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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #181 | 5 | 3606229 | 3607148 | 919 | 3 | 32 | 1.76955e-14 | 9.72272e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| -6041 | enst00000559410 | sg00000259603 | ac016595.1-201 | 5 | 3596211 | 3600188 | - | lnc_RNA | lncrna |
| -10397 | enst00000302006 | sg00000170549 | irx1-201 | 5 | 3595832 | 3601403 | + | mRNA | protein_coding |
| -70135 | enst00000505443 | sg00000248118 | linc01019-201 | 5 | 3417152 | 3536094 | - | lnc_RNA | lncrna |
| -74434 | enst00000662836 | sg00000248118 | linc01019-202 | 5 | 3357264 | 3531795 | - | lnc_RNA | lncrna |
| -102225 | enst00000508823 | sg00000250716 | linc01017-201 | 5 | 3496229 | 3504004 | - | lnc_RNA | lncrna |
| -153413 | enst00000512521 | sg00000249830 | linc02162-201 | 5 | 3452816 | 3461660 | + | lnc_RNA | lncrna |
| 406501 | enst00000513859 | sg00000248962 | ac025773.1-201 | 5 | 4012708 | 4013649 | - | lnc_RNA | lncrna |
| -428366 | enst00000652864 | sg00000249808 | ac091832.1-202 | 5 | 3177863 | 3181487 | + | lnc_RNA | lncrna |
| -428394 | enst00000505396 | sg00000249808 | ac091832.1-201 | 5 | 3177835 | 3181232 | + | lnc_RNA | lncrna |
| 434616 | enst00000506305 | sg00000249994 | ac025187.1-201 | 5 | 4033713 | 4041764 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc