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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #168 | 11 | 60950585 | 60952014 | 1429 | 3 | 39 | 7.54438e-15 | 4.466e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000541505 | sg00000110446 | slc15a3-207 | 11 | 60937084 | 60951646 | - | mRNA | nonsense_mediated_decay |
| 162 | enst00000227880 | sg00000110446 | slc15a3-201 | 11 | 60937084 | 60952176 | - | mRNA | protein_coding |
| 516 | enst00000538739 | sg00000110446 | slc15a3-205 | 11 | 60946534 | 60952530 | - | mRNA | protein_coding |
| -2766 | enst00000536491 | sg00000110446 | slc15a3-202 | 11 | 60941209 | 60947819 | - | mRNA | protein_coding |
| -3819 | enst00000540272 | sg00000110446 | slc15a3-206 | 11 | 60943506 | 60946766 | - | lnc_RNA | retained_intron |
| -6793 | enst00000537307 | sg00000110446 | slc15a3-204 | 11 | 60937161 | 60943792 | - | mRNA | protein_coding |
| -6966 | enst00000543406 | sg00000110446 | slc15a3-208 | 11 | 60937091 | 60943619 | - | lnc_RNA | retained_intron |
| -12453 | enst00000544101 | sg00000110446 | slc15a3-209 | 11 | 60937088 | 60938132 | - | lnc_RNA | retained_intron |
| -12601 | enst00000536784 | sg00000110446 | slc15a3-203 | 11 | 60937084 | 60937984 | - | mRNA | protein_coding |
| -15267 | enst00000535480 | sg00000006118 | tmem132a-204 | 11 | 60935318 | 60937159 | + | mRNA | protein_coding |
| -15942 | enst00000540112 | sg00000006118 | tmem132a-210 | 11 | 60934643 | 60937142 | + | mRNA | protein_coding |
| -16247 | enst00000538090 | sg00000006118 | tmem132a-209 | 11 | 60934338 | 60935415 | + | lnc_RNA | retained_intron |
| -16588 | enst00000536928 | sg00000006118 | tmem132a-206 | 11 | 60933997 | 60935347 | + | lnc_RNA | processed_transcript |
| -18830 | enst00000536409 | sg00000006118 | tmem132a-205 | 11 | 60931755 | 60934608 | + | mRNA | protein_coding |
| 19666 | enst00000313421 | sg00000013725 | cd6-201 | 11 | 60971680 | 61020377 | + | mRNA | protein_coding |
| 19722 | enst00000542254 | sg00000013725 | cd6-212 | 11 | 60971736 | 61007712 | + | mRNA | nonsense_mediated_decay |
| 19724 | enst00000545105 | sg00000013725 | cd6-213 | 11 | 60971738 | 61014011 | + | lnc_RNA | processed_transcript |
| 19732 | enst00000344931 | sg00000013725 | cd6-202 | 11 | 60971746 | 61020338 | + | mRNA | nonsense_mediated_decay |
| 19736 | enst00000545320 | sg00000013725 | cd6-214 | 11 | 60971750 | 60989392 | + | lnc_RNA | processed_transcript |
| 19852 | enst00000542157 | sg00000013725 | cd6-211 | 11 | 60971866 | 61013476 | + | mRNA | protein_coding |
| 19852 | enst00000433107 | sg00000013725 | cd6-205 | 11 | 60971866 | 61017843 | + | mRNA | protein_coding |
| 19852 | enst00000352009 | sg00000013725 | cd6-203 | 11 | 60971866 | 61019321 | + | mRNA | protein_coding |
| 19852 | enst00000452451 | sg00000013725 | cd6-206 | 11 | 60971866 | 61019321 | + | mRNA | protein_coding |
| -23517 | enst00000544098 | sg00000006118 | tmem132a-214 | 11 | 60927068 | 60934617 | + | lnc_RNA | retained_intron |
| -23536 | enst00000534983 | sg00000006118 | tmem132a-203 | 11 | 60927049 | 60934607 | + | lnc_RNA | retained_intron |
| -24881 | enst00000537110 | sg00000006118 | tmem132a-208 | 11 | 60925704 | 60926643 | + | lnc_RNA | processed_transcript |
| -25188 | enst00000543907 | sg00000256196 | ap003721.1-201 | 11 | 60916339 | 60925397 | - | lnc_RNA | lncrna |
| -26087 | enst00000540276 | sg00000006118 | tmem132a-211 | 11 | 60924498 | 60927858 | + | lnc_RNA | processed_transcript |
| -26093 | enst00000543732 | sg00000006118 | tmem132a-212 | 11 | 60924492 | 60925707 | + | lnc_RNA | processed_transcript |
| -26104 | enst00000005286 | sg00000006118 | tmem132a-201 | 11 | 60924481 | 60937159 | + | mRNA | protein_coding |
| -26109 | enst00000453848 | sg00000006118 | tmem132a-202 | 11 | 60924476 | 60937023 | + | mRNA | protein_coding |
| -26115 | enst00000544065 | sg00000006118 | tmem132a-213 | 11 | 60924470 | 60930659 | + | mRNA | protein_coding |
| -26122 | enst00000537065 | sg00000006118 | tmem132a-207 | 11 | 60924463 | 60926631 | + | lnc_RNA | processed_transcript |
| -27967 | enst00000540280 | sg00000110108 | tmem109-203 | 11 | 60922618 | 60923443 | + | lnc_RNA | processed_transcript |
| -30907 | enst00000536171 | sg00000110108 | tmem109-202 | 11 | 60919678 | 60923376 | + | mRNA | protein_coding |
| 33153 | enst00000384424 | sg00000207153 | rnu6-933p-201 | 11 | 60985061 | 60985167 | - | snRNA | snrna |
| -36427 | enst00000227525 | sg00000110108 | tmem109-201 | 11 | 60914158 | 60923443 | + | mRNA | protein_coding |
| -36533 | enst00000543275 | sg00000256944 | ap003721.3-201 | 11 | 60913166 | 60914052 | - | lnc_RNA | lncrna |
| -43796 | enst00000544421 | sg00000257052 | ap003721.4-201 | 11 | 60906789 | 60909742 | + | lnc_RNA | lncrna |
| -44000 | enst00000227524 | sg00000110107 | prpf19-201 | 11 | 60890547 | 60906585 | - | mRNA | protein_coding |
| -44016 | enst00000541371 | sg00000110107 | prpf19-206 | 11 | 60898541 | 60906569 | - | mRNA | protein_coding |
| -44044 | enst00000546152 | sg00000110107 | prpf19-207 | 11 | 60901499 | 60906541 | - | mRNA | protein_coding |
| -48171 | enst00000540473 | sg00000110107 | prpf19-205 | 11 | 60890736 | 60902414 | - | mRNA | protein_coding |
| -51370 | enst00000539960 | sg00000110107 | prpf19-204 | 11 | 60897550 | 60899215 | - | lnc_RNA | retained_intron |
| -51654 | enst00000535326 | sg00000110107 | prpf19-202 | 11 | 60890747 | 60898931 | - | mRNA | protein_coding |
| -52116 | enst00000539180 | sg00000110107 | prpf19-203 | 11 | 60897880 | 60898469 | - | lnc_RNA | retained_intron |
| 52397 | enst00000538288 | sg00000013725 | cd6-208 | 11 | 61004411 | 61007713 | + | lnc_RNA | processed_transcript |
| 56337 | enst00000541964 | sg00000013725 | cd6-210 | 11 | 61008351 | 61009636 | + | lnc_RNA | retained_intron |
| 56520 | enst00000538611 | sg00000013725 | cd6-209 | 11 | 61008534 | 61013955 | + | mRNA | protein_coding |
| 63407 | enst00000419282 | sg00000013725 | cd6-204 | 11 | 61015421 | 61017549 | + | lnc_RNA | retained_intron |
| 64889 | enst00000505761 | sg00000013725 | cd6-207 | 11 | 61016903 | 61020374 | + | lnc_RNA | retained_intron |
| -77460 | enst00000543020 | sg00000149506 | zp1-205 | 11 | 60873125 | 60874971 | + | lnc_RNA | retained_intron |
| -79744 | enst00000542971 | sg00000149506 | zp1-204 | 11 | 60870841 | 60873281 | + | lnc_RNA | retained_intron |
| -80073 | enst00000537203 | sg00000149506 | zp1-202 | 11 | 60870512 | 60875693 | + | lnc_RNA | retained_intron |
| -81428 | enst00000540908 | sg00000149506 | zp1-203 | 11 | 60869157 | 60871120 | + | mRNA | nonsense_mediated_decay |
| -83023 | enst00000278853 | sg00000149506 | zp1-201 | 11 | 60867562 | 60875693 | + | mRNA | protein_coding |
| -94635 | enst00000332539 | sg00000183134 | ptgdr2-201 | 11 | 60850933 | 60855950 | - | mRNA | protein_coding |
| -99504 | enst00000538705 | sg00000256813 | ap000777.3-201 | 11 | 60841806 | 60851081 | - | lnc_RNA | lncrna |
| -103112 | enst00000545580 | sg00000110104 | ccdc86-203 | 11 | 60847473 | 60850546 | + | mRNA | protein_coding |
| 103378 | enst00000664141 | sg00000256733 | ap003721.2-202 | 11 | 61055392 | 61067597 | + | lnc_RNA | lncrna |
| 103402 | enst00000659437 | sg00000256733 | ap003721.2-203 | 11 | 61055416 | 61067597 | + | lnc_RNA | lncrna |
| 103723 | enst00000536495 | sg00000256733 | ap003721.2-201 | 11 | 61055737 | 61067535 | + | lnc_RNA | lncrna |
| -104152 | enst00000649393 | sg00000110104 | ccdc86-204 | 11 | 60846433 | 60851076 | + | lnc_RNA | retained_intron |
| -107620 | enst00000539897 | sg00000255959 | ap000777.2-201 | 11 | 60835996 | 60842965 | - | lnc_RNA | lncrna |
| -108440 | enst00000535217 | sg00000110104 | ccdc86-202 | 11 | 60842145 | 60851046 | + | mRNA | nonsense_mediated_decay |
| -108472 | enst00000227520 | sg00000110104 | ccdc86-201 | 11 | 60842113 | 60851081 | + | mRNA | protein_coding |
| -128846 | enst00000541495 | sg00000255845 | ap000777.1-201 | 11 | 60813932 | 60821739 | - | lnc_RNA | lncrna |
| 150475 | enst00000347785 | sg00000110448 | cd5-201 | 11 | 61102489 | 61127852 | + | mRNA | protein_coding |
| 150495 | enst00000544014 | sg00000110448 | cd5-202 | 11 | 61102509 | 61119359 | + | mRNA | protein_coding |
| -165252 | enst00000308287 | sg00000172689 | ms4a10-201 | 11 | 60785333 | 60801305 | + | mRNA | protein_coding |
| 193450 | enst00000624057 | sg00000279549 | ap000437.1-201 | 11 | 61143380 | 61145464 | - | unconfirmed_transcript | tec |
| -193581 | enst00000429322 | sg00000166961 | ms4a15-203 | 11 | 60757004 | 60776732 | + | mRNA | nonsense_mediated_decay |
| -193582 | enst00000337911 | sg00000166961 | ms4a15-201 | 11 | 60757003 | 60776731 | + | mRNA | protein_coding |
| -193632 | enst00000528170 | sg00000166961 | ms4a15-204 | 11 | 60756953 | 60775799 | + | mRNA | protein_coding |
| -193718 | enst00000405633 | sg00000166961 | ms4a15-202 | 11 | 60756867 | 60776733 | + | mRNA | protein_coding |
| 209122 | enst00000538036 | sg00000167987 | vps37c-204 | 11 | 61132444 | 61161136 | - | mRNA | protein_coding |
| 209412 | enst00000301765 | sg00000167987 | vps37c-201 | 11 | 61130257 | 61161426 | - | mRNA | protein_coding |
| 209439 | enst00000536000 | sg00000167987 | vps37c-203 | 11 | 61132757 | 61161453 | - | lnc_RNA | retained_intron |
| 209601 | enst00000535818 | sg00000167987 | vps37c-202 | 11 | 61138196 | 61161615 | - | lnc_RNA | retained_intron |
| -221269 | enst00000398983 | sg00000214782 | ms4a18-201 | 11 | 60729316 | 60743766 | + | mRNA | protein_coding |
| -221281 | enst00000529108 | sg00000214782 | ms4a18-202 | 11 | 60729304 | 60744212 | + | mRNA | protein_coding |
| -249669 | enst00000525458 | sg00000166959 | ms4a8-203 | 11 | 60700916 | 60712027 | + | mRNA | protein_coding |
| -250830 | enst00000534316 | sg00000166959 | ms4a8-209 | 11 | 60699755 | 60701527 | + | lnc_RNA | retained_intron |
| -250838 | enst00000532816 | sg00000166959 | ms4a8-205 | 11 | 60699747 | 60703486 | + | mRNA | nonsense_mediated_decay |
| -250882 | enst00000529752 | sg00000166959 | ms4a8-204 | 11 | 60699703 | 60715386 | + | mRNA | protein_coding |
| -250891 | enst00000450141 | sg00000166959 | ms4a8-202 | 11 | 60699694 | 60708863 | + | lnc_RNA | retained_intron |
| -250928 | enst00000533354 | sg00000166959 | ms4a8-207 | 11 | 60699657 | 60709065 | + | lnc_RNA | retained_intron |
| -250973 | enst00000300226 | sg00000166959 | ms4a8-201 | 11 | 60699612 | 60715807 | + | mRNA | protein_coding |
| -250999 | enst00000532953 | sg00000166959 | ms4a8-206 | 11 | 60699586 | 60709219 | + | lnc_RNA | retained_intron |
| -251000 | enst00000533691 | sg00000166959 | ms4a8-208 | 11 | 60699585 | 60709206 | + | lnc_RNA | retained_intron |
| 251293 | enst00000535551 | sg00000229859 | pga3-202 | 11 | 61203307 | 61207864 | + | lnc_RNA | retained_intron |
| 251501 | enst00000537954 | sg00000229859 | pga3-203 | 11 | 61203515 | 61204739 | + | lnc_RNA | retained_intron |
| 251501 | enst00000539649 | sg00000229859 | pga3-205 | 11 | 61203515 | 61206816 | + | lnc_RNA | retained_intron |
| 251501 | enst00000325558 | sg00000229859 | pga3-201 | 11 | 61203515 | 61213098 | + | mRNA | protein_coding |
| 253666 | enst00000543505 | sg00000229859 | pga3-208 | 11 | 61205680 | 61211434 | + | mRNA | protein_coding |
| 255913 | enst00000541699 | sg00000229859 | pga3-206 | 11 | 61207927 | 61211435 | + | lnc_RNA | retained_intron |
| 257534 | enst00000543125 | sg00000229859 | pga3-207 | 11 | 61209548 | 61212865 | + | mRNA | protein_coding |
| 258740 | enst00000538258 | sg00000229859 | pga3-204 | 11 | 61210754 | 61212839 | + | mRNA | protein_coding |
| 270202 | enst00000378149 | sg00000229183 | pga4-201 | 11 | 61222216 | 61231927 | + | mRNA | protein_coding |
| 270337 | enst00000543193 | sg00000229183 | pga4-205 | 11 | 61222351 | 61223413 | + | lnc_RNA | retained_intron |
| 270337 | enst00000541743 | sg00000229183 | pga4-204 | 11 | 61222351 | 61225645 | + | lnc_RNA | retained_intron |
| 270337 | enst00000545726 | sg00000229183 | pga4-207 | 11 | 61222351 | 61226693 | + | lnc_RNA | retained_intron |
| 275096 | enst00000539581 | sg00000229183 | pga4-203 | 11 | 61227110 | 61231452 | + | lnc_RNA | retained_intron |
| 275154 | enst00000537594 | sg00000256220 | ap003037.1-201 | 11 | 61227168 | 61248533 | + | lnc_RNA | lncrna |
| 276363 | enst00000624544 | sg00000229183 | pga4-208 | 11 | 61228377 | 61231694 | + | unconfirmed_transcript | tec |
| 276363 | enst00000537932 | sg00000229183 | pga4-202 | 11 | 61228377 | 61231566 | + | mRNA | protein_coding |
| 277569 | enst00000544899 | sg00000229183 | pga4-206 | 11 | 61229583 | 61231668 | + | mRNA | protein_coding |
| 289028 | enst00000312403 | sg00000256713 | pga5-201 | 11 | 61241042 | 61251448 | + | mRNA | protein_coding |
| 289163 | enst00000545109 | sg00000256713 | pga5-206 | 11 | 61241177 | 61242254 | + | lnc_RNA | retained_intron |
| 289163 | enst00000536269 | sg00000256713 | pga5-204 | 11 | 61241177 | 61244471 | + | lnc_RNA | retained_intron |
| 289832 | enst00000535568 | sg00000256713 | pga5-203 | 11 | 61241846 | 61245519 | + | lnc_RNA | retained_intron |
| 296108 | enst00000451616 | sg00000256713 | pga5-202 | 11 | 61248122 | 61251444 | + | mRNA | protein_coding |
| -296846 | enst00000643933 | sg00000181995 | linc00301-205 | 11 | 60653739 | 60686983 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -296867 | enst00000532591 | sg00000181995 | linc00301-204 | 11 | 60653718 | 60687149 | + | lnc_RNA | processed_transcript |
| 297319 | enst00000541528 | sg00000256713 | pga5-205 | 11 | 61249333 | 61251418 | + | mRNA | protein_coding |
| -303304 | enst00000527161 | sg00000181995 | linc00301-203 | 11 | 60647281 | 60687149 | + | lnc_RNA | processed_transcript |
| 317403 | enst00000538438 | sg00000167992 | vwce-206 | 11 | 61259081 | 61269417 | - | lnc_RNA | retained_intron |
| 321305 | enst00000398808 | sg00000167992 | vwce-203 | 11 | 61271165 | 61273319 | - | lnc_RNA | retained_intron |
| 321792 | enst00000535710 | sg00000167992 | vwce-205 | 11 | 61258624 | 61273806 | - | mRNA | protein_coding |
| -334834 | enst00000320202 | sg00000181995 | linc00301-201 | 11 | 60615751 | 60687149 | + | lnc_RNA | processed_transcript |
| -334841 | enst00000646346 | sg00000181995 | linc00301-207 | 11 | 60615744 | 60687262 | + | lnc_RNA | processed_transcript |
| -334849 | enst00000644084 | sg00000181995 | linc00301-206 | 11 | 60615736 | 60687267 | + | lnc_RNA | processed_transcript |
| -334849 | enst00000412599 | sg00000181995 | linc00301-202 | 11 | 60615736 | 60687149 | + | lnc_RNA | processed_transcript |
| -334856 | enst00000646374 | sg00000181995 | linc00301-208 | 11 | 60615729 | 60687262 | + | lnc_RNA | processed_transcript |
| 339328 | enst00000613271 | sg00000167992 | vwce-208 | 11 | 61258289 | 61291342 | - | mRNA | protein_coding |
| 343012 | enst00000538579 | sg00000167992 | vwce-207 | 11 | 61286263 | 61295026 | - | lnc_RNA | retained_intron |
| 343077 | enst00000301770 | sg00000167992 | vwce-201 | 11 | 61258286 | 61295091 | - | mRNA | nonsense_mediated_decay |
| 343081 | enst00000535599 | sg00000167992 | vwce-204 | 11 | 61282498 | 61295095 | - | mRNA | nonsense_mediated_decay |
| 343302 | enst00000335613 | sg00000167992 | vwce-202 | 11 | 61258286 | 61295316 | - | mRNA | protein_coding |
| 350537 | enst00000545894 | sg00000167986 | ddb1-224 | 11 | 61299681 | 61302551 | - | lnc_RNA | retained_intron |
| 350900 | enst00000451943 | sg00000167986 | ddb1-203 | 11 | 61299556 | 61302914 | - | lnc_RNA | retained_intron |
| 351343 | enst00000538470 | sg00000167986 | ddb1-212 | 11 | 61300071 | 61303357 | - | lnc_RNA | retained_intron |
| 359335 | enst00000539332 | sg00000167986 | ddb1-213 | 11 | 61302581 | 61311349 | - | lnc_RNA | retained_intron |
| 363736 | enst00000414411 | sg00000167986 | ddb1-202 | 11 | 61313673 | 61315750 | - | lnc_RNA | retained_intron |
| 364271 | enst00000535147 | sg00000167986 | ddb1-204 | 11 | 61310296 | 61316285 | - | lnc_RNA | retained_intron |
| 364555 | enst00000538280 | sg00000167986 | ddb1-211 | 11 | 61314338 | 61316569 | - | lnc_RNA | processed_transcript |
| 370150 | enst00000537877 | sg00000167986 | ddb1-209 | 11 | 61313538 | 61322164 | - | lnc_RNA | retained_intron |
| 370944 | enst00000535967 | sg00000167986 | ddb1-207 | 11 | 61313860 | 61322958 | - | lnc_RNA | retained_intron |
| 371872 | enst00000539739 | sg00000167986 | ddb1-216 | 11 | 61314047 | 61323886 | - | lnc_RNA | retained_intron |
| 372252 | enst00000540784 | sg00000167986 | ddb1-218 | 11 | 61314048 | 61324266 | - | lnc_RNA | retained_intron |
| -372729 | enst00000637534 | sg00000283601 | ap003399.1-201 | 11 | 60577856 | 60608418 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 374215 | enst00000541513 | sg00000167986 | ddb1-219 | 11 | 61322317 | 61326229 | - | lnc_RNA | retained_intron |
| 374883 | enst00000539712 | sg00000167986 | ddb1-215 | 11 | 61321255 | 61326897 | - | lnc_RNA | retained_intron |
| 374910 | enst00000535174 | sg00000167986 | ddb1-205 | 11 | 61316281 | 61326924 | - | lnc_RNA | retained_intron |
| 375537 | enst00000545930 | sg00000167986 | ddb1-225 | 11 | 61314453 | 61327551 | - | lnc_RNA | processed_transcript |
| 378195 | enst00000538129 | sg00000167986 | ddb1-210 | 11 | 61329362 | 61330209 | - | lnc_RNA | retained_intron |
| 380372 | enst00000535283 | sg00000167986 | ddb1-206 | 11 | 61329326 | 61332386 | - | mRNA | protein_coding |
| 380821 | enst00000539426 | sg00000167986 | ddb1-214 | 11 | 61326779 | 61332835 | - | mRNA | protein_coding |
| 381027 | enst00000537120 | sg00000167986 | ddb1-208 | 11 | 61323758 | 61333041 | - | lnc_RNA | retained_intron |
| 381039 | enst00000543658 | sg00000167986 | ddb1-223 | 11 | 61309809 | 61333053 | - | mRNA | protein_coding |
| 381052 | enst00000543162 | sg00000167986 | ddb1-221 | 11 | 61324084 | 61333066 | - | lnc_RNA | processed_transcript |
| 381091 | enst00000301764 | sg00000167986 | ddb1-201 | 11 | 61299451 | 61333105 | - | mRNA | protein_coding |
| 381196 | enst00000394900 | sg00000149476 | tkfc-201 | 11 | 61333210 | 61349242 | + | mRNA | protein_coding |
| 381206 | enst00000531820 | sg00000149476 | tkfc-215 | 11 | 61333220 | 61333935 | + | lnc_RNA | retained_intron |
| 381207 | enst00000530456 | sg00000149476 | tkfc-214 | 11 | 61333221 | 61339145 | + | lnc_RNA | processed_transcript |
| 381208 | enst00000532173 | sg00000149476 | tkfc-216 | 11 | 61333222 | 61339435 | + | mRNA | protein_coding |
| 381210 | enst00000542337 | sg00000167986 | ddb1-220 | 11 | 61329474 | 61333224 | - | mRNA | protein_coding |
| 381217 | enst00000530057 | sg00000149476 | tkfc-212 | 11 | 61333231 | 61338102 | + | lnc_RNA | processed_transcript |
| 381226 | enst00000525170 | sg00000149476 | tkfc-205 | 11 | 61333240 | 61338090 | + | lnc_RNA | processed_transcript |
| 381230 | enst00000529121 | sg00000149476 | tkfc-209 | 11 | 61333244 | 61338083 | + | lnc_RNA | retained_intron |
| 381258 | enst00000529620 | sg00000149476 | tkfc-211 | 11 | 61333272 | 61338035 | + | lnc_RNA | processed_transcript |
| 381266 | enst00000533393 | sg00000149476 | tkfc-217 | 11 | 61333280 | 61339123 | + | lnc_RNA | processed_transcript |
| 381761 | enst00000543627 | sg00000167986 | ddb1-222 | 11 | 61329957 | 61333775 | - | mRNA | protein_coding |
| 382328 | enst00000524968 | sg00000149476 | tkfc-204 | 11 | 61334342 | 61338108 | + | mRNA | protein_coding |
| 385927 | enst00000529479 | sg00000149476 | tkfc-210 | 11 | 61337941 | 61346503 | + | mRNA | protein_coding |
| 387104 | enst00000529092 | sg00000149476 | tkfc-208 | 11 | 61339118 | 61339526 | + | lnc_RNA | retained_intron |
| 389661 | enst00000533853 | sg00000149476 | tkfc-218 | 11 | 61341675 | 61342778 | + | lnc_RNA | retained_intron |
| 390309 | enst00000524953 | sg00000149476 | tkfc-203 | 11 | 61342323 | 61342993 | + | lnc_RNA | retained_intron |
| 390387 | enst00000534134 | sg00000149476 | tkfc-220 | 11 | 61342401 | 61343159 | + | lnc_RNA | retained_intron |
| 390582 | enst00000540166 | sg00000167986 | ddb1-217 | 11 | 61300051 | 61342596 | - | mRNA | nonsense_mediated_decay |
| 391196 | enst00000534370 | sg00000149476 | tkfc-221 | 11 | 61343210 | 61343966 | + | lnc_RNA | retained_intron |
| 391602 | enst00000528061 | sg00000149476 | tkfc-207 | 11 | 61343616 | 61345316 | + | lnc_RNA | retained_intron |
| 391907 | enst00000534084 | sg00000149476 | tkfc-219 | 11 | 61343921 | 61353295 | + | mRNA | protein_coding |
| 393300 | enst00000525366 | sg00000149476 | tkfc-206 | 11 | 61345314 | 61346890 | + | lnc_RNA | retained_intron |
| 393305 | enst00000524440 | sg00000149476 | tkfc-202 | 11 | 61345319 | 61345960 | + | lnc_RNA | retained_intron |
| 393342 | enst00000530329 | sg00000149476 | tkfc-213 | 11 | 61345356 | 61346190 | + | lnc_RNA | retained_intron |
| 399270 | enst00000536452 | sg00000162144 | cyb561a3-206 | 11 | 61348890 | 61351284 | - | lnc_RNA | retained_intron |
| 400230 | enst00000623765 | sg00000279246 | ap003108.3-201 | 11 | 61352244 | 61354477 | + | unconfirmed_transcript | tec |
| 402727 | enst00000540139 | sg00000162144 | cyb561a3-214 | 11 | 61351059 | 61354741 | - | mRNA | protein_coding |
| 404787 | enst00000539890 | sg00000162144 | cyb561a3-213 | 11 | 61350280 | 61356801 | - | mRNA | protein_coding |
| 404875 | enst00000535177 | sg00000162144 | cyb561a3-205 | 11 | 61353106 | 61356889 | - | lnc_RNA | retained_intron |
| 405265 | enst00000536915 | sg00000162144 | cyb561a3-208 | 11 | 61350126 | 61357279 | - | mRNA | protein_coding |
| 405333 | enst00000542361 | sg00000162144 | cyb561a3-217 | 11 | 61351097 | 61357347 | - | mRNA | protein_coding |
| 409250 | enst00000537364 | sg00000162144 | cyb561a3-209 | 11 | 61352986 | 61361264 | - | mRNA | protein_coding |
| 409826 | enst00000538263 | sg00000162144 | cyb561a3-211 | 11 | 61353855 | 61361840 | - | lnc_RNA | processed_transcript |
| 409835 | enst00000544118 | sg00000162144 | cyb561a3-219 | 11 | 61349841 | 61361849 | - | mRNA | protein_coding |
| 409839 | enst00000540755 | sg00000162144 | cyb561a3-216 | 11 | 61349657 | 61361853 | - | mRNA | nonsense_mediated_decay |
| 409862 | enst00000542411 | sg00000162144 | cyb561a3-218 | 11 | 61356411 | 61361876 | - | lnc_RNA | retained_intron |
| 409868 | enst00000545361 | sg00000162144 | cyb561a3-220 | 11 | 61356548 | 61361882 | - | mRNA | protein_coding |
| 409871 | enst00000539128 | sg00000162144 | cyb561a3-212 | 11 | 61353831 | 61361885 | - | mRNA | protein_coding |
| 409876 | enst00000546151 | sg00000162144 | cyb561a3-221 | 11 | 61349647 | 61361890 | - | mRNA | protein_coding |
| 409899 | enst00000447532 | sg00000162144 | cyb561a3-203 | 11 | 61348838 | 61361913 | - | mRNA | protein_coding |
| 409899 | enst00000540317 | sg00000162144 | cyb561a3-215 | 11 | 61348818 | 61361913 | - | lnc_RNA | processed_transcript |
| 410234 | enst00000535152 | sg00000162144 | cyb561a3-204 | 11 | 61356733 | 61362248 | - | lnc_RNA | processed_transcript |
| 410248 | enst00000537680 | sg00000162144 | cyb561a3-210 | 11 | 61356628 | 61362262 | - | mRNA | protein_coding |
| 410257 | enst00000536687 | sg00000162144 | cyb561a3-207 | 11 | 61356522 | 61362271 | - | lnc_RNA | processed_transcript |
| 410269 | enst00000426130 | sg00000162144 | cyb561a3-202 | 11 | 61348754 | 61362283 | - | mRNA | protein_coding |
| 410285 | enst00000294072 | sg00000162144 | cyb561a3-201 | 11 | 61348745 | 61362299 | - | mRNA | protein_coding |
| 410330 | enst00000534963 | sg00000149483 | tmem138-206 | 11 | 61362344 | 61366557 | + | lnc_RNA | retained_intron |
| 410347 | enst00000543594 | sg00000149483 | tmem138-210 | 11 | 61362361 | 61364802 | + | lnc_RNA | retained_intron |
| 410347 | enst00000542946 | sg00000149483 | tmem138-209 | 11 | 61362361 | 61368556 | + | mRNA | protein_coding |
| 410360 | enst00000278826 | sg00000149483 | tmem138-201 | 11 | 61362374 | 61369509 | + | mRNA | protein_coding |
| 410372 | enst00000540194 | sg00000149483 | tmem138-208 | 11 | 61362386 | 61367540 | + | lnc_RNA | processed_transcript |
| 410373 | enst00000507563 | sg00000149483 | tmem138-205 | 11 | 61362387 | 61368583 | + | lnc_RNA | retained_intron |
| 410655 | enst00000423772 | sg00000149483 | tmem138-203 | 11 | 61362669 | 61368769 | + | lnc_RNA | retained_intron |
| 412236 | enst00000545420 | sg00000149483 | tmem138-212 | 11 | 61364250 | 61368751 | + | lnc_RNA | processed_transcript |
| 412236 | enst00000451389 | sg00000149483 | tmem138-204 | 11 | 61364250 | 61368283 | + | lnc_RNA | processed_transcript |
| 413689 | enst00000381787 | sg00000149483 | tmem138-202 | 11 | 61365703 | 61369211 | + | mRNA | protein_coding |
| 414965 | enst00000539776 | sg00000149483 | tmem138-207 | 11 | 61366979 | 61369211 | + | lnc_RNA | retained_intron |
| 415891 | enst00000543833 | sg00000149483 | tmem138-211 | 11 | 61367905 | 61369211 | + | lnc_RNA | retained_intron |
| -435046 | enst00000527948 | sg00000204979 | ms4a13-204 | 11 | 60515539 | 60542621 | + | mRNA | protein_coding |
| -435172 | enst00000437058 | sg00000204979 | ms4a13-203 | 11 | 60515413 | 60542721 | + | mRNA | protein_coding |
| -435172 | enst00000378185 | sg00000204979 | ms4a13-201 | 11 | 60515413 | 60542721 | + | mRNA | protein_coding |
| -435193 | enst00000378186 | sg00000204979 | ms4a13-202 | 11 | 60515392 | 60542721 | + | mRNA | protein_coding |
| 440346 | enst00000334888 | sg00000187049 | tmem216-201 | 11 | 61392360 | 61398863 | + | mRNA | protein_coding |
| 440379 | enst00000398979 | sg00000187049 | tmem216-202 | 11 | 61392393 | 61398493 | + | mRNA | protein_coding |
| 440573 | enst00000515837 | sg00000187049 | tmem216-203 | 11 | 61392587 | 61398846 | + | mRNA | protein_coding |
| 440616 | enst00000544795 | sg00000187049 | tmem216-205 | 11 | 61392630 | 61397975 | + | lnc_RNA | retained_intron |
| 440618 | enst00000541473 | sg00000187049 | tmem216-204 | 11 | 61392632 | 61394301 | + | lnc_RNA | retained_intron |
| 454156 | enst00000494016 | sg00000149532 | cpsf7-213 | 11 | 61404288 | 61406170 | - | lnc_RNA | processed_transcript |
| -457785 | enst00000530007 | sg00000071203 | ms4a12-204 | 11 | 60492800 | 60501111 | + | mRNA | protein_coding |
| -457807 | enst00000525951 | sg00000071203 | ms4a12-202 | 11 | 60492778 | 60498062 | + | lnc_RNA | processed_transcript |
| -457807 | enst00000526784 | sg00000071203 | ms4a12-203 | 11 | 60492778 | 60506798 | + | mRNA | protein_coding |
| -457807 | enst00000537076 | sg00000071203 | ms4a12-205 | 11 | 60492778 | 60507420 | + | mRNA | protein_coding |
| -457807 | enst00000016913 | sg00000071203 | ms4a12-201 | 11 | 60492778 | 60507430 | + | mRNA | protein_coding |
| 475311 | enst00000623917 | sg00000279632 | ap003108.4-201 | 11 | 61426448 | 61427325 | - | unconfirmed_transcript | tec |
| 477206 | enst00000544025 | sg00000256591 | ap003108.2-201 | 11 | 61429220 | 61481879 | + | lnc_RNA | processed_transcript |
| 477221 | enst00000626926 | sg00000149532 | cpsf7-226 | 11 | 61421225 | 61429235 | - | mRNA | protein_coding |
| 477250 | enst00000543545 | sg00000149532 | cpsf7-221 | 11 | 61416500 | 61429264 | - | mRNA | nonsense_mediated_decay |
| 477270 | enst00000544990 | sg00000149532 | cpsf7-224 | 11 | 61416369 | 61429284 | - | mRNA | nonsense_mediated_decay |
| 477276 | enst00000536145 | sg00000149532 | cpsf7-215 | 11 | 61420058 | 61429290 | - | mRNA | nonsense_mediated_decay |
| 477290 | enst00000448745 | sg00000149532 | cpsf7-206 | 11 | 61404419 | 61429304 | - | mRNA | protein_coding |
| 477519 | enst00000489728 | sg00000149532 | cpsf7-212 | 11 | 61421314 | 61429533 | - | lnc_RNA | retained_intron |
| 477536 | enst00000413184 | sg00000149532 | cpsf7-203 | 11 | 61420057 | 61429550 | - | mRNA | protein_coding |
| 477701 | enst00000449811 | sg00000149532 | cpsf7-207 | 11 | 61420041 | 61429715 | - | mRNA | protein_coding |
| 477800 | enst00000413232 | sg00000149532 | cpsf7-204 | 11 | 61416429 | 61429814 | - | mRNA | protein_coding |
| 477897 | enst00000340437 | sg00000149532 | cpsf7-201 | 11 | 61402641 | 61429911 | - | mRNA | protein_coding |
| 477906 | enst00000539952 | sg00000149532 | cpsf7-219 | 11 | 61416179 | 61429920 | - | mRNA | protein_coding |
| 477906 | enst00000545934 | sg00000149532 | cpsf7-225 | 11 | 61420494 | 61429920 | - | lnc_RNA | processed_transcript |
| 477908 | enst00000450000 | sg00000149532 | cpsf7-208 | 11 | 61420035 | 61429922 | - | mRNA | protein_coding |
| 477908 | enst00000536548 | sg00000149532 | cpsf7-216 | 11 | 61420031 | 61429922 | - | mRNA | nonsense_mediated_decay |
| 477908 | enst00000544585 | sg00000149532 | cpsf7-222 | 11 | 61416385 | 61429922 | - | mRNA | protein_coding |
| 477927 | enst00000474684 | sg00000149532 | cpsf7-210 | 11 | 61421395 | 61429941 | - | lnc_RNA | retained_intron |
| 477934 | enst00000541963 | sg00000149532 | cpsf7-220 | 11 | 61419970 | 61429948 | - | mRNA | protein_coding |
| 477936 | enst00000544669 | sg00000149532 | cpsf7-223 | 11 | 61416178 | 61429950 | - | lnc_RNA | retained_intron |
| 477954 | enst00000477890 | sg00000149532 | cpsf7-211 | 11 | 61411007 | 61429968 | - | mRNA | protein_coding |
| 477961 | enst00000537641 | sg00000149532 | cpsf7-218 | 11 | 61410572 | 61429975 | - | lnc_RNA | retained_intron |
| 477964 | enst00000535222 | sg00000149532 | cpsf7-214 | 11 | 61416297 | 61429978 | - | mRNA | nonsense_mediated_decay |
| 477974 | enst00000537162 | sg00000149532 | cpsf7-217 | 11 | 61416465 | 61429988 | - | mRNA | nonsense_mediated_decay |
| 477978 | enst00000463244 | sg00000149532 | cpsf7-209 | 11 | 61420993 | 61429992 | - | lnc_RNA | processed_transcript |
| 478000 | enst00000439958 | sg00000149532 | cpsf7-205 | 11 | 61402731 | 61430014 | - | mRNA | protein_coding |
| 478017 | enst00000394888 | sg00000149532 | cpsf7-202 | 11 | 61402649 | 61430031 | - | mRNA | protein_coding |
| 478028 | enst00000542794 | sg00000167985 | sdhaf2-207 | 11 | 61430042 | 61446342 | + | mRNA | nonsense_mediated_decay |
| 478042 | enst00000541135 | sg00000256591 | ap003108.2-202 | 11 | 61430056 | 61481842 | + | mRNA | protein_coding |
| 478059 | enst00000301761 | sg00000167985 | sdhaf2-201 | 11 | 61430073 | 61447529 | + | mRNA | protein_coding |
| 478091 | enst00000542074 | sg00000167985 | sdhaf2-206 | 11 | 61430105 | 61446697 | + | mRNA | protein_coding |
| 478107 | enst00000536670 | sg00000256591 | ap003108.2-203 | 11 | 61430121 | 61468716 | + | lnc_RNA | retained_intron |
| 478110 | enst00000623232 | sg00000256591 | ap003108.2-204 | 11 | 61430124 | 61436135 | + | unconfirmed_transcript | tec |
| 478110 | enst00000534878 | sg00000167985 | sdhaf2-203 | 11 | 61430124 | 61438243 | + | mRNA | protein_coding |
| 478111 | enst00000359614 | sg00000167985 | sdhaf2-202 | 11 | 61430125 | 61446005 | + | mRNA | nonsense_mediated_decay |
| 478111 | enst00000537782 | sg00000167985 | sdhaf2-205 | 11 | 61430125 | 61446059 | + | mRNA | protein_coding |
| 478111 | enst00000538594 | sg00000256591 | ap003108.2-205 | 11 | 61430125 | 61484727 | + | mRNA | nonsense_mediated_decay |
| 478112 | enst00000544801 | sg00000256591 | ap003108.2-206 | 11 | 61430126 | 61484762 | + | mRNA | nonsense_mediated_decay |
| 478117 | enst00000536250 | sg00000167985 | sdhaf2-204 | 11 | 61430131 | 61438186 | + | mRNA | nonsense_mediated_decay |
| 478129 | enst00000544880 | sg00000256591 | ap003108.2-207 | 11 | 61430143 | 61485822 | + | lnc_RNA | processed_transcript |
| 478130 | enst00000543265 | sg00000167985 | sdhaf2-208 | 11 | 61430144 | 61446115 | + | mRNA | protein_coding |
| 478136 | enst00000543044 | sg00000256591 | ap003108.2-208 | 11 | 61430150 | 61482398 | + | mRNA | nonsense_mediated_decay |
| -483988 | enst00000530482 | sg00000156738 | ms4a1-206 | 11 | 60466597 | 60468269 | + | lnc_RNA | retained_intron |
| -484825 | enst00000532418 | sg00000156738 | ms4a1-208 | 11 | 60465760 | 60468331 | + | lnc_RNA | retained_intron |
| -488404 | enst00000389939 | sg00000156738 | ms4a1-202 | 11 | 60462181 | 60470752 | + | mRNA | protein_coding |
| 492135 | enst00000484055 | sg00000240823 | rn7sl23p-201 | 11 | 61444149 | 61444423 | + | ncRNA | misc_rna |
| -494726 | enst00000534503 | sg00000156738 | ms4a1-211 | 11 | 60455859 | 60464312 | + | lnc_RNA | processed_transcript |
| -494726 | enst00000533306 | sg00000156738 | ms4a1-210 | 11 | 60455859 | 60465944 | + | mRNA | protein_coding |
| -494734 | enst00000528313 | sg00000156738 | ms4a1-205 | 11 | 60455851 | 60468892 | + | mRNA | protein_coding |
| -494738 | enst00000534668 | sg00000156738 | ms4a1-212 | 11 | 60455847 | 60470760 | + | mRNA | protein_coding |
| -494738 | enst00000532073 | sg00000156738 | ms4a1-207 | 11 | 60455847 | 60470058 | + | mRNA | protein_coding |
| -494738 | enst00000527101 | sg00000156738 | ms4a1-204 | 11 | 60455847 | 60463805 | + | lnc_RNA | processed_transcript |
| -494739 | enst00000532491 | sg00000156738 | ms4a1-209 | 11 | 60455846 | 60462393 | + | mRNA | protein_coding |
| -494776 | enst00000345732 | sg00000156738 | ms4a1-201 | 11 | 60455809 | 60470752 | + | mRNA | protein_coding |
| -494833 | enst00000524807 | sg00000156738 | ms4a1-203 | 11 | 60455752 | 60462396 | + | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc