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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #188 | 12 | 57224680 | 57225762 | 1082 | 3 | 36 | 2.1764e-14 | 1.15129e-12 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 3811 | enst00000556825 | sg00000182199 | shmt2-226 | 12 | 57229573 | 57234935 | + | mRNA | nonsense_mediated_decay |
| 3899 | enst00000557740 | sg00000182199 | shmt2-235 | 12 | 57229661 | 57231913 | + | lnc_RNA | processed_transcript |
| 3922 | enst00000554600 | sg00000182199 | shmt2-213 | 12 | 57229684 | 57232572 | + | lnc_RNA | processed_transcript |
| 3949 | enst00000554467 | sg00000182199 | shmt2-212 | 12 | 57229711 | 57234726 | + | lnc_RNA | retained_intron |
| 3949 | enst00000553324 | sg00000182199 | shmt2-204 | 12 | 57229711 | 57231979 | + | lnc_RNA | retained_intron |
| 3949 | enst00000557487 | sg00000182199 | shmt2-232 | 12 | 57229711 | 57234726 | + | mRNA | protein_coding |
| 3949 | enst00000328923 | sg00000182199 | shmt2-201 | 12 | 57229711 | 57234935 | + | mRNA | protein_coding |
| 3953 | enst00000553950 | sg00000182199 | shmt2-210 | 12 | 57229715 | 57231769 | + | lnc_RNA | retained_intron |
| 3961 | enst00000555634 | sg00000182199 | shmt2-220 | 12 | 57229723 | 57233811 | + | mRNA | protein_coding |
| 3962 | enst00000556689 | sg00000182199 | shmt2-223 | 12 | 57229724 | 57232822 | + | mRNA | protein_coding |
| 3978 | enst00000557269 | sg00000182199 | shmt2-227 | 12 | 57229740 | 57232773 | + | mRNA | nonsense_mediated_decay |
| 3987 | enst00000555563 | sg00000182199 | shmt2-219 | 12 | 57229749 | 57233239 | + | mRNA | nonsense_mediated_decay |
| 3997 | enst00000557433 | sg00000182199 | shmt2-231 | 12 | 57229759 | 57234726 | + | mRNA | nonsense_mediated_decay |
| 4324 | enst00000414700 | sg00000182199 | shmt2-202 | 12 | 57230086 | 57234726 | + | mRNA | protein_coding |
| 4341 | enst00000557348 | sg00000182199 | shmt2-229 | 12 | 57230103 | 57234476 | + | mRNA | nonsense_mediated_decay |
| 4353 | enst00000557703 | sg00000182199 | shmt2-234 | 12 | 57230115 | 57231890 | + | mRNA | protein_coding |
| 4405 | enst00000553529 | sg00000182199 | shmt2-206 | 12 | 57230167 | 57231906 | + | mRNA | protein_coding |
| 4405 | enst00000554310 | sg00000182199 | shmt2-211 | 12 | 57230167 | 57232241 | + | mRNA | protein_coding |
| 4409 | enst00000557302 | sg00000182199 | shmt2-228 | 12 | 57230171 | 57231185 | + | lnc_RNA | retained_intron |
| 4436 | enst00000617433 | sg00000276727 | ac137834.2-201 | 12 | 57229498 | 57230198 | - | lnc_RNA | lncrna |
| 4513 | enst00000554656 | sg00000182199 | shmt2-215 | 12 | 57230275 | 57232534 | + | lnc_RNA | processed_transcript |
| 4518 | enst00000557427 | sg00000182199 | shmt2-230 | 12 | 57230280 | 57232238 | + | mRNA | protein_coding |
| 4566 | enst00000553474 | sg00000182199 | shmt2-205 | 12 | 57230328 | 57234551 | + | mRNA | protein_coding |
| 4592 | enst00000555773 | sg00000182199 | shmt2-221 | 12 | 57230354 | 57231913 | + | mRNA | protein_coding |
| 4598 | enst00000449049 | sg00000182199 | shmt2-203 | 12 | 57230360 | 57234699 | + | mRNA | protein_coding |
| 4598 | enst00000554975 | sg00000182199 | shmt2-216 | 12 | 57230360 | 57232568 | + | mRNA | protein_coding |
| 4598 | enst00000555774 | sg00000182199 | shmt2-222 | 12 | 57230360 | 57234935 | + | mRNA | nonsense_mediated_decay |
| 4606 | enst00000555116 | sg00000182199 | shmt2-217 | 12 | 57230368 | 57234763 | + | mRNA | nonsense_mediated_decay |
| 4622 | enst00000553837 | sg00000182199 | shmt2-207 | 12 | 57230384 | 57234726 | + | mRNA | nonsense_mediated_decay |
| 4632 | enst00000554604 | sg00000182199 | shmt2-214 | 12 | 57230394 | 57232801 | + | mRNA | nonsense_mediated_decay |
| -4811 | enst00000555154 | sg00000182379 | nxph4-202 | 12 | 57219869 | 57225419 | + | lnc_RNA | processed_transcript |
| 4939 | enst00000553949 | sg00000182199 | shmt2-209 | 12 | 57230701 | 57232261 | + | lnc_RNA | processed_transcript |
| 4941 | enst00000556737 | sg00000182199 | shmt2-224 | 12 | 57230703 | 57231906 | + | mRNA | protein_coding |
| 5400 | enst00000553868 | sg00000182199 | shmt2-208 | 12 | 57231162 | 57232399 | + | lnc_RNA | retained_intron |
| 5686 | enst00000555213 | sg00000182199 | shmt2-218 | 12 | 57231448 | 57232487 | + | lnc_RNA | retained_intron |
| 6699 | enst00000557529 | sg00000182199 | shmt2-233 | 12 | 57232461 | 57234694 | + | mRNA | protein_coding |
| -7851 | enst00000556415 | sg00000182379 | nxph4-203 | 12 | 57216829 | 57226448 | + | mRNA | nonsense_mediated_decay |
| 7872 | enst00000556798 | sg00000182199 | shmt2-225 | 12 | 57233634 | 57234244 | + | lnc_RNA | retained_intron |
| -7886 | enst00000349394 | sg00000182379 | nxph4-201 | 12 | 57216794 | 57226449 | + | mRNA | protein_coding |
| 11323 | enst00000554688 | sg00000185633 | ndufa4l2-203 | 12 | 57236189 | 57237085 | - | lnc_RNA | retained_intron |
| 11330 | enst00000556732 | sg00000185633 | ndufa4l2-206 | 12 | 57235080 | 57237092 | - | mRNA | protein_coding |
| 11338 | enst00000555173 | sg00000185633 | ndufa4l2-204 | 12 | 57234911 | 57237100 | - | lnc_RNA | retained_intron |
| 11576 | enst00000554503 | sg00000185633 | ndufa4l2-202 | 12 | 57234903 | 57237338 | - | mRNA | protein_coding |
| 14930 | enst00000393825 | sg00000185633 | ndufa4l2-201 | 12 | 57234905 | 57240692 | - | mRNA | protein_coding |
| 14941 | enst00000556234 | sg00000185633 | ndufa4l2-205 | 12 | 57237256 | 57240703 | - | lnc_RNA | processed_transcript |
| 14953 | enst00000557276 | sg00000185633 | ndufa4l2-207 | 12 | 57239546 | 57240715 | - | lnc_RNA | processed_transcript |
| -21062 | enst00000556356 | sg00000123384 | lrp1-211 | 12 | 57203618 | 57213340 | + | lnc_RNA | retained_intron |
| -21437 | enst00000451724 | sg00000123384 | lrp1-203 | 12 | 57203243 | 57205785 | + | lnc_RNA | retained_intron |
| -21860 | enst00000556247 | sg00000123384 | lrp1-210 | 12 | 57202820 | 57203531 | + | lnc_RNA | retained_intron |
| 22602 | enst00000554003 | sg00000185482 | stac3-205 | 12 | 57244757 | 57248364 | - | lnc_RNA | retained_intron |
| -23572 | enst00000555124 | sg00000123384 | lrp1-208 | 12 | 57201108 | 57203276 | + | mRNA | protein_coding |
| -24406 | enst00000555941 | sg00000123384 | lrp1-209 | 12 | 57200274 | 57201153 | + | lnc_RNA | retained_intron |
| 25422 | enst00000554578 | sg00000185482 | stac3-206 | 12 | 57243453 | 57251184 | - | mRNA | protein_coding |
| 25423 | enst00000546246 | sg00000185482 | stac3-202 | 12 | 57243654 | 57251185 | - | mRNA | protein_coding |
| 25424 | enst00000557176 | sg00000185482 | stac3-207 | 12 | 57243459 | 57251186 | - | mRNA | nonsense_mediated_decay |
| 25424 | enst00000553294 | sg00000185482 | stac3-203 | 12 | 57249019 | 57251186 | - | lnc_RNA | retained_intron |
| 25425 | enst00000332782 | sg00000185482 | stac3-201 | 12 | 57243458 | 57251187 | - | mRNA | protein_coding |
| 25426 | enst00000553489 | sg00000185482 | stac3-204 | 12 | 57248126 | 57251188 | - | mRNA | protein_coding |
| -30176 | enst00000408438 | sg00000221365 | mir1228-201 | 12 | 57194504 | 57194576 | + | miRNA | mirna |
| -37311 | enst00000554118 | sg00000123384 | lrp1-206 | 12 | 57187369 | 57192969 | + | mRNA | protein_coding |
| 42695 | enst00000548161 | sg00000179912 | r3hdm2-212 | 12 | 57256014 | 57268457 | - | lnc_RNA | processed_transcript |
| 42815 | enst00000546843 | sg00000179912 | r3hdm2-209 | 12 | 57256490 | 57268577 | - | lnc_RNA | processed_transcript |
| -57235 | enst00000553446 | sg00000123384 | lrp1-205 | 12 | 57167445 | 57169300 | + | lnc_RNA | processed_transcript |
| -60252 | enst00000556830 | sg00000123384 | lrp1-212 | 12 | 57164428 | 57166412 | + | lnc_RNA | retained_intron |
| 69717 | enst00000429355 | sg00000179912 | r3hdm2-206 | 12 | 57254733 | 57295479 | - | mRNA | protein_coding |
| 69832 | enst00000547019 | sg00000179912 | r3hdm2-210 | 12 | 57280461 | 57295594 | - | lnc_RNA | retained_intron |
| 70722 | enst00000548184 | sg00000258830 | ac137834.1-201 | 12 | 57249609 | 57296484 | - | mRNA | nonsense_mediated_decay |
| 71271 | enst00000393811 | sg00000179912 | r3hdm2-203 | 12 | 57253762 | 57297033 | - | lnc_RNA | retained_intron |
| 73674 | enst00000547262 | sg00000179912 | r3hdm2-211 | 12 | 57280430 | 57299436 | - | mRNA | protein_coding |
| -77061 | enst00000555461 | sg00000259125 | lrp1-as-202 | 12 | 57144620 | 57147619 | - | lnc_RNA | lncrna |
| -77151 | enst00000554476 | sg00000259125 | lrp1-as-201 | 12 | 57146490 | 57147529 | - | lnc_RNA | lncrna |
| 77418 | enst00000552428 | sg00000179912 | r3hdm2-214 | 12 | 57297763 | 57303180 | - | lnc_RNA | processed_transcript |
| 84689 | enst00000551465 | sg00000179912 | r3hdm2-213 | 12 | 57298004 | 57310451 | - | lnc_RNA | retained_intron |
| 84701 | enst00000358907 | sg00000179912 | r3hdm2-202 | 12 | 57253765 | 57310463 | - | mRNA | protein_coding |
| 84701 | enst00000441731 | sg00000179912 | r3hdm2-207 | 12 | 57253765 | 57310463 | - | mRNA | protein_coding |
| -92541 | enst00000553499 | sg00000166888 | stat6-208 | 12 | 57106708 | 57132139 | - | mRNA | protein_coding |
| -95580 | enst00000556155 | sg00000166888 | stat6-219 | 12 | 57096341 | 57129100 | - | mRNA | protein_coding |
| -95771 | enst00000554174 | sg00000123384 | lrp1-207 | 12 | 57128909 | 57155593 | + | mRNA | protein_coding |
| -95964 | enst00000338962 | sg00000123384 | lrp1-202 | 12 | 57128716 | 57150059 | + | mRNA | protein_coding |
| -96187 | enst00000553277 | sg00000123384 | lrp1-204 | 12 | 57128493 | 57150059 | + | mRNA | protein_coding |
| -96197 | enst00000243077 | sg00000123384 | lrp1-201 | 12 | 57128483 | 57213361 | + | mRNA | protein_coding |
| -113247 | enst00000553533 | sg00000166888 | stat6-209 | 12 | 57095478 | 57111433 | - | mRNA | protein_coding |
| -113267 | enst00000553275 | sg00000166888 | stat6-206 | 12 | 57107666 | 57111413 | - | mRNA | protein_coding |
| -113306 | enst00000454075 | sg00000166888 | stat6-202 | 12 | 57096365 | 57111374 | - | mRNA | protein_coding |
| -113306 | enst00000640254 | sg00000166888 | stat6-224 | 12 | 57096723 | 57111374 | - | mRNA | protein_coding |
| -113318 | enst00000300134 | sg00000166888 | stat6-201 | 12 | 57095408 | 57111362 | - | mRNA | protein_coding |
| -113318 | enst00000554764 | sg00000166888 | stat6-212 | 12 | 57095852 | 57111362 | - | mRNA | nonsense_mediated_decay |
| -113321 | enst00000537215 | sg00000166888 | stat6-203 | 12 | 57096345 | 57111359 | - | mRNA | protein_coding |
| -113334 | enst00000538913 | sg00000166888 | stat6-204 | 12 | 57096200 | 57111346 | - | mRNA | protein_coding |
| -113340 | enst00000651176 | sg00000166888 | stat6-225 | 12 | 57095433 | 57111340 | - | mRNA | nonsense_mediated_decay |
| -113449 | enst00000556259 | sg00000166888 | stat6-220 | 12 | 57106693 | 57111231 | - | mRNA | protein_coding |
| -113488 | enst00000553397 | sg00000166888 | stat6-207 | 12 | 57106737 | 57111192 | - | mRNA | protein_coding |
| -114137 | enst00000555849 | sg00000166888 | stat6-218 | 12 | 57106693 | 57110543 | - | mRNA | protein_coding |
| -114340 | enst00000557635 | sg00000166888 | stat6-222 | 12 | 57107637 | 57110340 | - | mRNA | protein_coding |
| -114374 | enst00000543873 | sg00000166888 | stat6-205 | 12 | 57096248 | 57110306 | - | mRNA | protein_coding |
| -114374 | enst00000554663 | sg00000166888 | stat6-211 | 12 | 57107256 | 57110306 | - | mRNA | protein_coding |
| -114391 | enst00000555104 | sg00000166888 | stat6-213 | 12 | 57106750 | 57110289 | - | mRNA | nonsense_mediated_decay |
| 115720 | enst00000403821 | sg00000179912 | r3hdm2-205 | 12 | 57254756 | 57341482 | - | mRNA | protein_coding |
| -116397 | enst00000555641 | sg00000166888 | stat6-217 | 12 | 57104468 | 57108283 | - | lnc_RNA | retained_intron |
| -119363 | enst00000557781 | sg00000166888 | stat6-223 | 12 | 57103273 | 57105317 | - | lnc_RNA | retained_intron |
| -121690 | enst00000555375 | sg00000166888 | stat6-216 | 12 | 57099419 | 57102990 | - | lnc_RNA | retained_intron |
| -122233 | enst00000555222 | sg00000166888 | stat6-214 | 12 | 57095904 | 57102447 | - | lnc_RNA | retained_intron |
| -124886 | enst00000555318 | sg00000166888 | stat6-215 | 12 | 57097105 | 57099794 | - | mRNA | protein_coding |
| -125576 | enst00000554202 | sg00000166888 | stat6-210 | 12 | 57098745 | 57099104 | - | lnc_RNA | retained_intron |
| -127390 | enst00000557563 | sg00000166888 | stat6-221 | 12 | 57096243 | 57097290 | - | lnc_RNA | retained_intron |
| -132531 | enst00000554839 | sg00000166886 | nab2-204 | 12 | 57092149 | 57093146 | + | lnc_RNA | retained_intron |
| -135533 | enst00000554718 | sg00000166886 | nab2-203 | 12 | 57089147 | 57091816 | + | lnc_RNA | processed_transcript |
| -135566 | enst00000300131 | sg00000166886 | nab2-201 | 12 | 57089114 | 57095476 | + | mRNA | protein_coding |
| -135586 | enst00000342556 | sg00000166886 | nab2-202 | 12 | 57089094 | 57095475 | + | mRNA | protein_coding |
| -135637 | enst00000555857 | sg00000166886 | nab2-205 | 12 | 57089043 | 57091509 | + | lnc_RNA | processed_transcript |
| -136617 | enst00000553654 | sg00000166881 | nemp1-203 | 12 | 57070674 | 57088063 | - | lnc_RNA | processed_transcript |
| -145889 | enst00000300128 | sg00000166881 | nemp1-201 | 12 | 57055643 | 57078791 | - | mRNA | protein_coding |
| -145917 | enst00000379391 | sg00000166881 | nemp1-202 | 12 | 57055643 | 57078763 | - | mRNA | protein_coding |
| -145917 | enst00000554340 | sg00000166881 | nemp1-204 | 12 | 57059590 | 57078763 | - | mRNA | nonsense_mediated_decay |
| -173482 | enst00000471791 | sg00000166866 | myo1a-204 | 12 | 57047931 | 57051198 | - | lnc_RNA | processed_transcript |
| -173505 | enst00000433964 | sg00000166866 | myo1a-202 | 12 | 57047663 | 57051175 | - | mRNA | protein_coding |
| -173853 | enst00000492945 | sg00000166866 | myo1a-208 | 12 | 57041463 | 57050827 | - | mRNA | protein_coding |
| -173915 | enst00000442789 | sg00000166866 | myo1a-203 | 12 | 57028517 | 57050765 | - | mRNA | protein_coding |
| -174551 | enst00000300119 | sg00000166866 | myo1a-201 | 12 | 57028517 | 57050129 | - | mRNA | protein_coding |
| -176850 | enst00000554234 | sg00000166866 | myo1a-209 | 12 | 57028618 | 57047830 | - | mRNA | nonsense_mediated_decay |
| -185240 | enst00000476795 | sg00000166866 | myo1a-205 | 12 | 57038438 | 57039440 | - | lnc_RNA | processed_transcript |
| 189534 | enst00000364328 | sg00000201198 | rnu6-879p-201 | 12 | 57415296 | 57415403 | + | snRNA | snrna |
| -193593 | enst00000487083 | sg00000166866 | myo1a-207 | 12 | 57029963 | 57031087 | - | lnc_RNA | retained_intron |
| -193594 | enst00000477864 | sg00000166866 | myo1a-206 | 12 | 57029366 | 57031086 | - | lnc_RNA | processed_transcript |
| -195797 | enst00000415231 | sg00000166863 | tac3-205 | 12 | 57012378 | 57028883 | - | mRNA | protein_coding |
| 205028 | enst00000448732 | sg00000179912 | r3hdm2-208 | 12 | 57310340 | 57430790 | - | mRNA | protein_coding |
| 205046 | enst00000634871 | sg00000179912 | r3hdm2-215 | 12 | 57253776 | 57430808 | - | mRNA | protein_coding |
| 205243 | enst00000402412 | sg00000179912 | r3hdm2-204 | 12 | 57253765 | 57431005 | - | mRNA | protein_coding |
| 205243 | enst00000347140 | sg00000179912 | r3hdm2-201 | 12 | 57253764 | 57431005 | - | mRNA | protein_coding |
| 205354 | enst00000547552 | sg00000258001 | ac126614.1-201 | 12 | 57431116 | 57433935 | + | lnc_RNA | lncrna |
| -208142 | enst00000357616 | sg00000166863 | tac3-202 | 12 | 57010000 | 57016538 | - | mRNA | nonsense_mediated_decay |
| -208151 | enst00000496757 | sg00000166863 | tac3-210 | 12 | 57013167 | 57016529 | - | lnc_RNA | retained_intron |
| -208151 | enst00000458521 | sg00000166863 | tac3-209 | 12 | 57010000 | 57016529 | - | mRNA | protein_coding |
| -208160 | enst00000615887 | sg00000166863 | tac3-211 | 12 | 57010010 | 57016520 | - | mRNA | protein_coding |
| -208160 | enst00000441881 | sg00000166863 | tac3-208 | 12 | 57010010 | 57016520 | - | mRNA | protein_coding |
| -208160 | enst00000300108 | sg00000166863 | tac3-201 | 12 | 57010010 | 57016520 | - | mRNA | nonsense_mediated_decay |
| -208160 | enst00000379411 | sg00000166863 | tac3-203 | 12 | 57010010 | 57016520 | - | mRNA | nonsense_mediated_decay |
| -208160 | enst00000393867 | sg00000166863 | tac3-204 | 12 | 57010010 | 57016520 | - | mRNA | nonsense_mediated_decay |
| -208160 | enst00000423597 | sg00000166863 | tac3-206 | 12 | 57010010 | 57016520 | - | mRNA | nonsense_mediated_decay |
| -208160 | enst00000438756 | sg00000166863 | tac3-207 | 12 | 57010010 | 57016520 | - | mRNA | nonsense_mediated_decay |
| 209022 | enst00000309668 | sg00000175189 | inhbc-201 | 12 | 57434784 | 57452062 | + | mRNA | protein_coding |
| -218134 | enst00000300101 | sg00000166860 | zbtb39-201 | 12 | 56998836 | 57006546 | - | mRNA | protein_coding |
| 226561 | enst00000551553 | sg00000139269 | inhbe-203 | 12 | 57452323 | 57459280 | + | lnc_RNA | processed_transcript |
| -227719 | enst00000622922 | sg00000166856 | gpr182-203 | 12 | 56996961 | 56997551 | + | mRNA | protein_coding |
| -228421 | enst00000556850 | sg00000166856 | gpr182-202 | 12 | 56996259 | 56998441 | + | mRNA | protein_coding |
| 228941 | enst00000547970 | sg00000139269 | inhbe-202 | 12 | 57454703 | 57456782 | + | mRNA | protein_coding |
| 229545 | enst00000266646 | sg00000139269 | inhbe-201 | 12 | 57455307 | 57458025 | + | mRNA | protein_coding |
| -230188 | enst00000300098 | sg00000166856 | gpr182-201 | 12 | 56994492 | 56998447 | + | mRNA | protein_coding |
| 230210 | enst00000553033 | sg00000139269 | inhbe-204 | 12 | 57455972 | 57456638 | + | lnc_RNA | processed_transcript |
| 234023 | enst00000228682 | sg00000111087 | gli1-201 | 12 | 57459785 | 57472268 | + | mRNA | protein_coding |
| 234373 | enst00000543426 | sg00000111087 | gli1-207 | 12 | 57460135 | 57472260 | + | mRNA | protein_coding |
| 234373 | enst00000532291 | sg00000111087 | gli1-206 | 12 | 57460135 | 57466387 | + | mRNA | protein_coding |
| 234389 | enst00000546141 | sg00000111087 | gli1-208 | 12 | 57460151 | 57472260 | + | mRNA | protein_coding |
| 234729 | enst00000528432 | sg00000111087 | gli1-203 | 12 | 57460491 | 57464867 | + | mRNA | protein_coding |
| 234751 | enst00000530789 | sg00000111087 | gli1-205 | 12 | 57460513 | 57464943 | + | lnc_RNA | retained_intron |
| -236946 | enst00000670536 | sg00000287715 | ac026120.3-201 | 12 | 56987734 | 56990756 | + | lnc_RNA | lncrna |
| 237056 | enst00000656936 | sg00000287200 | ac022506.2-201 | 12 | 57457596 | 57462818 | - | lnc_RNA | lncrna |
| 237930 | enst00000528467 | sg00000111087 | gli1-204 | 12 | 57463692 | 57472059 | + | mRNA | protein_coding |
| -238720 | enst00000611536 | sg00000278399 | ac026120.1-201 | 12 | 56981211 | 56985960 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 239613 | enst00000527742 | sg00000111087 | gli1-202 | 12 | 57465375 | 57466141 | + | lnc_RNA | retained_intron |
| 249172 | enst00000550399 | sg00000123329 | arhgap9-214 | 12 | 57472265 | 57474934 | - | mRNA | protein_coding |
| 249378 | enst00000546704 | sg00000123329 | arhgap9-206 | 12 | 57474269 | 57475140 | - | lnc_RNA | retained_intron |
| 249601 | enst00000550130 | sg00000123329 | arhgap9-212 | 12 | 57472676 | 57475363 | - | mRNA | protein_coding |
| 249649 | enst00000550440 | sg00000123329 | arhgap9-215 | 12 | 57472477 | 57475411 | - | lnc_RNA | retained_intron |
| 249683 | enst00000549133 | sg00000166986 | mars1-218 | 12 | 57475445 | 57487473 | + | lnc_RNA | processed_transcript |
| 250575 | enst00000547200 | sg00000123329 | arhgap9-207 | 12 | 57476158 | 57476337 | - | lnc_RNA | processed_transcript |
| 250879 | enst00000552953 | sg00000123329 | arhgap9-224 | 12 | 57472264 | 57476641 | - | lnc_RNA | retained_intron |
| 252022 | enst00000551452 | sg00000123329 | arhgap9-218 | 12 | 57476871 | 57477784 | - | mRNA | protein_coding |
| 252054 | enst00000547216 | sg00000123329 | arhgap9-208 | 12 | 57476934 | 57477816 | - | lnc_RNA | retained_intron |
| 252089 | enst00000546200 | sg00000123329 | arhgap9-205 | 12 | 57472266 | 57477851 | - | lnc_RNA | retained_intron |
| 252094 | enst00000550454 | sg00000123329 | arhgap9-216 | 12 | 57476136 | 57477856 | - | lnc_RNA | processed_transcript |
| 252105 | enst00000551000 | sg00000123329 | arhgap9-217 | 12 | 57477214 | 57477867 | - | lnc_RNA | retained_intron |
| 252111 | enst00000552604 | sg00000123329 | arhgap9-223 | 12 | 57476377 | 57477873 | - | mRNA | protein_coding |
| 252274 | enst00000551574 | sg00000123329 | arhgap9-219 | 12 | 57476831 | 57478036 | - | lnc_RNA | retained_intron |
| 252297 | enst00000548139 | sg00000123329 | arhgap9-209 | 12 | 57475485 | 57478059 | - | mRNA | protein_coding |
| 252388 | enst00000549602 | sg00000123329 | arhgap9-211 | 12 | 57477480 | 57478150 | - | mRNA | protein_coding |
| 252436 | enst00000430041 | sg00000123329 | arhgap9-204 | 12 | 57472270 | 57478198 | - | mRNA | protein_coding |
| 252575 | enst00000548148 | sg00000123329 | arhgap9-210 | 12 | 57476078 | 57478337 | - | lnc_RNA | retained_intron |
| 252848 | enst00000552066 | sg00000123329 | arhgap9-220 | 12 | 57476888 | 57478610 | - | mRNA | protein_coding |
| 253870 | enst00000424809 | sg00000123329 | arhgap9-203 | 12 | 57472264 | 57479632 | - | mRNA | protein_coding |
| 254084 | enst00000552420 | sg00000123329 | arhgap9-222 | 12 | 57476730 | 57479846 | - | lnc_RNA | retained_intron |
| 254104 | enst00000552249 | sg00000123329 | arhgap9-221 | 12 | 57477543 | 57479866 | - | mRNA | protein_coding |
| 254104 | enst00000393791 | sg00000123329 | arhgap9-201 | 12 | 57472269 | 57479866 | - | mRNA | protein_coding |
| 261532 | enst00000537638 | sg00000166986 | mars1-203 | 12 | 57487294 | 57517569 | + | mRNA | nonsense_mediated_decay |
| 262262 | enst00000548674 | sg00000166986 | mars1-213 | 12 | 57488024 | 57498241 | + | lnc_RNA | processed_transcript |
| 262294 | enst00000550449 | sg00000166986 | mars1-221 | 12 | 57488056 | 57490342 | + | lnc_RNA | retained_intron |
| 262300 | enst00000546481 | sg00000166986 | mars1-205 | 12 | 57488062 | 57489519 | + | lnc_RNA | retained_intron |
| 262304 | enst00000545888 | sg00000166986 | mars1-204 | 12 | 57488066 | 57516655 | + | mRNA | nonsense_mediated_decay |
| 262306 | enst00000262027 | sg00000166986 | mars1-201 | 12 | 57488068 | 57516652 | + | mRNA | protein_coding |
| 262306 | enst00000628866 | sg00000166986 | mars1-233 | 12 | 57488068 | 57516649 | + | mRNA | protein_coding |
| 262306 | enst00000447721 | sg00000166986 | mars1-202 | 12 | 57488068 | 57512154 | + | lnc_RNA | processed_transcript |
| 262306 | enst00000549074 | sg00000166986 | mars1-217 | 12 | 57488068 | 57498185 | + | mRNA | nonsense_mediated_decay |
| 262306 | enst00000547501 | sg00000166986 | mars1-208 | 12 | 57488068 | 57490234 | + | mRNA | nonsense_mediated_decay |
| 262306 | enst00000551431 | sg00000166986 | mars1-223 | 12 | 57488068 | 57490621 | + | mRNA | nonsense_mediated_decay |
| 262306 | enst00000553162 | sg00000166986 | mars1-232 | 12 | 57488068 | 57490033 | + | lnc_RNA | retained_intron |
| 262306 | enst00000551842 | sg00000166986 | mars1-225 | 12 | 57488068 | 57489783 | + | lnc_RNA | retained_intron |
| 262306 | enst00000548714 | sg00000166986 | mars1-214 | 12 | 57488068 | 57489610 | + | lnc_RNA | retained_intron |
| 262306 | enst00000547062 | sg00000166986 | mars1-207 | 12 | 57488068 | 57489457 | + | lnc_RNA | retained_intron |
| 262323 | enst00000551892 | sg00000166986 | mars1-226 | 12 | 57488085 | 57500423 | + | mRNA | nonsense_mediated_decay |
| 262323 | enst00000552007 | sg00000166986 | mars1-227 | 12 | 57488085 | 57490358 | + | mRNA | nonsense_mediated_decay |
| 262329 | enst00000630803 | sg00000166986 | mars1-235 | 12 | 57488091 | 57490351 | + | mRNA | protein_coding |
| 262329 | enst00000630571 | sg00000166986 | mars1-234 | 12 | 57488091 | 57489911 | + | mRNA | protein_coding |
| 262450 | enst00000548146 | sg00000166986 | mars1-210 | 12 | 57488212 | 57489283 | + | lnc_RNA | processed_transcript |
| 262859 | enst00000670128 | sg00000123329 | arhgap9-225 | 12 | 57472517 | 57488621 | - | mRNA | protein_coding |
| 262924 | enst00000553123 | sg00000166986 | mars1-231 | 12 | 57488686 | 57490216 | + | lnc_RNA | retained_intron |
| 262964 | enst00000550288 | sg00000123329 | arhgap9-213 | 12 | 57472266 | 57488726 | - | mRNA | protein_coding |
| 263052 | enst00000393797 | sg00000123329 | arhgap9-202 | 12 | 57472264 | 57488814 | - | mRNA | protein_coding |
| 263768 | enst00000552371 | sg00000166986 | mars1-228 | 12 | 57489530 | 57500430 | + | mRNA | protein_coding |
| -265306 | enst00000360752 | sg00000139547 | rdh16-201 | 12 | 56951438 | 56959374 | - | lnc_RNA | processed_transcript |
| -266361 | enst00000398138 | sg00000139547 | rdh16-202 | 12 | 56951431 | 56958319 | - | mRNA | protein_coding |
| 274352 | enst00000549827 | sg00000166986 | mars1-220 | 12 | 57500114 | 57504280 | + | lnc_RNA | retained_intron |
| 274596 | enst00000548944 | sg00000166986 | mars1-215 | 12 | 57500358 | 57516655 | + | mRNA | protein_coding |
| 278224 | enst00000549603 | sg00000166986 | mars1-219 | 12 | 57503986 | 57511785 | + | lnc_RNA | retained_intron |
| -283198 | enst00000617239 | sg00000278400 | ac026120.2-201 | 12 | 56941174 | 56941482 | - | pseudogenic_transcript | processed_pseudogene |
| 285824 | enst00000546971 | sg00000166986 | mars1-206 | 12 | 57511586 | 57512964 | + | lnc_RNA | retained_intron |
| 286007 | enst00000548630 | sg00000166986 | mars1-212 | 12 | 57511769 | 57512464 | + | lnc_RNA | retained_intron |
| 286035 | enst00000549048 | sg00000166986 | mars1-216 | 12 | 57511797 | 57514842 | + | lnc_RNA | retained_intron |
| 286729 | enst00000548202 | sg00000166986 | mars1-211 | 12 | 57512491 | 57515234 | + | lnc_RNA | retained_intron |
| 286926 | enst00000620653 | sg00000284152 | mir6758-201 | 12 | 57512688 | 57512750 | + | miRNA | mirna |
| 287168 | enst00000552914 | sg00000166986 | mars1-230 | 12 | 57512930 | 57516655 | + | mRNA | protein_coding |
| 289060 | enst00000551805 | sg00000166986 | mars1-224 | 12 | 57514822 | 57515493 | + | lnc_RNA | retained_intron |
| 289388 | enst00000547665 | sg00000166986 | mars1-209 | 12 | 57515150 | 57516655 | + | mRNA | protein_coding |
| 289419 | enst00000552499 | sg00000166986 | mars1-229 | 12 | 57515181 | 57516648 | + | mRNA | nonsense_mediated_decay |
| 289421 | enst00000551172 | sg00000166986 | mars1-222 | 12 | 57515183 | 57516647 | + | mRNA | nonsense_mediated_decay |
| -290272 | enst00000293502 | sg00000170426 | sdr9c7-201 | 12 | 56923133 | 56934408 | - | mRNA | protein_coding |
| 293497 | enst00000385293 | sg00000208028 | mir616-201 | 12 | 57519163 | 57519259 | - | miRNA | mirna |
| 294718 | enst00000642841 | sg00000285133 | ac022506.1-201 | 12 | 57517712 | 57520480 | - | mRNA | protein_coding |
| 294730 | enst00000547303 | sg00000175197 | ddit3-202 | 12 | 57516588 | 57520492 | - | mRNA | protein_coding |
| 294749 | enst00000552740 | sg00000175197 | ddit3-205 | 12 | 57516809 | 57520511 | - | mRNA | protein_coding |
| 294749 | enst00000547526 | sg00000175197 | ddit3-203 | 12 | 57516953 | 57520511 | - | mRNA | protein_coding |
| 294755 | enst00000551116 | sg00000175197 | ddit3-204 | 12 | 57516589 | 57520517 | - | mRNA | protein_coding |
| 294755 | enst00000346473 | sg00000175197 | ddit3-201 | 12 | 57516593 | 57520517 | - | mRNA | protein_coding |
| 294948 | enst00000548887 | sg00000166987 | mbd6-207 | 12 | 57520710 | 57525414 | + | mRNA | protein_coding |
| 295203 | enst00000551351 | sg00000166987 | mbd6-211 | 12 | 57520965 | 57524765 | + | mRNA | protein_coding |
| 295286 | enst00000549231 | sg00000166987 | mbd6-209 | 12 | 57521048 | 57524764 | + | lnc_RNA | processed_transcript |
| 295918 | enst00000546805 | sg00000166987 | mbd6-203 | 12 | 57521680 | 57524956 | + | mRNA | protein_coding |
| 295975 | enst00000623876 | sg00000175197 | ddit3-206 | 12 | 57516588 | 57521737 | - | mRNA | protein_coding |
| 297062 | enst00000355673 | sg00000166987 | mbd6-201 | 12 | 57522824 | 57530148 | + | mRNA | protein_coding |
| 297078 | enst00000546632 | sg00000166987 | mbd6-202 | 12 | 57522840 | 57524766 | + | mRNA | protein_coding |
| 297080 | enst00000549623 | sg00000166987 | mbd6-210 | 12 | 57522842 | 57525455 | + | mRNA | protein_coding |
| 297301 | enst00000552255 | sg00000166987 | mbd6-213 | 12 | 57523063 | 57524742 | + | mRNA | protein_coding |
| 298267 | enst00000549042 | sg00000166987 | mbd6-208 | 12 | 57524029 | 57525091 | + | mRNA | nonsense_mediated_decay |
| 298557 | enst00000552659 | sg00000166987 | mbd6-214 | 12 | 57524319 | 57526653 | + | mRNA | protein_coding |
| 300881 | enst00000547545 | sg00000166987 | mbd6-204 | 12 | 57526643 | 57530143 | + | mRNA | nonsense_mediated_decay |
| 301740 | enst00000548550 | sg00000166987 | mbd6-206 | 12 | 57527502 | 57528190 | + | lnc_RNA | retained_intron |
| 302150 | enst00000552163 | sg00000166987 | mbd6-212 | 12 | 57527912 | 57528712 | + | mRNA | protein_coding |
| 303240 | enst00000547844 | sg00000166987 | mbd6-205 | 12 | 57529002 | 57530146 | + | mRNA | nonsense_mediated_decay |
| 308210 | enst00000550988 | sg00000175203 | dctn2-219 | 12 | 57532267 | 57533972 | - | lnc_RNA | retained_intron |
| 308640 | enst00000551872 | sg00000175203 | dctn2-223 | 12 | 57532795 | 57534402 | - | lnc_RNA | retained_intron |
| 308768 | enst00000548736 | sg00000175203 | dctn2-210 | 12 | 57532978 | 57534530 | - | lnc_RNA | retained_intron |
| 309308 | enst00000546758 | sg00000175203 | dctn2-205 | 12 | 57530679 | 57535070 | - | mRNA | protein_coding |
| 309377 | enst00000552390 | sg00000175203 | dctn2-224 | 12 | 57532590 | 57535139 | - | lnc_RNA | retained_intron |
| 309784 | enst00000551142 | sg00000175203 | dctn2-220 | 12 | 57534382 | 57535546 | - | lnc_RNA | retained_intron |
| 310083 | enst00000550086 | sg00000175203 | dctn2-214 | 12 | 57532635 | 57535845 | - | mRNA | protein_coding |
| 310083 | enst00000551611 | sg00000175203 | dctn2-222 | 12 | 57533953 | 57535845 | - | lnc_RNA | processed_transcript |
| 310083 | enst00000548949 | sg00000175203 | dctn2-211 | 12 | 57534346 | 57535845 | - | lnc_RNA | processed_transcript |
| 310321 | enst00000550576 | sg00000175203 | dctn2-216 | 12 | 57535484 | 57536083 | - | lnc_RNA | retained_intron |
| 312790 | enst00000546965 | sg00000175203 | dctn2-206 | 12 | 57534009 | 57538552 | - | lnc_RNA | processed_transcript |
| 312804 | enst00000551400 | sg00000175203 | dctn2-221 | 12 | 57535060 | 57538566 | - | lnc_RNA | processed_transcript |
| 321358 | enst00000549394 | sg00000175203 | dctn2-212 | 12 | 57530617 | 57547120 | - | mRNA | nonsense_mediated_decay |
| 321359 | enst00000550954 | sg00000175203 | dctn2-218 | 12 | 57532793 | 57547121 | - | mRNA | protein_coding |
| 321379 | enst00000434715 | sg00000175203 | dctn2-201 | 12 | 57530311 | 57547141 | - | mRNA | protein_coding |
| 321390 | enst00000550201 | sg00000175203 | dctn2-215 | 12 | 57530354 | 57547152 | - | mRNA | nonsense_mediated_decay |
| 321410 | enst00000543672 | sg00000175203 | dctn2-202 | 12 | 57530689 | 57547172 | - | mRNA | protein_coding |
| 321412 | enst00000549712 | sg00000175203 | dctn2-213 | 12 | 57546028 | 57547174 | - | lnc_RNA | processed_transcript |
| 321423 | enst00000546670 | sg00000175203 | dctn2-204 | 12 | 57532994 | 57547185 | - | mRNA | protein_coding |
| 321426 | enst00000547345 | sg00000175203 | dctn2-207 | 12 | 57534978 | 57547188 | - | lnc_RNA | retained_intron |
| 321431 | enst00000546559 | sg00000175203 | dctn2-203 | 12 | 57542947 | 57547193 | - | lnc_RNA | processed_transcript |
| 321444 | enst00000547480 | sg00000175203 | dctn2-208 | 12 | 57535495 | 57547206 | - | lnc_RNA | retained_intron |
| 321462 | enst00000550750 | sg00000175203 | dctn2-217 | 12 | 57534341 | 57547224 | - | mRNA | protein_coding |
| 321569 | enst00000548249 | sg00000175203 | dctn2-209 | 12 | 57530102 | 57547331 | - | mRNA | protein_coding |
| 324282 | enst00000286452 | sg00000155980 | kif5a-201 | 12 | 57550044 | 57584648 | + | mRNA | protein_coding |
| 324282 | enst00000455537 | sg00000155980 | kif5a-202 | 12 | 57550044 | 57586633 | + | mRNA | protein_coding |
| -352970 | enst00000556917 | sg00000258679 | ac121758.2-202 | 12 | 56871710 | 56872367 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 355916 | enst00000552227 | sg00000155980 | kif5a-203 | 12 | 57581678 | 57582874 | + | lnc_RNA | retained_intron |
| -363305 | enst00000391081 | sg00000212383 | ac121758.1-201 | 12 | 56861375 | 56861508 | + | snoRNA | snorna |
| 365412 | enst00000422156 | sg00000166908 | pip4k2c-202 | 12 | 57591174 | 57601926 | + | mRNA | protein_coding |
| 365430 | enst00000354947 | sg00000166908 | pip4k2c-201 | 12 | 57591192 | 57603418 | + | mRNA | protein_coding |
| 365441 | enst00000540759 | sg00000166908 | pip4k2c-203 | 12 | 57591203 | 57603418 | + | mRNA | protein_coding |
| 365460 | enst00000551772 | sg00000166908 | pip4k2c-208 | 12 | 57591222 | 57599094 | + | mRNA | protein_coding |
| 365481 | enst00000550465 | sg00000166908 | pip4k2c-207 | 12 | 57591243 | 57601879 | + | mRNA | protein_coding |
| 365484 | enst00000550360 | sg00000166908 | pip4k2c-206 | 12 | 57591246 | 57599144 | + | mRNA | nonsense_mediated_decay |
| 365504 | enst00000550095 | sg00000166908 | pip4k2c-205 | 12 | 57591266 | 57600436 | + | mRNA | nonsense_mediated_decay |
| -368986 | enst00000553271 | sg00000258816 | ac121758.3-201 | 12 | 56855694 | 56855886 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 373328 | enst00000548264 | sg00000166908 | pip4k2c-204 | 12 | 57599090 | 57600977 | + | mRNA | protein_coding |
| 378860 | enst00000548804 | sg00000178498 | dtx3-204 | 12 | 57604622 | 57609800 | + | mRNA | protein_coding |
| 378861 | enst00000551835 | sg00000178498 | dtx3-209 | 12 | 57604623 | 57607009 | + | mRNA | protein_coding |
| 378861 | enst00000550596 | sg00000178498 | dtx3-207 | 12 | 57604623 | 57606511 | + | mRNA | protein_coding |
| 378877 | enst00000549583 | sg00000178498 | dtx3-205 | 12 | 57604639 | 57607467 | + | mRNA | protein_coding |
| 379062 | enst00000337737 | sg00000178498 | dtx3-201 | 12 | 57604824 | 57609802 | + | mRNA | protein_coding |
| 379062 | enst00000548198 | sg00000178498 | dtx3-202 | 12 | 57604824 | 57609803 | + | mRNA | protein_coding |
| 379072 | enst00000551632 | sg00000178498 | dtx3-208 | 12 | 57604834 | 57609804 | + | mRNA | protein_coding |
| 379245 | enst00000548478 | sg00000178498 | dtx3-203 | 12 | 57605007 | 57607466 | + | mRNA | protein_coding |
| 381738 | enst00000550300 | sg00000178498 | dtx3-206 | 12 | 57607500 | 57609196 | + | mRNA | protein_coding |
| -383407 | enst00000611595 | sg00000273536 | ac121758.4-201 | 12 | 56840973 | 56841273 | - | pseudogenic_transcript | processed_pseudogene |
| 384418 | enst00000333972 | sg00000240771 | arhgef25-202 | 12 | 57610180 | 57617243 | + | mRNA | protein_coding |
| 385673 | enst00000286494 | sg00000240771 | arhgef25-201 | 12 | 57611435 | 57617245 | + | mRNA | protein_coding |
| 386151 | enst00000616622 | sg00000240771 | arhgef25-207 | 12 | 57611913 | 57617242 | + | mRNA | protein_coding |
| 388232 | enst00000471370 | sg00000240771 | arhgef25-205 | 12 | 57613994 | 57617217 | + | lnc_RNA | retained_intron |
| 388675 | enst00000469072 | sg00000240771 | arhgef25-204 | 12 | 57614437 | 57616014 | + | lnc_RNA | retained_intron |
| 388731 | enst00000466399 | sg00000240771 | arhgef25-203 | 12 | 57614493 | 57615893 | + | lnc_RNA | retained_intron |
| 388811 | enst00000484357 | sg00000240771 | arhgef25-206 | 12 | 57614573 | 57615031 | + | lnc_RNA | retained_intron |
| 389518 | enst00000474359 | sg00000287908 | ac025165.6-201 | 12 | 57615280 | 57626125 | + | mRNA | nonsense_mediated_decay |
| 390543 | enst00000610219 | sg00000224713 | ac025165.1-204 | 12 | 57615492 | 57616305 | - | lnc_RNA | lncrna |
| 390621 | enst00000477314 | sg00000287908 | ac025165.6-202 | 12 | 57616383 | 57619379 | + | lnc_RNA | processed_transcript |
| 392303 | enst00000356672 | sg00000224713 | ac025165.1-201 | 12 | 57612118 | 57618065 | - | lnc_RNA | lncrna |
| 392409 | enst00000444467 | sg00000224713 | ac025165.1-202 | 12 | 57612339 | 57618171 | - | lnc_RNA | lncrna |
| 393765 | enst00000665594 | sg00000135502 | slc26a10-211 | 12 | 57619527 | 57626036 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| 393774 | enst00000637859 | sg00000135502 | slc26a10-209 | 12 | 57619536 | 57620418 | + | lnc_RNA | processed_transcript |
| 393876 | enst00000593846 | sg00000224713 | ac025165.1-203 | 12 | 57615228 | 57619638 | - | lnc_RNA | lncrna |
| 394148 | enst00000320442 | sg00000135502 | slc26a10-201 | 12 | 57619910 | 57626150 | + | mRNA | protein_coding |
| 394148 | enst00000661867 | sg00000135502 | slc26a10-210 | 12 | 57619910 | 57626131 | + | lnc_RNA | retained_intron |
| 394587 | enst00000440686 | sg00000135502 | slc26a10-202 | 12 | 57620349 | 57626150 | + | lnc_RNA | processed_transcript |
| 395141 | enst00000497297 | sg00000135502 | slc26a10-208 | 12 | 57620903 | 57621697 | + | lnc_RNA | retained_intron |
| 395285 | enst00000463802 | sg00000135502 | slc26a10-203 | 12 | 57621047 | 57622771 | + | lnc_RNA | retained_intron |
| 397924 | enst00000487816 | sg00000135502 | slc26a10-206 | 12 | 57623686 | 57626151 | + | lnc_RNA | retained_intron |
| 398504 | enst00000474791 | sg00000135502 | slc26a10-204 | 12 | 57624266 | 57625549 | + | lnc_RNA | retained_intron |
| 398752 | enst00000490243 | sg00000135502 | slc26a10-207 | 12 | 57624514 | 57626150 | + | lnc_RNA | processed_transcript |
| 399134 | enst00000483647 | sg00000135502 | slc26a10-205 | 12 | 57624896 | 57626151 | + | lnc_RNA | processed_transcript |
| -401695 | enst00000557452 | sg00000258679 | ac121758.2-201 | 12 | 56822985 | 56874268 | + | lnc_RNA | processed_transcript |
| 402967 | enst00000547741 | sg00000135454 | b4galnt1-204 | 12 | 57626941 | 57628729 | - | mRNA | protein_coding |
| 403603 | enst00000552468 | sg00000135454 | b4galnt1-214 | 12 | 57626172 | 57629365 | - | lnc_RNA | retained_intron |
| 405325 | enst00000549391 | sg00000135454 | b4galnt1-207 | 12 | 57628167 | 57631087 | - | mRNA | nonsense_mediated_decay |
| 406885 | enst00000418555 | sg00000135454 | b4galnt1-202 | 12 | 57626428 | 57632647 | - | mRNA | protein_coding |
| 406887 | enst00000552219 | sg00000135454 | b4galnt1-212 | 12 | 57630507 | 57632649 | - | mRNA | nonsense_mediated_decay |
| 406893 | enst00000552798 | sg00000135454 | b4galnt1-215 | 12 | 57626476 | 57632655 | - | mRNA | nonsense_mediated_decay |
| 406906 | enst00000552350 | sg00000135454 | b4galnt1-213 | 12 | 57629344 | 57632668 | - | mRNA | protein_coding |
| 406906 | enst00000548888 | sg00000135454 | b4galnt1-206 | 12 | 57630152 | 57632668 | - | mRNA | protein_coding |
| 406917 | enst00000550943 | sg00000135454 | b4galnt1-209 | 12 | 57631157 | 57632679 | - | lnc_RNA | processed_transcript |
| 406918 | enst00000551925 | sg00000135454 | b4galnt1-211 | 12 | 57631128 | 57632680 | - | lnc_RNA | retained_intron |
| 407181 | enst00000548487 | sg00000135454 | b4galnt1-205 | 12 | 57630997 | 57632943 | - | mRNA | nonsense_mediated_decay |
| 407389 | enst00000553142 | sg00000135454 | b4galnt1-216 | 12 | 57623410 | 57633151 | - | lnc_RNA | retained_intron |
| 407439 | enst00000341156 | sg00000135454 | b4galnt1-201 | 12 | 57623409 | 57633201 | - | mRNA | protein_coding |
| 407440 | enst00000550764 | sg00000135454 | b4galnt1-208 | 12 | 57629329 | 57633202 | - | mRNA | protein_coding |
| 407443 | enst00000551220 | sg00000135454 | b4galnt1-210 | 12 | 57631222 | 57633205 | - | mRNA | protein_coding |
| 407477 | enst00000449184 | sg00000135454 | b4galnt1-203 | 12 | 57628452 | 57633239 | - | mRNA | protein_coding |
| -438751 | enst00000553476 | sg00000025423 | hsd17b6-202 | 12 | 56785929 | 56787345 | + | lnc_RNA | processed_transcript |
| -439741 | enst00000556875 | sg00000025423 | hsd17b6-210 | 12 | 56784939 | 56787345 | + | lnc_RNA | processed_transcript |
| 448903 | enst00000480739 | sg00000242990 | rpl13ap23-201 | 12 | 57674665 | 57675250 | + | pseudogenic_transcript | processed_pseudogene |
| -461356 | enst00000322165 | sg00000025423 | hsd17b6-201 | 12 | 56763324 | 56787790 | + | mRNA | protein_coding |
| 468193 | enst00000552285 | sg00000135506 | os9-220 | 12 | 57693955 | 57720998 | + | mRNA | protein_coding |
| 468261 | enst00000549897 | sg00000135506 | os9-211 | 12 | 57694023 | 57695148 | + | lnc_RNA | retained_intron |
| 468370 | enst00000550848 | sg00000135506 | os9-217 | 12 | 57694132 | 57696278 | + | mRNA | nonsense_mediated_decay |
| 468370 | enst00000315970 | sg00000135506 | os9-202 | 12 | 57694132 | 57721557 | + | mRNA | protein_coding |
| 468375 | enst00000547079 | sg00000135506 | os9-209 | 12 | 57694137 | 57719061 | + | mRNA | protein_coding |
| 468377 | enst00000552787 | sg00000135506 | os9-222 | 12 | 57694139 | 57716181 | + | mRNA | nonsense_mediated_decay |
| 468381 | enst00000439210 | sg00000135506 | os9-207 | 12 | 57694143 | 57721219 | + | mRNA | protein_coding |
| 468381 | enst00000551285 | sg00000135506 | os9-219 | 12 | 57694143 | 57696078 | + | mRNA | nonsense_mediated_decay |
| 468383 | enst00000435406 | sg00000135506 | os9-206 | 12 | 57694145 | 57721555 | + | mRNA | protein_coding |
| 468383 | enst00000257966 | sg00000135506 | os9-201 | 12 | 57694145 | 57721555 | + | mRNA | protein_coding |
| 468383 | enst00000551035 | sg00000135506 | os9-218 | 12 | 57694145 | 57721395 | + | mRNA | protein_coding |
| 468383 | enst00000413095 | sg00000135506 | os9-205 | 12 | 57694145 | 57721331 | + | mRNA | protein_coding |
| 468383 | enst00000389146 | sg00000135506 | os9-204 | 12 | 57694145 | 57721024 | + | mRNA | protein_coding |
| 468384 | enst00000550372 | sg00000135506 | os9-213 | 12 | 57694146 | 57715847 | + | mRNA | protein_coding |
| 468385 | enst00000553208 | sg00000135506 | os9-223 | 12 | 57694147 | 57715951 | + | lnc_RNA | retained_intron |
| 468385 | enst00000389142 | sg00000135506 | os9-203 | 12 | 57694147 | 57721557 | + | mRNA | protein_coding |
| 468392 | enst00000550793 | sg00000135506 | os9-216 | 12 | 57694154 | 57695996 | + | lnc_RNA | retained_intron |
| 468398 | enst00000552423 | sg00000135506 | os9-221 | 12 | 57694160 | 57696030 | + | mRNA | nonsense_mediated_decay |
| 469734 | enst00000549307 | sg00000135506 | os9-210 | 12 | 57695496 | 57721557 | + | lnc_RNA | retained_intron |
| -472193 | enst00000554155 | sg00000025423 | hsd17b6-204 | 12 | 56752487 | 56774118 | + | mRNA | protein_coding |
| -472223 | enst00000556481 | sg00000025423 | hsd17b6-208 | 12 | 56752457 | 56770544 | + | lnc_RNA | processed_transcript |
| -472227 | enst00000556650 | sg00000025423 | hsd17b6-209 | 12 | 56752453 | 56774078 | + | mRNA | protein_coding |
| -472227 | enst00000554150 | sg00000025423 | hsd17b6-203 | 12 | 56752453 | 56787576 | + | mRNA | protein_coding |
| -472231 | enst00000554643 | sg00000025423 | hsd17b6-205 | 12 | 56752449 | 56787790 | + | mRNA | protein_coding |
| -472306 | enst00000672280 | sg00000198056 | prim1-209 | 12 | 56731296 | 56752374 | - | mRNA | protein_coding |
| -472307 | enst00000552590 | sg00000198056 | prim1-208 | 12 | 56731596 | 56752373 | - | mRNA | nonsense_mediated_decay |
| -472341 | enst00000548173 | sg00000198056 | prim1-203 | 12 | 56746146 | 56752339 | - | lnc_RNA | retained_intron |
| -472357 | enst00000550770 | sg00000198056 | prim1-206 | 12 | 56741443 | 56752323 | - | mRNA | protein_coding |
| -472357 | enst00000338193 | sg00000198056 | prim1-201 | 12 | 56731580 | 56752323 | - | mRNA | protein_coding |
| -472367 | enst00000550224 | sg00000198056 | prim1-205 | 12 | 56743514 | 56752313 | - | lnc_RNA | retained_intron |
| -472411 | enst00000546761 | sg00000198056 | prim1-202 | 12 | 56746033 | 56752269 | - | lnc_RNA | processed_transcript |
| -472519 | enst00000555159 | sg00000025423 | hsd17b6-206 | 12 | 56752161 | 56787736 | + | mRNA | protein_coding |
| -472519 | enst00000555805 | sg00000025423 | hsd17b6-207 | 12 | 56752161 | 56787736 | + | mRNA | protein_coding |
| -472865 | enst00000552408 | sg00000198056 | prim1-207 | 12 | 56746956 | 56751815 | - | lnc_RNA | processed_transcript |
| -481582 | enst00000549549 | sg00000198056 | prim1-204 | 12 | 56738465 | 56743098 | - | mRNA | protein_coding |
| -483145 | enst00000647707 | sg00000285625 | ac117378.1-201 | 12 | 56714612 | 56741535 | - | mRNA | protein_coding |
| 489944 | enst00000550438 | sg00000135506 | os9-214 | 12 | 57715706 | 57718168 | + | lnc_RNA | retained_intron |
| 490215 | enst00000550699 | sg00000135506 | os9-215 | 12 | 57715977 | 57718052 | + | lnc_RNA | retained_intron |
| 490571 | enst00000550202 | sg00000135506 | os9-212 | 12 | 57716333 | 57719182 | + | lnc_RNA | retained_intron |
| -493052 | enst00000549855 | sg00000196531 | naca-213 | 12 | 56713539 | 56731628 | - | mRNA | protein_coding |
| 494449 | enst00000546916 | sg00000135506 | os9-208 | 12 | 57720211 | 57721503 | + | lnc_RNA | retained_intron |
| 495748 | enst00000549477 | sg00000257342 | ac025165.2-201 | 12 | 57694132 | 57721510 | - | lnc_RNA | lncrna |
| -497483 | enst00000356769 | sg00000196531 | naca-201 | 12 | 56712433 | 56727197 | - | mRNA | protein_coding |
| -499138 | enst00000454682 | sg00000196531 | naca-203 | 12 | 56712428 | 56725542 | - | mRNA | protein_coding |
| -499164 | enst00000546917 | sg00000196531 | naca-207 | 12 | 56724505 | 56725516 | - | mRNA | protein_coding |
| -499326 | enst00000546392 | sg00000196531 | naca-204 | 12 | 56712504 | 56725354 | - | mRNA | protein_coding |
| -499376 | enst00000551775 | sg00000196531 | naca-218 | 12 | 56713064 | 56725304 | - | lnc_RNA | processed_transcript |
| -499379 | enst00000551793 | sg00000196531 | naca-219 | 12 | 56713869 | 56725301 | - | lnc_RNA | processed_transcript |
| -499381 | enst00000548563 | sg00000196531 | naca-211 | 12 | 56712440 | 56725299 | - | mRNA | protein_coding |
| -499382 | enst00000547914 | sg00000196531 | naca-208 | 12 | 56712536 | 56725298 | - | mRNA | nonsense_mediated_decay |
| -499385 | enst00000551520 | sg00000196531 | naca-217 | 12 | 56714249 | 56725295 | - | lnc_RNA | retained_intron |
| -499391 | enst00000550952 | sg00000196531 | naca-216 | 12 | 56712427 | 56725289 | - | mRNA | protein_coding |
| -499394 | enst00000550920 | sg00000196531 | naca-215 | 12 | 56712428 | 56725286 | - | mRNA | protein_coding |
| -499395 | enst00000546862 | sg00000196531 | naca-206 | 12 | 56713121 | 56725285 | - | mRNA | protein_coding |
| -499410 | enst00000548084 | sg00000196531 | naca-209 | 12 | 56714381 | 56725270 | - | mRNA | nonsense_mediated_decay |
| -499413 | enst00000393891 | sg00000196531 | naca-202 | 12 | 56712435 | 56725267 | - | mRNA | protein_coding |
| -499424 | enst00000552540 | sg00000196531 | naca-221 | 12 | 56712435 | 56725256 | - | mRNA | protein_coding |
| -499644 | enst00000552055 | sg00000196531 | naca-220 | 12 | 56713116 | 56725036 | - | mRNA | protein_coding |
| -499761 | enst00000549259 | sg00000196531 | naca-212 | 12 | 56712825 | 56724919 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc