA | processed_transcript |
| 201977 | enst00000484982 | sg00000088543 | c3orf18-208 | 3 | 50559599 | 50567625 | - | lnc_RNA | processed_transcript |
| 201994 | enst00000485902 | sg00000088543 | c3orf18-209 | 3 | 50559280 | 50567642 | - | lnc_RNA | processed_transcript |
| 202017 | enst00000426034 | sg00000088543 | c3orf18-203 | 3 | 50558025 | 50567665 | - | mRNA | protein_coding |
| 202028 | enst00000441239 | sg00000088543 | c3orf18-205 | 3 | 50558811 | 50567676 | - | mRNA | protein_coding |
| 202028 | enst00000491269 | sg00000088543 | c3orf18-211 | 3 | 50565384 | 50567676 | - | lnc_RNA | processed_transcript |
| 202032 | enst00000430746 | sg00000088543 | c3orf18-204 | 3 | 50559222 | 50567680 | - | mRNA | nonsense_mediated_decay |
| 202099 | enst00000357203 | sg00000088543 | c3orf18-201 | 3 | 50558025 | 50567747 | - | mRNA | protein_coding |
| 203504 | enst00000434410 | sg00000114735 | hemk1-203 | 3 | 50569152 | 50596168 | + | mRNA | protein_coding |
| 203549 | enst00000232854 | sg00000114735 | hemk1-201 | 3 | 50569197 | 50584935 | + | mRNA | protein_coding |
| 203830 | enst00000448997 | sg00000114735 | hemk1-205 | 3 | 50569478 | 50584748 | + | mRNA | nonsense_mediated_decay |
| 203845 | enst00000455834 | sg00000114735 | hemk1-206 | 3 | 50569493 | 50580672 | + | mRNA | protein_coding |
| 203919 | enst00000482974 | sg00000114735 | hemk1-207 | 3 | 50569567 | 50580673 | + | lnc_RNA | retained_intron |
| 203922 | enst00000424388 | sg00000114735 | hemk1-202 | 3 | 50569570 | 50577132 | + | mRNA | nonsense_mediated_decay |
| 205343 | enst00000449241 | sg00000088543 | c3orf18-206 | 3 | 50558032 | 50570991 | - | mRNA | protein_coding |
| 205379 | enst00000464080 | sg00000088543 | c3orf18-207 | 3 | 50559454 | 50571027 | - | lnc_RNA | processed_transcript |
| -205495 | enst00000434342 | sg00000001617 | sema3f-206 | 3 | 50159019 | 50189073 | + | mRNA | protein_coding |
| -208429 | enst00000437204 | sg00000235016 | sema3f-as1-202 | 3 | 50116022 | 50156085 | - | lnc_RNA | lncrna |
| -208494 | enst00000425674 | sg00000235016 | sema3f-as1-201 | 3 | 50118165 | 50156020 | - | lnc_RNA | lncrna |
| -209103 | enst00000426511 | sg00000001617 | sema3f-205 | 3 | 50155411 | 50173956 | + | mRNA | protein_coding |
| -209190 | enst00000002829 | sg00000001617 | sema3f-201 | 3 | 50155324 | 50189075 | + | mRNA | protein_coding |
| -209423 | enst00000413852 | sg00000001617 | sema3f-202 | 3 | 50155091 | 50189074 | + | mRNA | protein_coding |
| -209455 | enst00000450338 | sg00000001617 | sema3f-207 | 3 | 50155059 | 50183563 | + | mRNA | protein_coding |
| -209469 | enst00000414301 | sg00000001617 | sema3f-203 | 3 | 50155045 | 50182766 | + | mRNA | protein_coding |
| 211476 | enst00000443894 | sg00000114735 | hemk1-204 | 3 | 50577124 | 50580676 | + | mRNA | protein_coding |
| 235500 | enst00000624711 | sg00000280382 | ac096920.1-201 | 3 | 50599879 | 50601148 | - | lnc_RNA | lncrna |
| 245872 | enst00000486712 | sg00000114738 | mapkapk3-206 | 3 | 50611520 | 50613900 | + | lnc_RNA | processed_transcript |
| 246113 | enst00000491847 | sg00000114737 | cish-203 | 3 | 50606490 | 50611761 | - | lnc_RNA | retained_intron |
| 246124 | enst00000443053 | sg00000114737 | cish-202 | 3 | 50606496 | 50611772 | - | mRNA | protein_coding |
| 246183 | enst00000348721 | sg00000114737 | cish-201 | 3 | 50606522 | 50611831 | - | mRNA | protein_coding |
| 246260 | enst00000446044 | sg00000114738 | mapkapk3-203 | 3 | 50611908 | 50649289 | + | mRNA | protein_coding |
| 246680 | enst00000497283 | sg00000114738 | mapkapk3-207 | 3 | 50612328 | 50614117 | + | lnc_RNA | processed_transcript |
| -247969 | enst00000461242 | sg00000003756 | rbm5-210 | 3 | 50116545 | 50117175 | + | lnc_RNA | retained_intron |
| -249162 | enst00000464988 | sg00000003756 | rbm5-213 | 3 | 50115352 | 50118570 | + | lnc_RNA | retained_intron |
| -250263 | enst00000479275 | sg00000003756 | rbm5-220 | 3 | 50114251 | 50116231 | + | lnc_RNA | retained_intron |
| -250467 | enst00000492430 | sg00000003756 | rbm5-222 | 3 | 50114047 | 50116180 | + | lnc_RNA | retained_intron |
| -250485 | enst00000475590 | sg00000003756 | rbm5-219 | 3 | 50114029 | 50117379 | + | lnc_RNA | retained_intron |
| -251152 | enst00000493993 | sg00000003756 | rbm5-224 | 3 | 50113362 | 50114242 | + | lnc_RNA | retained_intron |
| 251483 | enst00000430409 | sg00000114738 | mapkapk3-202 | 3 | 50617131 | 50647204 | + | mRNA | protein_coding |
| 251503 | enst00000621469 | sg00000114738 | mapkapk3-208 | 3 | 50617151 | 50649291 | + | mRNA | protein_coding |
| 251522 | enst00000357955 | sg00000114738 | mapkapk3-201 | 3 | 50617170 | 50649288 | + | mRNA | protein_coding |
| 251742 | enst00000457064 | sg00000114738 | mapkapk3-205 | 3 | 50617390 | 50640505 | + | mRNA | protein_coding |
| -251900 | enst00000475128 | sg00000003756 | rbm5-218 | 3 | 50112614 | 50115943 | + | lnc_RNA | retained_intron |
| -252450 | enst00000474470 | sg00000003756 | rbm5-216 | 3 | 50112064 | 50113492 | + | lnc_RNA | processed_transcript |
| -257033 | enst00000489437 | sg00000003756 | rbm5-221 | 3 | 50107481 | 50110892 | + | lnc_RNA | retained_intron |
| -257485 | enst00000441812 | sg00000003756 | rbm5-209 | 3 | 50107029 | 50113489 | + | lnc_RNA | processed_transcript |
| -257774 | enst00000494360 | sg00000003756 | rbm5-225 | 3 | 50106740 | 50109823 | + | lnc_RNA | retained_intron |
| -259540 | enst00000474818 | sg00000003756 | rbm5-217 | 3 | 50104974 | 50110757 | + | lnc_RNA | retained_intron |
| -259937 | enst00000471995 | sg00000003756 | rbm5-215 | 3 | 50104577 | 50106801 | + | lnc_RNA | retained_intron |
| -261788 | enst00000462025 | sg00000003756 | rbm5-211 | 3 | 50102726 | 50105614 | + | lnc_RNA | retained_intron |
| -262177 | enst00000496179 | sg00000003756 | rbm5-226 | 3 | 50102337 | 50108255 | + | lnc_RNA | retained_intron |
| -263526 | enst00000630404 | sg00000281691 | rbm5-as1-201 | 3 | 50099603 | 50100988 | - | lnc_RNA | lncrna |
| -270796 | enst00000395174 | sg00000003756 | rbm5-202 | 3 | 50093718 | 50108305 | + | mRNA | nonsense_mediated_decay |
| -274144 | enst00000417905 | sg00000003756 | rbm5-204 | 3 | 50090370 | 50100004 | + | mRNA | protein_coding |
| -274633 | enst00000437500 | sg00000003756 | rbm5-206 | 3 | 50089881 | 50093851 | + | mRNA | protein_coding |
| -275539 | enst00000492472 | sg00000003756 | rbm5-223 | 3 | 50088975 | 50094330 | + | lnc_RNA | retained_intron |
| -275551 | enst00000464087 | sg00000003756 | rbm5-212 | 3 | 50088963 | 50118957 | + | lnc_RNA | retained_intron |
| -275559 | enst00000438369 | sg00000003756 | rbm5-207 | 3 | 50088955 | 50100010 | + | mRNA | nonsense_mediated_decay |
| -275560 | enst00000441305 | sg00000003756 | rbm5-208 | 3 | 50088954 | 50100054 | + | mRNA | protein_coding |
| -275560 | enst00000433556 | sg00000003756 | rbm5-205 | 3 | 50088954 | 50100172 | + | lnc_RNA | retained_intron |
| -275595 | enst00000469838 | sg00000003756 | rbm5-214 | 3 | 50088919 | 50102194 | + | mRNA | protein_coding |
| -275595 | enst00000404526 | sg00000003756 | rbm5-203 | 3 | 50088919 | 50103107 | + | mRNA | protein_coding |
| -275595 | enst00000347869 | sg00000003756 | rbm5-201 | 3 | 50088919 | 50119021 | + | mRNA | protein_coding |
| 280564 | enst00000451680 | sg00000114738 | mapkapk3-204 | 3 | 50646212 | 50648627 | + | mRNA | protein_coding |
| -298122 | enst00000421682 | sg00000004534 | rbm6-203 | 3 | 50066392 | 50077249 | + | mRNA | protein_coding |
| 304341 | enst00000608605 | sg00000273356 | linc02019-201 | 3 | 50669989 | 50672048 | + | lnc_RNA | lncrna |
| -304816 | enst00000438912 | sg00000004534 | rbm6-208 | 3 | 50059698 | 50065061 | + | mRNA | protein_coding |
| 305044 | enst00000609204 | sg00000273356 | linc02019-202 | 3 | 50670692 | 50671730 | + | lnc_RNA | lncrna |
| -305171 | enst00000478026 | sg00000004534 | rbm6-216 | 3 | 50059343 | 50061172 | + | lnc_RNA | retained_intron |
| 309279 | enst00000266037 | sg00000088538 | dock3-201 | 3 | 50674927 | 51384198 | + | mRNA | protein_coding |
| 309432 | enst00000607364 | sg00000272543 | mir4787-201 | 3 | 50675080 | 50675163 | + | miRNA | mirna |
| -310498 | enst00000466247 | sg00000004534 | rbm6-215 | 3 | 50054016 | 50057847 | + | lnc_RNA | retained_intron |
| -317405 | enst00000446471 | sg00000004534 | rbm6-212 | 3 | 50047109 | 50058466 | + | mRNA | protein_coding |
| 320143 | enst00000423991 | sg00000228337 | ppiap69-201 | 3 | 50685551 | 50685791 | - | pseudogenic_transcript | processed_pseudogene |
| 354303 | enst00000431082 | sg00000213587 | ac126120.1-201 | 3 | 50719482 | 50719951 | - | pseudogenic_transcript | processed_pseudogene |
| -365062 | enst00000483350 | sg00000004534 | rbm6-217 | 3 | 49999452 | 50058915 | + | lnc_RNA | retained_intron |
| -382953 | enst00000464013 | sg00000004534 | rbm6-214 | 3 | 49981561 | 50057806 | + | lnc_RNA | processed_transcript |
| 422637 | enst00000442420 | sg00000235278 | znf652p1-201 | 3 | 50786674 | 50788285 | - | pseudogenic_transcript | processed_pseudogene |
| -423829 | enst00000488807 | sg00000004534 | rbm6-218 | 3 | 49940685 | 49967365 | + | lnc_RNA | processed_transcript |
| -423975 | enst00000491874 | sg00000004534 | rbm6-219 | 3 | 49940539 | 49967358 | + | lnc_RNA | processed_transcript |
| -424053 | enst00000433811 | sg00000004534 | rbm6-206 | 3 | 49940461 | 49967654 | + | mRNA | protein_coding |
| -424328 | enst00000434592 | sg00000004534 | rbm6-207 | 3 | 49940186 | 50100045 | + | mRNA | nonsense_mediated_decay |
| -424363 | enst00000425608 | sg00000004534 | rbm6-205 | 3 | 49940151 | 50057853 | + | mRNA | nonsense_mediated_decay |
| -424364 | enst00000266022 | sg00000004534 | rbm6-201 | 3 | 49940150 | 50077249 | + | mRNA | protein_coding |
| -424374 | enst00000454079 | sg00000004534 | rbm6-213 | 3 | 49940140 | 50077247 | + | mRNA | nonsense_mediated_decay |
| -424412 | enst00000422955 | sg00000004534 | rbm6-204 | 3 | 49940102 | 50077248 | + | mRNA | protein_coding |
| -424417 | enst00000493652 | sg00000004534 | rbm6-220 | 3 | 49940097 | 49963027 | + | lnc_RNA | retained_intron |
| -424440 | enst00000441115 | sg00000004534 | rbm6-209 | 3 | 49940074 | 50066442 | + | lnc_RNA | processed_transcript |
| -424451 | enst00000419610 | sg00000004534 | rbm6-202 | 3 | 49940063 | 50077248 | + | mRNA | nonsense_mediated_decay |
| -424473 | enst00000443081 | sg00000004534 | rbm6-211 | 3 | 49940041 | 50077248 | + | mRNA | protein_coding |
| -424507 | enst00000442092 | sg00000004534 | rbm6-210 | 3 | 49940007 | 50077249 | + | mRNA | protein_coding |
| -434341 | enst00000417270 | sg00000164077 | mon1a-202 | 3 | 49908873 | 49930173 | - | mRNA | protein_coding |
| -434369 | enst00000296473 | sg00000164077 | mon1a-201 | 3 | 49908862 | 49930145 | - | mRNA | protein_coding |
| -434625 | enst00000455683 | sg00000164077 | mon1a-203 | 3 | 49908873 | 49929889 | - | mRNA | protein_coding |
| -434625 | enst00000486107 | sg00000164077 | mon1a-206 | 3 | 49908875 | 49929889 | - | lnc_RNA | retained_intron |
| -434627 | enst00000473451 | sg00000164077 | mon1a-204 | 3 | 49912397 | 49929887 | - | lnc_RNA | retained_intron |
| -434680 | enst00000483022 | sg00000164077 | mon1a-205 | 3 | 49911621 | 49929834 | - | lnc_RNA | processed_transcript |
| -434909 | enst00000493206 | sg00000164077 | mon1a-207 | 3 | 49911766 | 49929605 | - | lnc_RNA | processed_transcript |
| -434973 | enst00000645862 | sg00000164077 | mon1a-209 | 3 | 49907160 | 49929541 | - | mRNA | protein_coding |
| -434988 | enst00000642691 | sg00000164077 | mon1a-208 | 3 | 49907160 | 49929526 | - | mRNA | protein_coding |
| -460527 | enst00000419183 | sg00000228008 | ac105935.1-203 | 3 | 49903987 | 49916937 | + | lnc_RNA | lncrna |
| -460632 | enst00000412015 | sg00000228008 | ac105935.1-202 | 3 | 49903882 | 49906240 | + | lnc_RNA | lncrna |
| -460641 | enst00000296474 | sg00000164078 | mst1r-201 | 3 | 49887002 | 49903873 | - | mRNA | protein_coding |
| -460641 | enst00000621387 | sg00000164078 | mst1r-215 | 3 | 49887007 | 49903873 | - | mRNA | protein_coding |
| -460648 | enst00000411578 | sg00000164078 | mst1r-203 | 3 | 49887005 | 49903866 | - | mRNA | nonsense_mediated_decay |
| -460669 | enst00000424174 | sg00000228008 | ac105935.1-201 | 3 | 49903845 | 49906237 | + | lnc_RNA | lncrna |
| -460905 | enst00000612032 | sg00000164078 | mst1r-213 | 3 | 49887007 | 49903609 | - | mRNA | protein_coding |
| -460905 | enst00000613534 | sg00000164078 | mst1r-214 | 3 | 49887007 | 49903609 | - | mRNA | protein_coding |
| -460905 | enst00000344206 | sg00000164078 | mst1r-202 | 3 | 49887165 | 49903609 | - | mRNA | protein_coding |
| -460905 | enst00000485044 | sg00000164078 | mst1r-209 | 3 | 49897987 | 49903609 | - | lnc_RNA | retained_intron |
| -460905 | enst00000468525 | sg00000164078 | mst1r-208 | 3 | 49896120 | 49903609 | - | lnc_RNA | retained_intron |
| -460905 | enst00000493535 | sg00000164078 | mst1r-211 | 3 | 49897987 | 49903609 | - | lnc_RNA | retained_intron |
| -460905 | enst00000497001 | sg00000164078 | mst1r-212 | 3 | 49899006 | 49903609 | - | lnc_RNA | retained_intron |
| -465212 | enst00000435478 | sg00000230698 | ac105935.2-201 | 3 | 49899302 | 49903757 | + | lnc_RNA | lncrna |
| -468376 | enst00000467110 | sg00000164078 | mst1r-207 | 3 | 49895431 | 49896138 | - | lnc_RNA | retained_intron |
| -468441 | enst00000440292 | sg00000164078 | mst1r-205 | 3 | 49890547 | 49896073 | - | mRNA | protein_coding |
| -468698 | enst00000434765 | sg00000164078 | mst1r-204 | 3 | 49889950 | 49895816 | - | mRNA | protein_coding |
| -469075 | enst00000490053 | sg00000164078 | mst1r-210 | 3 | 49891771 | 49895439 | - | lnc_RNA | retained_intron |
| -472572 | enst00000463789 | sg00000164078 | mst1r-206 | 3 | 49890570 | 49891942 | - | lnc_RNA | retained_intron |
| -487209 | enst00000423971 | sg00000234667 | actbp13-201 | 3 | 49873347 | 49877305 | - | pseudogenic_transcript | unitary_pseudogene |
| -494579 | enst00000480398 | sg00000164076 | camkv-212 | 3 | 49860943 | 49869935 | - | mRNA | protein_coding |
| -494583 | enst00000463537 | sg00000164076 | camkv-202 | 3 | 49857989 | 49869931 | - | mRNA | protein_coding |
| -494605 | enst00000466940 | sg00000164076 | camkv-204 | 3 | 49859293 | 49869909 | - | mRNA | protein_coding |
| -494608 | enst00000477224 | sg00000164076 | camkv-209 | 3 | 49857989 | 49869906 | - | mRNA | protein_coding |
| -494608 | enst00000467248 | sg00000164076 | camkv-205 | 3 | 49859261 | 49869906 | - | mRNA | protein_coding |
| -494608 | enst00000488336 | sg00000164076 | camkv-215 | 3 | 49857989 | 49869906 | - | mRNA | protein_coding |
| -494609 | enst00000296471 | sg00000164076 | camkv-201 | 3 | 49857989 | 49869905 | - | mRNA | protein_coding |
| -494609 | enst00000479704 | sg00000164076 | camkv-211 | 3 | 49861130 | 49869905 | - | lnc_RNA | retained_intron |
| -494609 | enst00000466535 | sg00000164076 | camkv-203 | 3 | 49860200 | 49869905 | - | mRNA | nonsense_mediated_decay |
| -494609 | enst00000498324 | sg00000164076 | camkv-216 | 3 | 49861464 | 49869905 | - | lnc_RNA | processed_transcript |
| -494609 | enst00000476105 | sg00000164076 | camkv-208 | 3 | 49861789 | 49869905 | - | lnc_RNA | retained_intron |
| -494611 | enst00000487726 | sg00000164076 | camkv-214 | 3 | 49859261 | 49869903 | - | mRNA | nonsense_mediated_decay |
| -494611 | enst00000475665 | sg00000164076 | camkv-207 | 3 | 49857988 | 49869903 | - | lnc_RNA | retained_intron |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc