PycoMeth
Documentation
GitHub
CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #185 | 5 | 141414667 | 141415625 | 958 | 3 | 33 | 2.00591e-14 | 1.07831e-12 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -1491 | enst00000398610 | sg00000253846 | pcdhga10-201 | 5 | 141413176 | 141512979 | + | mRNA | protein_coding |
| -1680 | enst00000612503 | sg00000253846 | pcdhga10-202 | 5 | 141412987 | 141417448 | + | mRNA | protein_coding |
| 2020 | enst00000612073 | sg00000254122 | pcdhgb7-202 | 5 | 141417645 | 141420429 | + | mRNA | protein_coding |
| 2066 | enst00000398594 | sg00000254122 | pcdhgb7-201 | 5 | 141417691 | 141512979 | + | mRNA | protein_coding |
| 5422 | enst00000622044 | sg00000253873 | pcdhga11-203 | 5 | 141421047 | 141424679 | + | mRNA | protein_coding |
| 5426 | enst00000398587 | sg00000253873 | pcdhga11-201 | 5 | 141421051 | 141512975 | + | mRNA | protein_coding |
| 5603 | enst00000518882 | sg00000253873 | pcdhga11-202 | 5 | 141421228 | 141511183 | + | mRNA | protein_coding |
| -6464 | enst00000520790 | sg00000253305 | pcdhgb6-201 | 5 | 141408203 | 141512979 | + | mRNA | protein_coding |
| -6646 | enst00000616430 | sg00000253305 | pcdhgb6-202 | 5 | 141408021 | 141412621 | + | mRNA | protein_coding |
| 10661 | enst00000507007 | sg00000248449 | pcdhgb8p-202 | 5 | 141426286 | 141429158 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| 10661 | enst00000502926 | sg00000248449 | pcdhgb8p-201 | 5 | 141426286 | 141428258 | + | lnc_RNA | processed_transcript |
| -11714 | enst00000573521 | sg00000261934 | pcdhga9-201 | 5 | 141402953 | 141512979 | + | mRNA | protein_coding |
| -11735 | enst00000616887 | sg00000261934 | pcdhga9-202 | 5 | 141402932 | 141405499 | + | mRNA | protein_coding |
| 12127 | enst00000624928 | sg00000279855 | ac005618.2-201 | 5 | 141427295 | 141427752 | - | lnc_RNA | lncrna |
| 14882 | enst00000252085 | sg00000253159 | pcdhga12-201 | 5 | 141430507 | 141512975 | + | mRNA | protein_coding |
| 14964 | enst00000613314 | sg00000253159 | pcdhga12-202 | 5 | 141430589 | 141433222 | + | mRNA | protein_coding |
| -16539 | enst00000617380 | sg00000276547 | pcdhgb5-201 | 5 | 141398128 | 141512979 | + | mRNA | protein_coding |
| -16680 | enst00000621169 | sg00000276547 | pcdhgb5-202 | 5 | 141397987 | 141400656 | + | mRNA | protein_coding |
| -21853 | enst00000398604 | sg00000253767 | pcdhga8-201 | 5 | 141392814 | 141512979 | + | mRNA | protein_coding |
| 24228 | enst00000618012 | sg00000276545 | pcdhgb9p-201 | 5 | 141439853 | 141442449 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -24510 | enst00000610569 | sg00000253767 | pcdhga8-202 | 5 | 141390157 | 141396636 | + | mRNA | protein_coding |
| -26782 | enst00000519479 | sg00000253953 | pcdhgb4-201 | 5 | 141387885 | 141512979 | + | mRNA | protein_coding |
| -26969 | enst00000615384 | sg00000253953 | pcdhgb4-202 | 5 | 141387698 | 141392422 | + | mRNA | protein_coding |
| -31925 | enst00000518325 | sg00000253537 | pcdhga7-201 | 5 | 141382742 | 141512975 | + | mRNA | protein_coding |
| -31928 | enst00000617050 | sg00000253537 | pcdhga7-202 | 5 | 141382739 | 141386000 | + | mRNA | protein_coding |
| -40674 | enst00000610583 | sg00000253731 | pcdhga6-202 | 5 | 141373993 | 141379642 | + | mRNA | protein_coding |
| -40753 | enst00000517434 | sg00000253731 | pcdhga6-201 | 5 | 141373914 | 141512979 | + | mRNA | protein_coding |
| -44272 | enst00000618934 | sg00000262209 | pcdhgb3-202 | 5 | 141370395 | 141372839 | + | mRNA | protein_coding |
| -44425 | enst00000576222 | sg00000262209 | pcdhgb3-201 | 5 | 141370242 | 141512975 | + | mRNA | protein_coding |
| -50336 | enst00000518069 | sg00000253485 | pcdhga5-201 | 5 | 141364331 | 141512979 | + | mRNA | protein_coding |
| -50435 | enst00000611914 | sg00000253485 | pcdhga5-202 | 5 | 141364232 | 141367783 | + | mRNA | protein_coding |
| 52840 | enst00000622826 | sg00000273557 | ac008781.2-201 | 5 | 141468465 | 141471528 | + | lnc_RNA | lncrna |
| -54531 | enst00000522605 | sg00000253910 | pcdhgb2-201 | 5 | 141360136 | 141512979 | + | mRNA | protein_coding |
| -54625 | enst00000622527 | sg00000253910 | pcdhgb2-202 | 5 | 141360042 | 141362629 | + | mRNA | protein_coding |
| -59627 | enst00000612927 | sg00000262576 | pcdhga4-202 | 5 | 141355040 | 141357730 | + | mRNA | protein_coding |
| -59646 | enst00000571252 | sg00000262576 | pcdhga4-201 | 5 | 141355021 | 141512975 | + | mRNA | protein_coding |
| 60322 | enst00000611950 | sg00000240184 | pcdhgc3-202 | 5 | 141475947 | 141478795 | + | mRNA | protein_coding |
| 60341 | enst00000308177 | sg00000240184 | pcdhgc3-201 | 5 | 141475966 | 141512975 | + | mRNA | protein_coding |
| 60355 | enst00000617641 | sg00000240184 | pcdhgc3-205 | 5 | 141475980 | 141512977 | + | mRNA | protein_coding |
| 60371 | enst00000616230 | sg00000240184 | pcdhgc3-203 | 5 | 141475996 | 141477756 | + | lnc_RNA | processed_transcript |
| 60374 | enst00000621008 | sg00000240184 | pcdhgc3-206 | 5 | 141475999 | 141477227 | + | mRNA | protein_coding |
| 60376 | enst00000617222 | sg00000240184 | pcdhgc3-204 | 5 | 141476001 | 141511230 | + | mRNA | protein_coding |
| 60379 | enst00000622656 | sg00000240184 | pcdhgc3-207 | 5 | 141476004 | 141507291 | + | lnc_RNA | processed_transcript |
| 63691 | enst00000488078 | sg00000242020 | rn7sl68p-201 | 5 | 141479316 | 141479625 | + | ncRNA | misc_rna |
| -64005 | enst00000625053 | sg00000280026 | ac005618.3-201 | 5 | 141350109 | 141350662 | - | lnc_RNA | lncrna |
| -64406 | enst00000523390 | sg00000254221 | pcdhgb1-201 | 5 | 141350261 | 141512979 | + | mRNA | protein_coding |
| -64565 | enst00000611598 | sg00000254221 | pcdhgb1-202 | 5 | 141350102 | 141352693 | + | mRNA | protein_coding |
| 69372 | enst00000617094 | sg00000242419 | pcdhgc4-203 | 5 | 141484997 | 141487789 | + | mRNA | protein_coding |
| 69438 | enst00000610539 | sg00000242419 | pcdhgc4-202 | 5 | 141485063 | 141485767 | + | mRNA | protein_coding |
| 69447 | enst00000618371 | sg00000242419 | pcdhgc4-204 | 5 | 141485072 | 141511496 | + | mRNA | protein_coding |
| 69549 | enst00000306593 | sg00000242419 | pcdhgc4-201 | 5 | 141485174 | 141512979 | + | mRNA | protein_coding |
| -70633 | enst00000612467 | sg00000254245 | pcdhga3-202 | 5 | 141344034 | 141511183 | + | mRNA | nonsense_mediated_decay |
| -70799 | enst00000253812 | sg00000254245 | pcdhga3-201 | 5 | 141343868 | 141512979 | + | mRNA | protein_coding |
| -70838 | enst00000619750 | sg00000254245 | pcdhga3-203 | 5 | 141343829 | 141346523 | + | mRNA | protein_coding |
| 73496 | enst00000252087 | sg00000240764 | pcdhgc5-201 | 5 | 141489121 | 141512979 | + | mRNA | protein_coding |
| 73542 | enst00000610789 | sg00000240764 | pcdhgc5-202 | 5 | 141489167 | 141491929 | + | mRNA | protein_coding |
| -75907 | enst00000528330 | sg00000081853 | pcdhga2-202 | 5 | 141338760 | 141343302 | + | mRNA | protein_coding |
| -75907 | enst00000394576 | sg00000081853 | pcdhga2-201 | 5 | 141338760 | 141512975 | + | mRNA | protein_coding |
| -83982 | enst00000517417 | sg00000204956 | pcdhga1-202 | 5 | 141330685 | 141512981 | + | mRNA | protein_coding |
| -84096 | enst00000378105 | sg00000204956 | pcdhga1-201 | 5 | 141330571 | 141334639 | + | mRNA | protein_coding |
| -88427 | enst00000606674 | sg00000272070 | ac005618.1-202 | 5 | 141326240 | 141327915 | + | lnc_RNA | lncrna |
| -88457 | enst00000606901 | sg00000272070 | ac005618.1-201 | 5 | 141326210 | 141329357 | + | lnc_RNA | lncrna |
| 92445 | enst00000622836 | sg00000240184 | pcdhgc3-208 | 5 | 141508070 | 141511527 | + | lnc_RNA | processed_transcript |
| -93687 | enst00000670972 | sg00000288095 | ac005618.4-201 | 5 | 141320980 | 141325985 | + | lnc_RNA | lncrna |
| -93883 | enst00000313368 | sg00000178913 | taf7-201 | 5 | 141318490 | 141320784 | - | mRNA | protein_coding |
| -93886 | enst00000624761 | sg00000178913 | taf7-203 | 5 | 141319900 | 141320781 | - | mRNA | protein_coding |
| -94022 | enst00000624699 | sg00000178913 | taf7-202 | 5 | 141260225 | 141320645 | - | lnc_RNA | processed_transcript |
| 108885 | enst00000448451 | sg00000131504 | diaph1-205 | 5 | 141515055 | 141524510 | - | mRNA | protein_coding |
| 109104 | enst00000643718 | sg00000131504 | diaph1-216 | 5 | 141515073 | 141524729 | - | lnc_RNA | processed_transcript |
| 109105 | enst00000643312 | sg00000131504 | diaph1-215 | 5 | 141516625 | 141524730 | - | mRNA | protein_coding |
| 109130 | enst00000476339 | sg00000131504 | diaph1-208 | 5 | 141515016 | 141524755 | - | lnc_RNA | retained_intron |
| 109145 | enst00000468119 | sg00000131504 | diaph1-206 | 5 | 141516572 | 141524770 | - | mRNA | protein_coding |
| -110618 | enst00000239451 | sg00000120329 | slc25a2-201 | 5 | 141302635 | 141304049 | - | mRNA | protein_coding |
| 118863 | enst00000494967 | sg00000131504 | diaph1-210 | 5 | 141528545 | 141534488 | - | lnc_RNA | retained_intron |
| 142229 | enst00000518484 | sg00000131504 | diaph1-212 | 5 | 141528800 | 141557854 | - | lnc_RNA | processed_transcript |
| 142686 | enst00000502205 | sg00000246422 | diaph1-as1-201 | 5 | 141558311 | 141565263 | + | lnc_RNA | lncrna |
| 145076 | enst00000491754 | sg00000131504 | diaph1-209 | 5 | 141528544 | 141560701 | - | lnc_RNA | processed_transcript |
| -155432 | enst00000616254 | sg00000277795 | ac244517.3-201 | 5 | 141259235 | 141261364 | + | pseudogenic_transcript | processed_pseudogene |
| 163504 | enst00000472516 | sg00000131504 | diaph1-207 | 5 | 141577989 | 141579129 | - | lnc_RNA | retained_intron |
| -169272 | enst00000231173 | sg00000113248 | pcdhb15-201 | 5 | 141245395 | 141249365 | + | mRNA | protein_coding |
| -169272 | enst00000623671 | sg00000113248 | pcdhb15-202 | 5 | 141245395 | 141246497 | + | mRNA | protein_coding |
| -169287 | enst00000624560 | sg00000280029 | ac244517.11-204 | 5 | 141240739 | 141245380 | - | lnc_RNA | lncrna |
| 171551 | enst00000647330 | sg00000131504 | diaph1-217 | 5 | 141574032 | 141587176 | - | mRNA | nonsense_mediated_decay |
| 171860 | enst00000524301 | sg00000131504 | diaph1-214 | 5 | 141583519 | 141587485 | - | lnc_RNA | processed_transcript |
| -172468 | enst00000624424 | sg00000280029 | ac244517.11-205 | 5 | 141240741 | 141242199 | - | lnc_RNA | lncrna |
| -172488 | enst00000623336 | sg00000280029 | ac244517.11-206 | 5 | 141240844 | 141242179 | - | lnc_RNA | lncrna |
| -172923 | enst00000624192 | sg00000280029 | ac244517.11-201 | 5 | 141136683 | 141241744 | - | lnc_RNA | lncrna |
| -173181 | enst00000665155 | sg00000280029 | ac244517.11-203 | 5 | 141240739 | 141241486 | - | lnc_RNA | lncrna |
| -173210 | enst00000624991 | sg00000280029 | ac244517.11-202 | 5 | 141240739 | 141241457 | - | lnc_RNA | lncrna |
| 173310 | enst00000496103 | sg00000240974 | rps27ap10-201 | 5 | 141588935 | 141589142 | + | pseudogenic_transcript | processed_pseudogene |
| -174546 | enst00000625133 | sg00000262096 | pcdhb19p-202 | 5 | 141240121 | 141243034 | + | lnc_RNA | processed_transcript |
| -174744 | enst00000570871 | sg00000262096 | pcdhb19p-201 | 5 | 141239923 | 141242293 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -180116 | enst00000524813 | sg00000146001 | pcdhb18p-201 | 5 | 141234551 | 141236918 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -180292 | enst00000622990 | sg00000146001 | pcdhb18p-203 | 5 | 141234375 | 141235129 | + | lnc_RNA | processed_transcript |
| -180334 | enst00000526308 | sg00000146001 | pcdhb18p-202 | 5 | 141234333 | 141237529 | + | lnc_RNA | processed_transcript |
| -191295 | enst00000624396 | sg00000279983 | ac244517.10-201 | 5 | 141223372 | 141245861 | + | mRNA | protein_coding |
| -191308 | enst00000624896 | sg00000120327 | pcdhb14-202 | 5 | 141223359 | 141226093 | + | mRNA | protein_coding |
| -191735 | enst00000239449 | sg00000120327 | pcdhb14-201 | 5 | 141222932 | 141227759 | + | mRNA | protein_coding |
| -200748 | enst00000341948 | sg00000187372 | pcdhb13-201 | 5 | 141213919 | 141218979 | + | mRNA | protein_coding |
| 202789 | enst00000422040 | sg00000228737 | ac008781.1-201 | 5 | 141618414 | 141626481 | + | lnc_RNA | lncrna |
| 203289 | enst00000518047 | sg00000131504 | diaph1-211 | 5 | 141515975 | 141618914 | - | mRNA | protein_coding |
| 203374 | enst00000523100 | sg00000131504 | diaph1-213 | 5 | 141577493 | 141618999 | - | mRNA | nonsense_mediated_decay |
| 203375 | enst00000389054 | sg00000131504 | diaph1-202 | 5 | 141515021 | 141619000 | - | mRNA | protein_coding |
| 203430 | enst00000253811 | sg00000131504 | diaph1-201 | 5 | 141515022 | 141619055 | - | mRNA | protein_coding |
| 203430 | enst00000647433 | sg00000131504 | diaph1-218 | 5 | 141515021 | 141619055 | - | mRNA | protein_coding |
| 203430 | enst00000389057 | sg00000131504 | diaph1-203 | 5 | 141515022 | 141619055 | - | mRNA | protein_coding |
| 203430 | enst00000398557 | sg00000131504 | diaph1-204 | 5 | 141515022 | 141619055 | - | mRNA | protein_coding |
| -205948 | enst00000239450 | sg00000120328 | pcdhb12-201 | 5 | 141208719 | 141212571 | + | mRNA | protein_coding |
| -205948 | enst00000622978 | sg00000120328 | pcdhb12-202 | 5 | 141208719 | 141211559 | + | mRNA | protein_coding |
| -205970 | enst00000624949 | sg00000120328 | pcdhb12-203 | 5 | 141208697 | 141211537 | + | mRNA | protein_coding |
| 210445 | enst00000469207 | sg00000171720 | hdac3-204 | 5 | 141620925 | 141626070 | - | lnc_RNA | processed_transcript |
| 210819 | enst00000475549 | sg00000171720 | hdac3-207 | 5 | 141626026 | 141626444 | - | lnc_RNA | retained_intron |
| 210860 | enst00000486618 | sg00000171720 | hdac3-209 | 5 | 141625208 | 141626485 | - | lnc_RNA | retained_intron |
| 212311 | enst00000491581 | sg00000171720 | hdac3-211 | 5 | 141624862 | 141627936 | - | lnc_RNA | retained_intron |
| 212937 | enst00000459727 | sg00000171720 | hdac3-202 | 5 | 141621485 | 141628562 | - | lnc_RNA | processed_transcript |
| -213271 | enst00000624549 | sg00000278936 | ac244517.4-201 | 5 | 141183401 | 141201396 | - | lnc_RNA | lncrna |
| 213599 | enst00000476739 | sg00000171720 | hdac3-208 | 5 | 141627899 | 141629224 | - | lnc_RNA | retained_intron |
| 213633 | enst00000492407 | sg00000171720 | hdac3-212 | 5 | 141625750 | 141629258 | - | lnc_RNA | retained_intron |
| 214117 | enst00000490808 | sg00000171720 | hdac3-210 | 5 | 141628605 | 141629742 | - | lnc_RNA | retained_intron |
| 214347 | enst00000467533 | sg00000171720 | hdac3-203 | 5 | 141625701 | 141629972 | - | lnc_RNA | retained_intron |
| -215040 | enst00000354757 | sg00000197479 | pcdhb11-201 | 5 | 141199627 | 141203779 | + | mRNA | protein_coding |
| -215057 | enst00000624887 | sg00000197479 | pcdhb11-202 | 5 | 141199610 | 141202279 | + | mRNA | protein_coding |
| 219231 | enst00000471968 | sg00000171720 | hdac3-206 | 5 | 141629266 | 141634856 | - | lnc_RNA | retained_intron |
| 219539 | enst00000469550 | sg00000171720 | hdac3-205 | 5 | 141620876 | 141635164 | - | lnc_RNA | retained_intron |
| -220579 | enst00000625144 | sg00000279375 | ac244517.7-201 | 5 | 141191599 | 141194088 | - | lnc_RNA | lncrna |
| 221200 | enst00000495485 | sg00000171720 | hdac3-214 | 5 | 141628559 | 141636825 | - | lnc_RNA | retained_intron |
| 221208 | enst00000523088 | sg00000171720 | hdac3-216 | 5 | 141626233 | 141636833 | - | mRNA | protein_coding |
| 221213 | enst00000519474 | sg00000171720 | hdac3-215 | 5 | 141627892 | 141636838 | - | mRNA | nonsense_mediated_decay |
| 221218 | enst00000492506 | sg00000171720 | hdac3-213 | 5 | 141635909 | 141636843 | - | lnc_RNA | retained_intron |
| 221224 | enst00000305264 | sg00000171720 | hdac3-201 | 5 | 141620881 | 141636849 | - | mRNA | protein_coding |
| 221325 | enst00000444782 | sg00000164620 | rell2-202 | 5 | 141636950 | 141641063 | + | mRNA | protein_coding |
| 221325 | enst00000520674 | sg00000164620 | rell2-206 | 5 | 141636950 | 141641063 | + | lnc_RNA | processed_transcript |
| 221372 | enst00000297164 | sg00000164620 | rell2-201 | 5 | 141636997 | 141641064 | + | mRNA | protein_coding |
| 221380 | enst00000518025 | sg00000164620 | rell2-204 | 5 | 141637005 | 141641064 | + | lnc_RNA | processed_transcript |
| 221387 | enst00000521367 | sg00000164620 | rell2-207 | 5 | 141637012 | 141641018 | + | mRNA | protein_coding |
| 221812 | enst00000517794 | sg00000164620 | rell2-203 | 5 | 141637437 | 141639629 | + | lnc_RNA | processed_transcript |
| 221817 | enst00000518856 | sg00000164620 | rell2-205 | 5 | 141637442 | 141641053 | + | mRNA | protein_coding |
| -222314 | enst00000239446 | sg00000120324 | pcdhb10-201 | 5 | 141192353 | 141195647 | + | mRNA | protein_coding |
| 226996 | enst00000520747 | sg00000197948 | fchsd1-205 | 5 | 141639303 | 141642621 | - | lnc_RNA | retained_intron |
| 227079 | enst00000518160 | sg00000197948 | fchsd1-202 | 5 | 141641209 | 141642704 | - | lnc_RNA | processed_transcript |
| -227460 | enst00000624909 | sg00000177839 | pcdhb9-203 | 5 | 141187207 | 141188747 | + | mRNA | protein_coding |
| -227506 | enst00000316105 | sg00000177839 | pcdhb9-201 | 5 | 141187161 | 141191541 | + | mRNA | protein_coding |
| -227540 | enst00000623266 | sg00000177839 | pcdhb9-202 | 5 | 141187127 | 141188808 | + | lnc_RNA | processed_transcript |
| -230206 | enst00000624089 | sg00000278936 | ac244517.4-202 | 5 | 141183732 | 141184461 | - | lnc_RNA | lncrna |
| 230739 | enst00000518499 | sg00000197948 | fchsd1-203 | 5 | 141644630 | 141646364 | - | mRNA | protein_coding |
| 231858 | enst00000523856 | sg00000197948 | fchsd1-210 | 5 | 141639308 | 141647483 | - | lnc_RNA | processed_transcript |
| 231904 | enst00000522763 | sg00000197948 | fchsd1-208 | 5 | 141646508 | 141647529 | - | lnc_RNA | processed_transcript |
| 232206 | enst00000522386 | sg00000197948 | fchsd1-207 | 5 | 141646672 | 141647831 | - | lnc_RNA | processed_transcript |
| -232238 | enst00000623884 | sg00000279068 | ac244517.6-202 | 5 | 141182429 | 141187418 | + | lnc_RNA | lncrna |
| -232258 | enst00000623407 | sg00000279068 | ac244517.6-201 | 5 | 141182409 | 141188582 | + | lnc_RNA | lncrna |
| -232264 | enst00000625044 | sg00000272674 | pcdhb16-202 | 5 | 141182403 | 141184269 | + | mRNA | protein_coding |
| -233268 | enst00000609684 | sg00000272674 | pcdhb16-201 | 5 | 141181399 | 141186399 | + | mRNA | protein_coding |
| 235492 | enst00000522126 | sg00000197948 | fchsd1-206 | 5 | 141640982 | 141651117 | - | mRNA | nonsense_mediated_decay |
| 235751 | enst00000522783 | sg00000197948 | fchsd1-209 | 5 | 141640987 | 141651376 | - | mRNA | protein_coding |
| 235762 | enst00000519800 | sg00000197948 | fchsd1-204 | 5 | 141647884 | 141651387 | - | mRNA | protein_coding |
| 235793 | enst00000435817 | sg00000197948 | fchsd1-201 | 5 | 141639302 | 141651418 | - | mRNA | protein_coding |
| -236818 | enst00000623995 | sg00000279472 | ac244517.8-201 | 5 | 141177849 | 141182369 | + | lnc_RNA | lncrna |
| -236877 | enst00000239444 | sg00000120322 | pcdhb8-201 | 5 | 141177790 | 141180539 | + | mRNA | protein_coding |
| -240276 | enst00000624802 | sg00000272154 | ac244517.2-205 | 5 | 141100705 | 141174391 | - | lnc_RNA | lncrna |
| -241145 | enst00000625128 | sg00000272154 | ac244517.2-204 | 5 | 141100459 | 141173522 | - | lnc_RNA | lncrna |
| -242023 | enst00000231137 | sg00000113212 | pcdhb7-201 | 5 | 141172644 | 141176383 | + | mRNA | protein_coding |
| -246436 | enst00000623581 | sg00000280336 | ac244517.12-201 | 5 | 141168231 | 141168893 | + | lnc_RNA | lncrna |
| 251119 | enst00000512390 | sg00000120318 | arap3-204 | 5 | 141653408 | 141666744 | - | lnc_RNA | processed_transcript |
| 257535 | enst00000513878 | sg00000120318 | arap3-205 | 5 | 141653791 | 141673160 | - | mRNA | protein_coding |
| 257762 | enst00000524066 | sg00000120318 | arap3-206 | 5 | 141672768 | 141673387 | - | lnc_RNA | processed_transcript |
| -258671 | enst00000623466 | sg00000255622 | pcdhb17p-202 | 5 | 141155996 | 141159061 | + | lnc_RNA | processed_transcript |
| -258671 | enst00000539533 | sg00000255622 | pcdhb17p-201 | 5 | 141155996 | 141158388 | + | pseudogenic_transcript | transcribed_unprocessed_pseudogene |
| -262297 | enst00000625066 | sg00000272154 | ac244517.2-203 | 5 | 141100330 | 141152370 | - | lnc_RNA | lncrna |
| -264565 | enst00000622991 | sg00000113211 | pcdhb6-202 | 5 | 141150102 | 141152914 | + | mRNA | protein_coding |
| -264645 | enst00000231136 | sg00000113211 | pcdhb6-201 | 5 | 141150022 | 141153287 | + | mRNA | protein_coding |
| 264880 | enst00000626478 | sg00000120318 | arap3-207 | 5 | 141653403 | 141680505 | - | mRNA | protein_coding |
| 265206 | enst00000504448 | sg00000120318 | arap3-202 | 5 | 141672267 | 141680831 | - | mRNA | protein_coding |
| 266578 | enst00000508305 | sg00000120318 | arap3-203 | 5 | 141653401 | 141682203 | - | mRNA | protein_coding |
| 266605 | enst00000239440 | sg00000120318 | arap3-201 | 5 | 141653402 | 141682230 | - | mRNA | protein_coding |
| -279438 | enst00000623915 | sg00000113209 | pcdhb5-202 | 5 | 141135229 | 141137449 | + | mRNA | protein_coding |
| -279461 | enst00000231134 | sg00000113209 | pcdhb5-201 | 5 | 141135206 | 141138615 | + | mRNA | protein_coding |
| -292849 | enst00000194152 | sg00000081818 | pcdhb4-201 | 5 | 141121818 | 141125623 | + | mRNA | protein_coding |
| -292849 | enst00000623478 | sg00000081818 | pcdhb4-202 | 5 | 141121818 | 141124147 | + | lnc_RNA | processed_transcript |
| -295987 | enst00000606030 | sg00000272108 | ac244517.1-201 | 5 | 141118680 | 141120765 | + | lnc_RNA | lncrna |
| -311980 | enst00000624513 | sg00000113205 | pcdhb3-202 | 5 | 141102687 | 141102983 | + | mRNA | protein_coding |
| -312417 | enst00000660221 | sg00000272154 | ac244517.2-202 | 5 | 141100247 | 141102250 | - | lnc_RNA | lncrna |
| -312454 | enst00000607216 | sg00000272154 | ac244517.2-201 | 5 | 141100242 | 141102213 | - | lnc_RNA | lncrna |
| -314194 | enst00000231130 | sg00000113205 | pcdhb3-201 | 5 | 141100473 | 141103827 | + | mRNA | protein_coding |
| -317833 | enst00000624994 | sg00000112852 | pcdhb2-204 | 5 | 141096834 | 141097130 | + | mRNA | protein_coding |
| -318265 | enst00000623741 | sg00000279047 | ac244517.5-202 | 5 | 141050965 | 141096402 | - | lnc_RNA | lncrna |
| -318310 | enst00000623615 | sg00000279047 | ac244517.5-206 | 5 | 141095582 | 141096357 | - | lnc_RNA | lncrna |
| -318333 | enst00000656356 | sg00000279047 | ac244517.5-205 | 5 | 141094355 | 141096334 | - | lnc_RNA | lncrna |
| -320040 | enst00000625033 | sg00000112852 | pcdhb2-205 | 5 | 141094627 | 141095660 | + | mRNA | protein_coding |
| -320045 | enst00000624874 | sg00000112852 | pcdhb2-203 | 5 | 141094622 | 141095581 | + | mRNA | protein_coding |
| -320052 | enst00000194155 | sg00000112852 | pcdhb2-201 | 5 | 141094615 | 141098703 | + | mRNA | protein_coding |
| -320061 | enst00000622947 | sg00000112852 | pcdhb2-202 | 5 | 141094606 | 141097264 | + | mRNA | protein_coding |
| -336591 | enst00000624102 | sg00000279558 | ac244517.9-201 | 5 | 141078076 | 141084481 | + | lnc_RNA | lncrna |
| -336636 | enst00000623109 | sg00000279047 | ac244517.5-204 | 5 | 141057778 | 141078031 | - | lnc_RNA | lncrna |
| -336643 | enst00000624778 | sg00000279047 | ac244517.5-203 | 5 | 141051003 | 141078024 | - | lnc_RNA | lncrna |
| -352134 | enst00000624139 | sg00000279047 | ac244517.5-201 | 5 | 141046260 | 141062533 | - | lnc_RNA | lncrna |
| 359562 | enst00000653358 | sg00000286736 | ac005753.2-201 | 5 | 141718711 | 141775187 | - | lnc_RNA | lncrna |
| -363532 | enst00000306549 | sg00000171815 | pcdhb1-201 | 5 | 141051135 | 141059344 | + | mRNA | protein_coding |
| 409781 | enst00000654432 | sg00000287527 | ac005753.3-202 | 5 | 141822122 | 141825406 | - | lnc_RNA | lncrna |
| 409863 | enst00000663050 | sg00000287527 | ac005753.3-201 | 5 | 141822076 | 141825488 | - | lnc_RNA | lncrna |
| 410700 | enst00000623837 | sg00000278925 | ac005753.1-201 | 5 | 141825708 | 141826325 | - | lnc_RNA | lncrna |
| -425754 | enst00000613766 | sg00000243232 | pcdhac2-202 | 5 | 140988913 | 141010100 | + | lnc_RNA | processed_transcript |
| -426410 | enst00000673410 | sg00000243232 | pcdhac2-205 | 5 | 140988257 | 141012038 | + | lnc_RNA | processed_transcript |
| -432322 | enst00000617566 | sg00000243232 | pcdhac2-204 | 5 | 140982345 | 141009691 | + | lnc_RNA | retained_intron |
| -448177 | enst00000625092 | sg00000279028 | ac010223.1-201 | 5 | 140966212 | 140966490 | - | lnc_RNA | lncrna |
| -448191 | enst00000289269 | sg00000243232 | pcdhac2-201 | 5 | 140966476 | 141012347 | + | mRNA | protein_coding |
| -448197 | enst00000615316 | sg00000243232 | pcdhac2-203 | 5 | 140966470 | 140969480 | + | mRNA | protein_coding |
| 450577 | enst00000511044 | sg00000156453 | pcdh1-206 | 5 | 141862885 | 141866202 | - | lnc_RNA | processed_transcript |
| 452950 | enst00000515351 | sg00000156453 | pcdh1-208 | 5 | 141863013 | 141868575 | - | mRNA | protein_coding |
| 453257 | enst00000505937 | sg00000156453 | pcdh1-205 | 5 | 141865062 | 141868882 | - | mRNA | nonsense_mediated_decay |
| 453964 | enst00000357517 | sg00000156453 | pcdh1-202 | 5 | 141863057 | 141869589 | - | lnc_RNA | processed_transcript |
| 462784 | enst00000503492 | sg00000156453 | pcdh1-204 | 5 | 141853373 | 141878409 | - | mRNA | protein_coding |
| 462785 | enst00000287008 | sg00000156453 | pcdh1-201 | 5 | 141853111 | 141878410 | - | mRNA | protein_coding |
| 462785 | enst00000394536 | sg00000156453 | pcdh1-203 | 5 | 141862652 | 141878410 | - | mRNA | protein_coding |
| 463621 | enst00000514773 | sg00000156453 | pcdh1-207 | 5 | 141868954 | 141879246 | - | mRNA | protein_coding |
| 467190 | enst00000659661 | sg00000287726 | ac005740.5-201 | 5 | 141882815 | 141894793 | + | lnc_RNA | lncrna |
| 467865 | enst00000654307 | sg00000287726 | ac005740.5-202 | 5 | 141883490 | 141907939 | + | lnc_RNA | lncrna |
| 481064 | enst00000515639 | sg00000226040 | ac005740.1-201 | 5 | 141896168 | 141896689 | - | pseudogenic_transcript | processed_pseudogene |
| -487774 | enst00000253807 | sg00000248383 | pcdhac1-201 | 5 | 140926893 | 141012344 | + | mRNA | protein_coding |
| -488298 | enst00000409700 | sg00000248383 | pcdhac1-202 | 5 | 140926369 | 140930445 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc