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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #178 | 10 | 2935661 | 2936694 | 1033 | 3 | 35 | 1.65198e-14 | 9.23849e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000419388 | sg00000231743 | ac026396.1-201 | 10 | 2936021 | 2936441 | + | pseudogenic_transcript | processed_pseudogene |
| 73282 | enst00000439575 | sg00000234182 | al731533.1-201 | 10 | 3009976 | 3013111 | + | lnc_RNA | lncrna |
| 110389 | enst00000658425 | sg00000287560 | al731533.3-201 | 10 | 3042535 | 3047083 | - | lnc_RNA | lncrna |
| 129307 | enst00000607898 | sg00000273001 | al731533.2-201 | 10 | 3065424 | 3066001 | - | lnc_RNA | lncrna |
| 129639 | enst00000607886 | sg00000067057 | pfkp-212 | 10 | 3066333 | 3101554 | + | mRNA | protein_coding |
| 130854 | enst00000381125 | sg00000067057 | pfkp-203 | 10 | 3067548 | 3136802 | + | mRNA | protein_coding |
| 130978 | enst00000495715 | sg00000067057 | pfkp-211 | 10 | 3067672 | 3069380 | + | lnc_RNA | processed_transcript |
| 131933 | enst00000381075 | sg00000067057 | pfkp-202 | 10 | 3068627 | 3136793 | + | mRNA | protein_coding |
| 132539 | enst00000421751 | sg00000067057 | pfkp-207 | 10 | 3069233 | 3103937 | + | lnc_RNA | processed_transcript |
| 133551 | enst00000407806 | sg00000067057 | pfkp-204 | 10 | 3070245 | 3105473 | + | mRNA | protein_coding |
| 168030 | enst00000415005 | sg00000067057 | pfkp-206 | 10 | 3104724 | 3137718 | + | mRNA | protein_coding |
| 168053 | enst00000468050 | sg00000067057 | pfkp-210 | 10 | 3104747 | 3109394 | + | mRNA | protein_coding |
| 168185 | enst00000460445 | sg00000067057 | pfkp-209 | 10 | 3104879 | 3107233 | + | lnc_RNA | processed_transcript |
| 176764 | enst00000413079 | sg00000067057 | pfkp-205 | 10 | 3113458 | 3129941 | + | mRNA | protein_coding |
| 192313 | enst00000381072 | sg00000067057 | pfkp-201 | 10 | 3129007 | 3136793 | + | lnc_RNA | retained_intron |
| 196541 | enst00000433193 | sg00000067057 | pfkp-208 | 10 | 3133235 | 3137715 | + | mRNA | protein_coding |
| 197872 | enst00000441377 | sg00000278419 | al451164.2-201 | 10 | 3134566 | 3145166 | + | lnc_RNA | lncrna |
| 201921 | enst00000490510 | sg00000107959 | pitrm1-211 | 10 | 3137728 | 3138615 | - | lnc_RNA | processed_transcript |
| 204938 | enst00000598280 | sg00000237399 | pitrm1-as1-202 | 10 | 3141632 | 3167972 | + | lnc_RNA | lncrna |
| 204938 | enst00000601046 | sg00000237399 | pitrm1-as1-203 | 10 | 3141632 | 3164249 | + | lnc_RNA | lncrna |
| 204978 | enst00000430356 | sg00000237399 | pitrm1-as1-201 | 10 | 3141672 | 3148622 | + | lnc_RNA | lncrna |
| -207394 | enst00000671591 | sg00000286858 | al355361.1-201 | 10 | 2724819 | 2728267 | - | lnc_RNA | lncrna |
| 207672 | enst00000455371 | sg00000107959 | pitrm1-208 | 10 | 3138691 | 3144366 | - | mRNA | protein_coding |
| 209015 | enst00000424714 | sg00000107959 | pitrm1-204 | 10 | 3143483 | 3145709 | - | mRNA | protein_coding |
| 211361 | enst00000451454 | sg00000107959 | pitrm1-207 | 10 | 3141508 | 3148055 | - | mRNA | protein_coding |
| 212705 | enst00000464395 | sg00000107959 | pitrm1-209 | 10 | 3137728 | 3149399 | - | lnc_RNA | processed_transcript |
| 221393 | enst00000380994 | sg00000107959 | pitrm1-203 | 10 | 3137734 | 3158087 | - | mRNA | protein_coding |
| 222264 | enst00000430362 | sg00000107959 | pitrm1-205 | 10 | 3151176 | 3158958 | - | mRNA | protein_coding |
| 228640 | enst00000488065 | sg00000107959 | pitrm1-210 | 10 | 3163132 | 3165334 | - | lnc_RNA | processed_transcript |
| 236088 | enst00000224949 | sg00000107959 | pitrm1-201 | 10 | 3137728 | 3172782 | - | mRNA | protein_coding |
| 236147 | enst00000380989 | sg00000107959 | pitrm1-202 | 10 | 3137730 | 3172841 | - | mRNA | protein_coding |
| 236147 | enst00000451104 | sg00000107959 | pitrm1-206 | 10 | 3137730 | 3172841 | - | mRNA | protein_coding |
| 273972 | enst00000663204 | sg00000288566 | al451164.3-201 | 10 | 3200829 | 3210666 | - | lnc_RNA | lncrna |
| 287122 | enst00000445932 | sg00000236968 | al451164.1-201 | 10 | 3223816 | 3227407 | + | lnc_RNA | lncrna |
| 320890 | enst00000665182 | sg00000226762 | linc02668-204 | 10 | 3238117 | 3257584 | - | lnc_RNA | lncrna |
| 320890 | enst00000655354 | sg00000226762 | linc02668-202 | 10 | 3232288 | 3257584 | - | lnc_RNA | lncrna |
| 321238 | enst00000417149 | sg00000226762 | linc02668-201 | 10 | 3232388 | 3257932 | - | lnc_RNA | lncrna |
| 322203 | enst00000669318 | sg00000226762 | linc02668-205 | 10 | 3232264 | 3258897 | - | lnc_RNA | lncrna |
| 326652 | enst00000436340 | sg00000227338 | al139280.1-201 | 10 | 3263346 | 3267216 | + | lnc_RNA | lncrna |
| 340955 | enst00000662361 | sg00000226762 | linc02668-203 | 10 | 3270090 | 3277649 | - | lnc_RNA | lncrna |
| 359644 | enst00000657119 | sg00000287428 | al139280.2-201 | 10 | 3296338 | 3298137 | + | lnc_RNA | lncrna |
| -433461 | enst00000658961 | sg00000234170 | linc02645-205 | 10 | 2446253 | 2502200 | - | lnc_RNA | lncrna |
| -433476 | enst00000664302 | sg00000234170 | linc02645-209 | 10 | 2446256 | 2502185 | - | lnc_RNA | lncrna |
| -433476 | enst00000667195 | sg00000234170 | linc02645-213 | 10 | 2446462 | 2502185 | - | lnc_RNA | lncrna |
| -433484 | enst00000663504 | sg00000234170 | linc02645-208 | 10 | 2446637 | 2502177 | - | lnc_RNA | lncrna |
| -433484 | enst00000655634 | sg00000234170 | linc02645-204 | 10 | 2438831 | 2502177 | - | lnc_RNA | lncrna |
| -433484 | enst00000664791 | sg00000234170 | linc02645-210 | 10 | 2446252 | 2502177 | - | lnc_RNA | lncrna |
| -433489 | enst00000666064 | sg00000234170 | linc02645-212 | 10 | 2368561 | 2502172 | - | lnc_RNA | lncrna |
| -433489 | enst00000661232 | sg00000234170 | linc02645-206 | 10 | 2421990 | 2502172 | - | lnc_RNA | lncrna |
| -433721 | enst00000658050 | sg00000235281 | al713851.1-203 | 10 | 2501940 | 2538170 | + | lnc_RNA | lncrna |
| -433743 | enst00000441907 | sg00000234170 | linc02645-203 | 10 | 2446256 | 2501918 | - | lnc_RNA | lncrna |
| -433745 | enst00000668732 | sg00000234170 | linc02645-214 | 10 | 2446244 | 2501916 | - | lnc_RNA | lncrna |
| -433762 | enst00000665481 | sg00000235281 | al713851.1-205 | 10 | 2501899 | 2615653 | + | lnc_RNA | lncrna |
| -433785 | enst00000656797 | sg00000235281 | al713851.1-206 | 10 | 2501876 | 2618739 | + | lnc_RNA | lncrna |
| -433820 | enst00000414107 | sg00000234170 | linc02645-201 | 10 | 2446253 | 2501841 | - | lnc_RNA | lncrna |
| -433843 | enst00000665692 | sg00000234170 | linc02645-211 | 10 | 2499755 | 2501818 | - | lnc_RNA | lncrna |
| -433858 | enst00000437289 | sg00000235281 | al713851.1-202 | 10 | 2501803 | 2537625 | + | lnc_RNA | lncrna |
| -433878 | enst00000438753 | sg00000235281 | al713851.1-201 | 10 | 2501783 | 2567239 | + | lnc_RNA | lncrna |
| -433892 | enst00000662131 | sg00000234170 | linc02645-207 | 10 | 2446256 | 2501769 | - | lnc_RNA | lncrna |
| -434035 | enst00000656735 | sg00000235281 | al713851.1-207 | 10 | 2501626 | 2571055 | + | lnc_RNA | lncrna |
| -434061 | enst00000664280 | sg00000235281 | al713851.1-204 | 10 | 2501600 | 2567537 | + | lnc_RNA | lncrna |
| -435940 | enst00000431209 | sg00000237500 | al713851.2-201 | 10 | 2499721 | 2500570 | + | lnc_RNA | lncrna |
| 460811 | enst00000661754 | sg00000286610 | al356433.1-201 | 10 | 3397505 | 3400180 | + | lnc_RNA | lncrna |
| -488311 | enst00000439973 | sg00000234170 | linc02645-202 | 10 | 2446258 | 2447350 | - | lnc_RNA | lncrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc