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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #190 | 16 | 31475670 | 31477781 | 2111 | 3 | 71 | 2.30074e-14 | 1.20426e-12 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -2230 | enst00000564804 | sg00000140682 | tgfb1i1-209 | 16 | 31473440 | 31477906 | + | mRNA | nonsense_mediated_decay |
| -2236 | enst00000568142 | sg00000140682 | tgfb1i1-215 | 16 | 31473434 | 31476802 | + | lnc_RNA | retained_intron |
| -2244 | enst00000567607 | sg00000140682 | tgfb1i1-214 | 16 | 31473426 | 31477958 | + | mRNA | protein_coding |
| -2465 | enst00000394858 | sg00000140682 | tgfb1i1-202 | 16 | 31473205 | 31477960 | + | mRNA | protein_coding |
| -2590 | enst00000562566 | sg00000140682 | tgfb1i1-206 | 16 | 31473080 | 31473972 | + | mRNA | protein_coding |
| -3462 | enst00000361773 | sg00000140682 | tgfb1i1-201 | 16 | 31472208 | 31477960 | + | mRNA | protein_coding |
| -3495 | enst00000569703 | sg00000140682 | tgfb1i1-217 | 16 | 31472175 | 31476288 | + | lnc_RNA | retained_intron |
| -3499 | enst00000562165 | sg00000140682 | tgfb1i1-205 | 16 | 31472171 | 31474100 | + | lnc_RNA | retained_intron |
| -3499 | enst00000564176 | sg00000140682 | tgfb1i1-208 | 16 | 31472171 | 31477958 | + | lnc_RNA | retained_intron |
| -3502 | enst00000565360 | sg00000140682 | tgfb1i1-210 | 16 | 31472168 | 31474759 | + | mRNA | protein_coding |
| -3513 | enst00000569254 | sg00000140682 | tgfb1i1-216 | 16 | 31472157 | 31474239 | + | lnc_RNA | retained_intron |
| -3515 | enst00000561785 | sg00000140682 | tgfb1i1-204 | 16 | 31472155 | 31474095 | + | lnc_RNA | retained_intron |
| -3516 | enst00000563712 | sg00000140682 | tgfb1i1-207 | 16 | 31472154 | 31477600 | + | mRNA | nonsense_mediated_decay |
| -3518 | enst00000394863 | sg00000140682 | tgfb1i1-203 | 16 | 31472152 | 31477958 | + | mRNA | protein_coding |
| -3529 | enst00000567524 | sg00000140682 | tgfb1i1-213 | 16 | 31472141 | 31473939 | + | lnc_RNA | retained_intron |
| -3562 | enst00000622954 | sg00000280132 | ac026471.6-201 | 16 | 31470204 | 31472108 | - | unconfirmed_transcript | tec |
| -3640 | enst00000567066 | sg00000140682 | tgfb1i1-212 | 16 | 31472030 | 31477600 | + | mRNA | nonsense_mediated_decay |
| -4085 | enst00000565454 | sg00000140682 | tgfb1i1-211 | 16 | 31471585 | 31474590 | + | mRNA | protein_coding |
| 5221 | enst00000569576 | sg00000140675 | slc5a2-209 | 16 | 31483002 | 31486276 | + | mRNA | protein_coding |
| 5337 | enst00000419665 | sg00000140675 | slc5a2-202 | 16 | 31483118 | 31490669 | + | mRNA | nonsense_mediated_decay |
| 5342 | enst00000330498 | sg00000140675 | slc5a2-201 | 16 | 31483123 | 31490769 | + | mRNA | protein_coding |
| 5357 | enst00000562006 | sg00000140675 | slc5a2-203 | 16 | 31483138 | 31485616 | + | lnc_RNA | retained_intron |
| 6966 | enst00000565446 | sg00000140675 | slc5a2-205 | 16 | 31484747 | 31486276 | + | lnc_RNA | retained_intron |
| 10239 | enst00000568188 | sg00000140675 | slc5a2-207 | 16 | 31488020 | 31490769 | + | lnc_RNA | retained_intron |
| -10337 | enst00000570119 | sg00000140691 | armc5-208 | 16 | 31465333 | 31466151 | + | lnc_RNA | retained_intron |
| 10429 | enst00000568891 | sg00000140675 | slc5a2-208 | 16 | 31488210 | 31490344 | + | lnc_RNA | retained_intron |
| 10711 | enst00000565137 | sg00000260740 | ac026471.3-201 | 16 | 31487370 | 31488492 | - | lnc_RNA | lncrna |
| 11708 | enst00000567051 | sg00000140675 | slc5a2-206 | 16 | 31489489 | 31490845 | + | lnc_RNA | processed_transcript |
| 11708 | enst00000564197 | sg00000140675 | slc5a2-204 | 16 | 31489489 | 31490860 | + | lnc_RNA | processed_transcript |
| -15676 | enst00000564514 | sg00000140691 | armc5-206 | 16 | 31459994 | 31462323 | + | mRNA | nonsense_mediated_decay |
| -15709 | enst00000564900 | sg00000140691 | armc5-207 | 16 | 31459961 | 31467165 | + | mRNA | protein_coding |
| -15934 | enst00000564629 | sg00000260267 | ac026471.1-201 | 16 | 31456711 | 31459736 | - | lnc_RNA | lncrna |
| 15957 | enst00000568491 | sg00000140688 | c16orf58-210 | 16 | 31489494 | 31493738 | - | lnc_RNA | retained_intron |
| -16169 | enst00000268314 | sg00000140691 | armc5-201 | 16 | 31459501 | 31467165 | + | mRNA | protein_coding |
| -16583 | enst00000538189 | sg00000140691 | armc5-204 | 16 | 31459087 | 31467164 | + | mRNA | protein_coding |
| -16818 | enst00000563544 | sg00000140691 | armc5-205 | 16 | 31458852 | 31467084 | + | mRNA | protein_coding |
| -16846 | enst00000457010 | sg00000140691 | armc5-203 | 16 | 31458824 | 31467166 | + | mRNA | protein_coding |
| -17590 | enst00000408912 | sg00000140691 | armc5-202 | 16 | 31458080 | 31467105 | + | mRNA | protein_coding |
| 19171 | enst00000567673 | sg00000140688 | c16orf58-208 | 16 | 31493197 | 31496952 | - | lnc_RNA | retained_intron |
| -22177 | enst00000569291 | sg00000261474 | ac026471.4-201 | 16 | 31449535 | 31453493 | - | lnc_RNA | lncrna |
| 30373 | enst00000566148 | sg00000140688 | c16orf58-206 | 16 | 31499242 | 31508154 | - | lnc_RNA | retained_intron |
| 30598 | enst00000430477 | sg00000140688 | c16orf58-202 | 16 | 31489498 | 31508379 | - | mRNA | protein_coding |
| 30603 | enst00000541442 | sg00000140688 | c16orf58-203 | 16 | 31493455 | 31508384 | - | lnc_RNA | retained_intron |
| 30603 | enst00000567994 | sg00000140688 | c16orf58-209 | 16 | 31490273 | 31508384 | - | mRNA | protein_coding |
| 30603 | enst00000567578 | sg00000140688 | c16orf58-207 | 16 | 31493899 | 31508384 | - | mRNA | nonsense_mediated_decay |
| 30605 | enst00000565128 | sg00000140688 | c16orf58-205 | 16 | 31493736 | 31508386 | - | mRNA | nonsense_mediated_decay |
| 30610 | enst00000570164 | sg00000140688 | c16orf58-211 | 16 | 31489471 | 31508391 | - | mRNA | protein_coding |
| 30610 | enst00000327237 | sg00000140688 | c16orf58-201 | 16 | 31489475 | 31508391 | - | mRNA | protein_coding |
| 30683 | enst00000651898 | sg00000260625 | ac026471.2-201 | 16 | 31508464 | 31509560 | + | lnc_RNA | lncrna |
| 30690 | enst00000569782 | sg00000260625 | ac026471.2-202 | 16 | 31508471 | 31509256 | + | lnc_RNA | lncrna |
| 31528 | enst00000564807 | sg00000140688 | c16orf58-204 | 16 | 31496879 | 31509309 | - | mRNA | protein_coding |
| -32510 | enst00000618063 | sg00000176723 | znf843-203 | 16 | 31435438 | 31443160 | - | mRNA | protein_coding |
| -32645 | enst00000564218 | sg00000176723 | znf843-202 | 16 | 31432593 | 31443025 | - | mRNA | protein_coding |
| -32881 | enst00000315678 | sg00000176723 | znf843-201 | 16 | 31435434 | 31442789 | - | mRNA | protein_coding |
| -47310 | enst00000287490 | sg00000156885 | cox6a2-201 | 16 | 31427731 | 31428360 | - | mRNA | protein_coding |
| -47385 | enst00000565462 | sg00000156885 | cox6a2-202 | 16 | 31427776 | 31428285 | - | lnc_RNA | retained_intron |
| -47490 | enst00000615068 | sg00000277543 | ac026471.5-201 | 16 | 31428180 | 31428646 | + | lnc_RNA | lncrna |
| 50119 | enst00000302312 | sg00000169877 | ahsp-201 | 16 | 31527900 | 31528803 | + | mRNA | protein_coding |
| 50133 | enst00000569954 | sg00000169877 | ahsp-203 | 16 | 31527914 | 31528803 | + | lnc_RNA | processed_transcript |
| 50196 | enst00000564707 | sg00000169877 | ahsp-202 | 16 | 31527977 | 31528553 | + | mRNA | protein_coding |
| -51728 | enst00000567308 | sg00000156886 | itgad-203 | 16 | 31423942 | 31424715 | + | lnc_RNA | retained_intron |
| 69024 | enst00000424940 | sg00000213547 | vn1r64p-201 | 16 | 31546805 | 31547737 | + | pseudogenic_transcript | unitary_pseudogene |
| 69456 | enst00000566641 | sg00000261648 | ac106730.1-201 | 16 | 31546698 | 31547237 | - | lnc_RNA | lncrna |
| -73105 | enst00000567545 | sg00000260757 | ac093520.1-201 | 16 | 31402565 | 31404699 | + | lnc_RNA | lncrna |
| 75769 | enst00000662819 | sg00000261475 | linc02190-204 | 16 | 31542751 | 31553550 | - | lnc_RNA | lncrna |
| 75786 | enst00000567765 | sg00000261475 | linc02190-201 | 16 | 31549143 | 31553567 | - | lnc_RNA | lncrna |
| 75808 | enst00000659783 | sg00000261475 | linc02190-203 | 16 | 31542748 | 31553589 | - | lnc_RNA | lncrna |
| 75823 | enst00000655928 | sg00000261475 | linc02190-202 | 16 | 31548206 | 31553604 | - | lnc_RNA | lncrna |
| 76324 | enst00000566443 | sg00000260883 | vn1r65p-201 | 16 | 31554105 | 31554912 | + | pseudogenic_transcript | unitary_pseudogene |
| -82335 | enst00000444228 | sg00000156886 | itgad-202 | 16 | 31393335 | 31408619 | + | lnc_RNA | retained_intron |
| -82335 | enst00000389202 | sg00000156886 | itgad-201 | 16 | 31393335 | 31426505 | + | mRNA | protein_coding |
| 87002 | enst00000568403 | sg00000261741 | frg2kp-202 | 16 | 31563082 | 31564783 | - | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 89219 | enst00000624568 | sg00000278885 | ac106730.2-201 | 16 | 31566360 | 31567000 | - | unconfirmed_transcript | tec |
| 89935 | enst00000565692 | sg00000261741 | frg2kp-201 | 16 | 31563185 | 31567716 | - | lnc_RNA | processed_transcript |
| 91694 | enst00000566722 | sg00000261614 | ybx3p1-201 | 16 | 31568386 | 31569475 | - | pseudogenic_transcript | processed_pseudogene |
| -104196 | enst00000562138 | sg00000140678 | itgax-202 | 16 | 31371474 | 31372654 | + | lnc_RNA | retained_intron |
| -113975 | enst00000561830 | sg00000261245 | ac093520.2-201 | 16 | 31361278 | 31361695 | - | pseudogenic_transcript | unprocessed_pseudogene |
| -115733 | enst00000571644 | sg00000140678 | itgax-207 | 16 | 31359937 | 31382932 | + | lnc_RNA | retained_intron |
| -120448 | enst00000562522 | sg00000140678 | itgax-203 | 16 | 31355222 | 31382943 | + | mRNA | protein_coding |
| -120482 | enst00000567409 | sg00000140678 | itgax-206 | 16 | 31355188 | 31357862 | + | lnc_RNA | retained_intron |
| -120496 | enst00000562918 | sg00000140678 | itgax-204 | 16 | 31355174 | 31358455 | + | mRNA | protein_coding |
| -120536 | enst00000564308 | sg00000140678 | itgax-205 | 16 | 31355134 | 31356278 | + | lnc_RNA | retained_intron |
| -120536 | enst00000268296 | sg00000140678 | itgax-201 | 16 | 31355134 | 31382997 | + | mRNA | protein_coding |
| 125750 | enst00000562403 | sg00000260010 | znf720p1-201 | 16 | 31601593 | 31603531 | - | pseudogenic_transcript | processed_pseudogene |
| -145290 | enst00000565142 | sg00000169896 | itgam-203 | 16 | 31330380 | 31331536 | + | mRNA | protein_coding |
| -146668 | enst00000569746 | sg00000169896 | itgam-206 | 16 | 31329002 | 31330052 | + | lnc_RNA | retained_intron |
| -147633 | enst00000567178 | sg00000169896 | itgam-205 | 16 | 31328037 | 31329905 | + | lnc_RNA | retained_intron |
| -150992 | enst00000561838 | sg00000169896 | itgam-202 | 16 | 31324678 | 31326968 | + | lnc_RNA | retained_intron |
| 170526 | enst00000412929 | sg00000237185 | vn1r66p-201 | 16 | 31648307 | 31649222 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -200078 | enst00000567031 | sg00000169896 | itgam-204 | 16 | 31275592 | 31324439 | + | mRNA | protein_coding |
| 203066 | enst00000567098 | sg00000260631 | rbm22p12-201 | 16 | 31680847 | 31682101 | + | pseudogenic_transcript | processed_pseudogene |
| -203785 | enst00000570242 | sg00000169896 | itgam-207 | 16 | 31271885 | 31273684 | + | lnc_RNA | retained_intron |
| -215695 | enst00000544665 | sg00000169896 | itgam-201 | 16 | 31259975 | 31332877 | + | mRNA | protein_coding |
| -215703 | enst00000648685 | sg00000169896 | itgam-208 | 16 | 31259967 | 31332892 | + | mRNA | protein_coding |
| 219826 | enst00000563247 | sg00000260472 | ac074050.1-201 | 16 | 31697397 | 31697607 | - | pseudogenic_transcript | processed_pseudogene |
| 222684 | enst00000563338 | sg00000260568 | ac074050.2-201 | 16 | 31699676 | 31700465 | - | lnc_RNA | lncrna |
| 222809 | enst00000254109 | sg00000131797 | cluhp3-201 | 16 | 31700590 | 31707437 | + | lnc_RNA | processed_transcript |
| 222814 | enst00000525610 | sg00000131797 | cluhp3-204 | 16 | 31700595 | 31707422 | + | lnc_RNA | processed_transcript |
| 222854 | enst00000532304 | sg00000131797 | cluhp3-205 | 16 | 31700635 | 31707437 | + | lnc_RNA | processed_transcript |
| 225387 | enst00000563678 | sg00000131797 | cluhp3-207 | 16 | 31703168 | 31708581 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| 226499 | enst00000411844 | sg00000131797 | cluhp3-202 | 16 | 31704280 | 31706018 | + | lnc_RNA | retained_intron |
| 226947 | enst00000614576 | sg00000276867 | ac074050.4-201 | 16 | 31704728 | 31705260 | + | lnc_RNA | lncrna |
| 227889 | enst00000431761 | sg00000131797 | cluhp3-203 | 16 | 31705670 | 31707351 | + | lnc_RNA | processed_transcript |
| 229182 | enst00000562354 | sg00000131797 | cluhp3-206 | 16 | 31706963 | 31711986 | + | lnc_RNA | processed_transcript |
| 234203 | enst00000569175 | sg00000261731 | ac074050.3-201 | 16 | 31709113 | 31711984 | - | lnc_RNA | lncrna |
| 235448 | enst00000529943 | sg00000197302 | znf720-205 | 16 | 31713229 | 31754536 | + | mRNA | nonsense_mediated_decay |
| 235451 | enst00000539915 | sg00000197302 | znf720-211 | 16 | 31713232 | 31759841 | + | mRNA | protein_coding |
| 235453 | enst00000316491 | sg00000197302 | znf720-201 | 16 | 31713234 | 31761565 | + | mRNA | protein_coding |
| 235464 | enst00000534277 | sg00000197302 | znf720-209 | 16 | 31713245 | 31759886 | + | mRNA | nonsense_mediated_decay |
| 235466 | enst00000531864 | sg00000197302 | znf720-207 | 16 | 31713247 | 31794869 | + | lnc_RNA | processed_transcript |
| 235488 | enst00000398707 | sg00000197302 | znf720-203 | 16 | 31713269 | 31756094 | + | mRNA | nonsense_mediated_decay |
| 235492 | enst00000533488 | sg00000197302 | znf720-208 | 16 | 31713273 | 31754795 | + | lnc_RNA | processed_transcript |
| 235492 | enst00000398696 | sg00000197302 | znf720-202 | 16 | 31713273 | 31754928 | + | mRNA | protein_coding |
| 235496 | enst00000534369 | sg00000197302 | znf720-210 | 16 | 31713277 | 31794155 | + | mRNA | protein_coding |
| 235506 | enst00000542684 | sg00000197302 | znf720-212 | 16 | 31713287 | 31759553 | + | lnc_RNA | processed_transcript |
| 235512 | enst00000544044 | sg00000197302 | znf720-213 | 16 | 31713293 | 31793707 | + | lnc_RNA | processed_transcript |
| 235522 | enst00000530881 | sg00000197302 | znf720-206 | 16 | 31713303 | 31753856 | + | mRNA | protein_coding |
| 235525 | enst00000529515 | sg00000197302 | znf720-204 | 16 | 31713306 | 31754484 | + | mRNA | protein_coding |
| -258311 | enst00000302964 | sg00000169900 | pydc1-201 | 16 | 31215962 | 31217359 | - | mRNA | protein_coding |
| -259300 | enst00000568383 | sg00000169900 | pydc1-202 | 16 | 31215962 | 31216370 | - | lnc_RNA | processed_transcript |
| -261551 | enst00000322122 | sg00000177238 | trim72-201 | 16 | 31214119 | 31231537 | + | mRNA | protein_coding |
| -261579 | enst00000613872 | sg00000177238 | trim72-202 | 16 | 31214091 | 31226427 | + | mRNA | protein_coding |
| -272220 | enst00000561508 | sg00000103490 | pycard-203 | 16 | 31202194 | 31203450 | - | mRNA | protein_coding |
| -272910 | enst00000247470 | sg00000103490 | pycard-201 | 16 | 31201486 | 31202760 | - | mRNA | protein_coding |
| -272914 | enst00000350605 | sg00000103490 | pycard-202 | 16 | 31201486 | 31202756 | - | mRNA | protein_coding |
| -273230 | enst00000565022 | sg00000103490 | pycard-204 | 16 | 31201486 | 31202440 | - | lnc_RNA | retained_intron |
| -273785 | enst00000561916 | sg00000261359 | pycard-as1-201 | 16 | 31201885 | 31203452 | + | lnc_RNA | lncrna |
| -279539 | enst00000565152 | sg00000260060 | ac009088.1-201 | 16 | 31196131 | 31196963 | + | lnc_RNA | lncrna |
| -285297 | enst00000483853 | sg00000089280 | fus-204 | 16 | 31190373 | 31191558 | + | lnc_RNA | retained_intron |
| -285454 | enst00000569760 | sg00000089280 | fus-212 | 16 | 31190216 | 31191605 | + | lnc_RNA | retained_intron |
| -287203 | enst00000564766 | sg00000089280 | fus-208 | 16 | 31188467 | 31189695 | + | lnc_RNA | retained_intron |
| -287518 | enst00000568901 | sg00000089280 | fus-211 | 16 | 31188152 | 31190120 | + | lnc_RNA | retained_intron |
| -290171 | enst00000474990 | sg00000089280 | fus-203 | 16 | 31185499 | 31191102 | + | lnc_RNA | processed_transcript |
| -290590 | enst00000570090 | sg00000089280 | fus-213 | 16 | 31185080 | 31187245 | + | lnc_RNA | retained_intron |
| -292120 | enst00000487974 | sg00000089280 | fus-207 | 16 | 31183550 | 31184398 | + | lnc_RNA | retained_intron |
| -292385 | enst00000564743 | sg00000260304 | ac009088.2-201 | 16 | 31182511 | 31183285 | - | lnc_RNA | lncrna |
| -295519 | enst00000568685 | sg00000089280 | fus-210 | 16 | 31180151 | 31191575 | + | mRNA | protein_coding |
| -295520 | enst00000487509 | sg00000089280 | fus-206 | 16 | 31180150 | 31191602 | + | lnc_RNA | retained_intron |
| -295531 | enst00000380244 | sg00000089280 | fus-202 | 16 | 31180139 | 31191602 | + | mRNA | protein_coding |
| -295531 | enst00000487045 | sg00000089280 | fus-205 | 16 | 31180139 | 31183350 | + | lnc_RNA | retained_intron |
| -295532 | enst00000566605 | sg00000089280 | fus-209 | 16 | 31180138 | 31191602 | + | mRNA | nonsense_mediated_decay |
| -295560 | enst00000254108 | sg00000089280 | fus-201 | 16 | 31180110 | 31194871 | + | mRNA | protein_coding |
| -301097 | enst00000571486 | sg00000262366 | ndufa3p6-201 | 16 | 31174573 | 31174822 | + | pseudogenic_transcript | processed_pseudogene |
| -310022 | enst00000575892 | sg00000263343 | ac009088.4-201 | 16 | 31165648 | 31165927 | + | pseudogenic_transcript | processed_pseudogene |
| 310421 | enst00000570073 | sg00000259810 | ac002519.1-201 | 16 | 31788202 | 31790993 | + | lnc_RNA | lncrna |
| 324716 | enst00000568379 | sg00000260722 | vn1r67p-201 | 16 | 31801585 | 31802497 | - | pseudogenic_transcript | unitary_pseudogene |
| 325166 | enst00000563575 | sg00000261457 | ac002519.2-201 | 16 | 31802947 | 31807973 | + | lnc_RNA | processed_transcript |
| 325182 | enst00000569756 | sg00000261457 | ac002519.2-202 | 16 | 31802963 | 31805921 | + | lnc_RNA | processed_transcript |
| -325587 | enst00000562390 | sg00000178226 | prss36-205 | 16 | 31149272 | 31150083 | - | lnc_RNA | retained_intron |
| -325604 | enst00000418068 | sg00000178226 | prss36-202 | 16 | 31138982 | 31150066 | - | mRNA | protein_coding |
| -325604 | enst00000268281 | sg00000178226 | prss36-201 | 16 | 31138926 | 31150066 | - | mRNA | protein_coding |
| -325609 | enst00000569305 | sg00000178226 | prss36-207 | 16 | 31138994 | 31150061 | - | mRNA | protein_coding |
| -325662 | enst00000561897 | sg00000178226 | prss36-203 | 16 | 31149101 | 31150008 | - | lnc_RNA | retained_intron |
| -326136 | enst00000562368 | sg00000178226 | prss36-204 | 16 | 31138928 | 31149534 | - | lnc_RNA | retained_intron |
| -326136 | enst00000569614 | sg00000178226 | prss36-208 | 16 | 31148466 | 31149534 | - | lnc_RNA | retained_intron |
| 328085 | enst00000567043 | sg00000261457 | ac002519.2-203 | 16 | 31805866 | 31806702 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 331063 | enst00000418822 | sg00000180663 | vn1r3-201 | 16 | 31807926 | 31808844 | - | pseudogenic_transcript | unitary_pseudogene |
| -332812 | enst00000563693 | sg00000178226 | prss36-206 | 16 | 31141464 | 31142858 | - | lnc_RNA | retained_intron |
| -334936 | enst00000571878 | sg00000178226 | prss36-209 | 16 | 31139067 | 31140734 | - | mRNA | nonsense_mediated_decay |
| -339943 | enst00000568261 | sg00000052344 | prss8-206 | 16 | 31131894 | 31135727 | - | mRNA | protein_coding |
| -339943 | enst00000567797 | sg00000052344 | prss8-204 | 16 | 31132879 | 31135727 | - | mRNA | protein_coding |
| -339943 | enst00000317508 | sg00000052344 | prss8-201 | 16 | 31131433 | 31135727 | - | mRNA | protein_coding |
| -339943 | enst00000564025 | sg00000052344 | prss8-202 | 16 | 31133200 | 31135727 | - | lnc_RNA | retained_intron |
| -339967 | enst00000567833 | sg00000052344 | prss8-205 | 16 | 31134042 | 31135703 | - | lnc_RNA | retained_intron |
| -340030 | enst00000567531 | sg00000052344 | prss8-203 | 16 | 31132439 | 31135640 | - | mRNA | protein_coding |
| -344237 | enst00000563605 | sg00000261385 | ac009088.3-201 | 16 | 31131433 | 31131877 | + | lnc_RNA | lncrna |
| -345214 | enst00000573144 | sg00000103510 | kat8-207 | 16 | 31130456 | 31131359 | + | lnc_RNA | retained_intron |
| -348398 | enst00000537402 | sg00000103510 | kat8-203 | 16 | 31127272 | 31131393 | + | mRNA | protein_coding |
| -350086 | enst00000538768 | sg00000103510 | kat8-204 | 16 | 31125584 | 31131393 | + | lnc_RNA | retained_intron |
| -351997 | enst00000613584 | sg00000278133 | ac135050.6-202 | 16 | 31123673 | 31124064 | + | lnc_RNA | lncrna |
| -353435 | enst00000610813 | sg00000278133 | ac135050.6-201 | 16 | 31122235 | 31123953 | + | lnc_RNA | lncrna |
| -357592 | enst00000576336 | sg00000262766 | ac135050.5-201 | 16 | 31118078 | 31118747 | + | lnc_RNA | lncrna |
| -357973 | enst00000539683 | sg00000103510 | kat8-205 | 16 | 31117697 | 31121118 | + | lnc_RNA | retained_intron |
| -358006 | enst00000448516 | sg00000103510 | kat8-202 | 16 | 31117664 | 31131359 | + | mRNA | protein_coding |
| -358006 | enst00000219797 | sg00000103510 | kat8-201 | 16 | 31117664 | 31131359 | + | mRNA | protein_coding |
| -359916 | enst00000543774 | sg00000103510 | kat8-206 | 16 | 31115754 | 31131393 | + | mRNA | protein_coding |
| -361181 | enst00000652764 | sg00000103510 | kat8-208 | 16 | 31114489 | 31117892 | + | mRNA | protein_coding |
| -364302 | enst00000567682 | sg00000103507 | bckdk-210 | 16 | 31111368 | 31112454 | + | mRNA | protein_coding |
| -366550 | enst00000484226 | sg00000103507 | bckdk-205 | 16 | 31109120 | 31110722 | + | mRNA | protein_coding |
| -366736 | enst00000567676 | sg00000103507 | bckdk-209 | 16 | 31108934 | 31109579 | + | mRNA | protein_coding |
| -367186 | enst00000561755 | sg00000103507 | bckdk-206 | 16 | 31108484 | 31109403 | + | mRNA | protein_coding |
| -367221 | enst00000566568 | sg00000103507 | bckdk-207 | 16 | 31108449 | 31112566 | + | lnc_RNA | retained_intron |
| -367284 | enst00000219794 | sg00000103507 | bckdk-201 | 16 | 31108386 | 31112791 | + | mRNA | protein_coding |
| -367376 | enst00000287507 | sg00000103507 | bckdk-202 | 16 | 31108294 | 31112567 | + | mRNA | protein_coding |
| -367376 | enst00000394950 | sg00000103507 | bckdk-203 | 16 | 31108294 | 31112567 | + | mRNA | protein_coding |
| -367376 | enst00000567530 | sg00000103507 | bckdk-208 | 16 | 31108294 | 31112533 | + | mRNA | nonsense_mediated_decay |
| -369563 | enst00000394951 | sg00000103507 | bckdk-204 | 16 | 31106107 | 31112567 | + | mRNA | protein_coding |
| -379690 | enst00000498155 | sg00000167397 | vkorc1-208 | 16 | 31091175 | 31095980 | - | mRNA | protein_coding |
| -380037 | enst00000420057 | sg00000167397 | vkorc1-206 | 16 | 31090842 | 31095633 | - | mRNA | protein_coding |
| -380714 | enst00000529564 | sg00000255439 | ac135050.2-203 | 16 | 31086868 | 31094956 | - | mRNA | protein_coding |
| -380714 | enst00000354895 | sg00000167397 | vkorc1-203 | 16 | 31090842 | 31094956 | - | mRNA | protein_coding |
| -380730 | enst00000319788 | sg00000167397 | vkorc1-202 | 16 | 31090842 | 31094940 | - | mRNA | protein_coding |
| -380754 | enst00000532364 | sg00000255439 | ac135050.2-202 | 16 | 31086760 | 31094916 | - | mRNA | protein_coding |
| -380873 | enst00000394975 | sg00000167397 | vkorc1-205 | 16 | 31090854 | 31094797 | - | mRNA | protein_coding |
| -380910 | enst00000300851 | sg00000167397 | vkorc1-201 | 16 | 31090842 | 31094760 | - | mRNA | protein_coding |
| -381068 | enst00000533518 | sg00000255439 | ac135050.2-201 | 16 | 31083439 | 31094602 | - | mRNA | nonsense_mediated_decay |
| -381121 | enst00000394971 | sg00000167397 | vkorc1-204 | 16 | 31091104 | 31094549 | - | mRNA | protein_coding |
| -381943 | enst00000624508 | sg00000280160 | ac135050.7-201 | 16 | 31093727 | 31095944 | + | unconfirmed_transcript | tec |
| -382059 | enst00000472468 | sg00000167397 | vkorc1-207 | 16 | 31091182 | 31093611 | - | mRNA | protein_coding |
| 385852 | enst00000569805 | sg00000261284 | rbm22p13-201 | 16 | 31863633 | 31864876 | + | pseudogenic_transcript | processed_pseudogene |
| -386042 | enst00000486499 | sg00000151006 | prss53-202 | 16 | 31083437 | 31089628 | - | lnc_RNA | retained_intron |
| -386707 | enst00000280606 | sg00000151006 | prss53-201 | 16 | 31083425 | 31088963 | - | mRNA | protein_coding |
| -386942 | enst00000492427 | sg00000151006 | prss53-203 | 16 | 31086015 | 31088728 | - | lnc_RNA | retained_intron |
| 393343 | enst00000561866 | sg00000259874 | ac034105.2-201 | 16 | 31870887 | 31871124 | - | pseudogenic_transcript | processed_pseudogene |
| 396026 | enst00000394846 | sg00000185947 | znf267-202 | 16 | 31873807 | 31914725 | + | mRNA | protein_coding |
| 396026 | enst00000300870 | sg00000185947 | znf267-201 | 16 | 31873807 | 31917357 | + | mRNA | protein_coding |
| 396050 | enst00000566541 | sg00000185947 | znf267-205 | 16 | 31873831 | 31914558 | + | mRNA | nonsense_mediated_decay |
| 396052 | enst00000561814 | sg00000185947 | znf267-203 | 16 | 31873833 | 31914527 | + | mRNA | nonsense_mediated_decay |
| 396285 | enst00000562971 | sg00000185947 | znf267-204 | 16 | 31874066 | 31914620 | + | mRNA | protein_coding |
| -399768 | enst00000394979 | sg00000167395 | znf646-202 | 16 | 31075902 | 31084019 | + | mRNA | protein_coding |
| -401227 | enst00000428260 | sg00000167395 | znf646-203 | 16 | 31074443 | 31077044 | + | mRNA | protein_coding |
| -401247 | enst00000564189 | sg00000167395 | znf646-204 | 16 | 31074423 | 31076488 | + | mRNA | protein_coding |
| -401248 | enst00000300850 | sg00000167395 | znf646-201 | 16 | 31074422 | 31084196 | + | mRNA | protein_coding |
| -401430 | enst00000300849 | sg00000167394 | znf668-201 | 16 | 31060847 | 31074240 | - | mRNA | protein_coding |
| -401486 | enst00000564456 | sg00000167394 | znf668-210 | 16 | 31064650 | 31074184 | - | lnc_RNA | processed_transcript |
| -401958 | enst00000414399 | sg00000167394 | znf668-203 | 16 | 31062122 | 31073712 | - | mRNA | protein_coding |
| -402168 | enst00000538906 | sg00000167394 | znf668-208 | 16 | 31060848 | 31073502 | - | mRNA | protein_coding |
| -402168 | enst00000394983 | sg00000167394 | znf668-202 | 16 | 31060850 | 31073502 | - | mRNA | protein_coding |
| -402843 | enst00000417935 | sg00000167394 | znf668-204 | 16 | 31064184 | 31072827 | - | mRNA | protein_coding |
| -410175 | enst00000568708 | sg00000261124 | ac135050.4-201 | 16 | 31065495 | 31069246 | + | lnc_RNA | lncrna |
| -410582 | enst00000442862 | sg00000167394 | znf668-206 | 16 | 31063969 | 31065088 | - | mRNA | protein_coding |
| -410582 | enst00000535577 | sg00000167394 | znf668-207 | 16 | 31060843 | 31065088 | - | mRNA | protein_coding |
| -410615 | enst00000539836 | sg00000167394 | znf668-209 | 16 | 31060851 | 31065055 | - | mRNA | protein_coding |
| -410701 | enst00000426488 | sg00000167394 | znf668-205 | 16 | 31060848 | 31064969 | - | mRNA | protein_coding |
| -416193 | enst00000417110 | sg00000232748 | ac135050.1-202 | 16 | 31059477 | 31062763 | + | lnc_RNA | lncrna |
| 417202 | enst00000565294 | sg00000259950 | ac034105.3-201 | 16 | 31894542 | 31894983 | - | pseudogenic_transcript | processed_pseudogene |
| -419210 | enst00000622229 | sg00000232748 | ac135050.1-201 | 16 | 31056460 | 31062803 | + | lnc_RNA | lncrna |
| -432520 | enst00000570266 | sg00000260911 | ac135050.3-201 | 16 | 31043150 | 31049868 | + | lnc_RNA | lncrna |
| 434073 | enst00000575471 | sg00000185947 | znf267-206 | 16 | 31911854 | 31916852 | + | lnc_RNA | retained_intron |
| -436350 | enst00000564368 | sg00000103496 | stx4-214 | 16 | 31039320 | 31040147 | + | lnc_RNA | processed_transcript |
| -436590 | enst00000503629 | sg00000103496 | stx4-213 | 16 | 31039080 | 31042975 | + | lnc_RNA | processed_transcript |
| -437051 | enst00000468583 | sg00000103496 | stx4-206 | 16 | 31038619 | 31040168 | + | lnc_RNA | retained_intron |
| -437069 | enst00000475862 | sg00000103496 | stx4-207 | 16 | 31038601 | 31040168 | + | lnc_RNA | retained_intron |
| -437160 | enst00000486660 | sg00000103496 | stx4-209 | 16 | 31038510 | 31040012 | + | lnc_RNA | retained_intron |
| -441865 | enst00000613541 | sg00000103496 | stx4-217 | 16 | 31033805 | 31034877 | + | mRNA | protein_coding |
| -441884 | enst00000478150 | sg00000103496 | stx4-208 | 16 | 31033786 | 31034507 | + | lnc_RNA | retained_intron |
| -442064 | enst00000565483 | sg00000103496 | stx4-215 | 16 | 31033606 | 31034853 | + | lnc_RNA | retained_intron |
| -442082 | enst00000461455 | sg00000103496 | stx4-205 | 16 | 31033588 | 31034877 | + | lnc_RNA | retained_intron |
| -442112 | enst00000313843 | sg00000103496 | stx4-201 | 16 | 31033558 | 31040164 | + | mRNA | protein_coding |
| -442113 | enst00000566353 | sg00000103496 | stx4-216 | 16 | 31033557 | 31039747 | + | lnc_RNA | retained_intron |
| -442123 | enst00000496977 | sg00000103496 | stx4-212 | 16 | 31033547 | 31038647 | + | mRNA | nonsense_mediated_decay |
| -442123 | enst00000460668 | sg00000103496 | stx4-204 | 16 | 31033547 | 31038187 | + | mRNA | nonsense_mediated_decay |
| -442124 | enst00000487411 | sg00000103496 | stx4-210 | 16 | 31033546 | 31039803 | + | lnc_RNA | retained_intron |
| -442575 | enst00000394998 | sg00000103496 | stx4-202 | 16 | 31033095 | 31040163 | + | mRNA | protein_coding |
| -442575 | enst00000493902 | sg00000103496 | stx4-211 | 16 | 31033095 | 31040129 | + | lnc_RNA | processed_transcript |
| -442781 | enst00000457779 | sg00000103496 | stx4-203 | 16 | 31032889 | 31035032 | + | mRNA | protein_coding |
| -465032 | enst00000215095 | sg00000099365 | stx1b-201 | 16 | 30989256 | 31010638 | - | mRNA | protein_coding |
| -465274 | enst00000565419 | sg00000099365 | stx1b-202 | 16 | 30993082 | 31010396 | - | mRNA | protein_coding |
| 474379 | enst00000564017 | sg00000261289 | ac034105.5-201 | 16 | 31952160 | 31952473 | + | pseudogenic_transcript | processed_pseudogene |
| -478626 | enst00000566211 | sg00000099365 | stx1b-203 | 16 | 30996199 | 30997044 | - | lnc_RNA | retained_intron |
| 484282 | enst00000563488 | sg00000197476 | ac034105.1-201 | 16 | 31962063 | 31962381 | + | pseudogenic_transcript | processed_pseudogene |
| 486022 | enst00000568304 | sg00000260218 | ac034105.4-201 | 16 | 31963803 | 31964079 | + | pseudogenic_transcript | processed_pseudogene |
| -487400 | enst00000624286 | sg00000279196 | ac135048.4-201 | 16 | 30984630 | 30988270 | - | unconfirmed_transcript | tec |
| -490454 | enst00000574447 | sg00000099377 | hsd3b7-204 | 16 | 30985216 | 30986703 | + | mRNA | protein_coding |
| -490455 | enst00000562932 | sg00000099377 | hsd3b7-203 | 16 | 30985215 | 30986707 | + | mRNA | protein_coding |
| -490463 | enst00000262520 | sg00000099377 | hsd3b7-201 | 16 | 30985207 | 30989146 | + | mRNA | protein_coding |
| -490463 | enst00000297679 | sg00000099377 | hsd3b7-202 | 16 | 30985207 | 30989147 | + | mRNA | protein_coding |
| -495617 | enst00000640410 | sg00000099381 | setd1a-203 | 16 | 30980053 | 30980851 | + | lnc_RNA | retained_intron |
| 498022 | enst00000568208 | sg00000260628 | ac142381.3-201 | 16 | 31975803 | 32003728 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc