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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #157 | 19 | 6475043 | 6476116 | 1073 | 3 | 34 | 2.52673e-15 | 1.60053e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 99 | enst00000590818 | sg00000205744 | dennd1c-210 | 19 | 6467208 | 6476215 | - | lnc_RNA | retained_intron |
| 130 | enst00000590444 | sg00000205744 | dennd1c-208 | 19 | 6467207 | 6476246 | - | lnc_RNA | retained_intron |
| 1472 | enst00000589491 | sg00000205744 | dennd1c-206 | 19 | 6476851 | 6477588 | - | lnc_RNA | retained_intron |
| 2684 | enst00000588988 | sg00000205744 | dennd1c-205 | 19 | 6476028 | 6478800 | - | lnc_RNA | retained_intron |
| 4173 | enst00000590867 | sg00000205744 | dennd1c-211 | 19 | 6467210 | 6480289 | - | mRNA | nonsense_mediated_decay |
| -5392 | enst00000591795 | sg00000205744 | dennd1c-213 | 19 | 6467950 | 6469651 | - | lnc_RNA | retained_intron |
| -5578 | enst00000615487 | sg00000275234 | ac010503.5-201 | 19 | 6469465 | 6470152 | + | lnc_RNA | lncrna |
| 5637 | enst00000588421 | sg00000205744 | dennd1c-204 | 19 | 6477428 | 6481753 | - | mRNA | protein_coding |
| 5658 | enst00000592543 | sg00000205744 | dennd1c-214 | 19 | 6476494 | 6481774 | - | lnc_RNA | retained_intron |
| 5671 | enst00000381480 | sg00000205744 | dennd1c-201 | 19 | 6467207 | 6481787 | - | mRNA | protein_coding |
| 5671 | enst00000543576 | sg00000205744 | dennd1c-202 | 19 | 6467498 | 6481787 | - | mRNA | protein_coding |
| 5671 | enst00000590173 | sg00000205744 | dennd1c-207 | 19 | 6477086 | 6481787 | - | mRNA | protein_coding |
| 5682 | enst00000591030 | sg00000205744 | dennd1c-212 | 19 | 6477112 | 6481798 | - | lnc_RNA | processed_transcript |
| 5682 | enst00000586046 | sg00000205744 | dennd1c-203 | 19 | 6477093 | 6481798 | - | mRNA | nonsense_mediated_decay |
| 6441 | enst00000590473 | sg00000205744 | dennd1c-209 | 19 | 6477218 | 6482557 | - | mRNA | protein_coding |
| -9840 | enst00000597307 | sg00000125648 | slc25a23-208 | 19 | 6456420 | 6465203 | - | mRNA | protein_coding |
| -10512 | enst00000308243 | sg00000130545 | crb3-201 | 19 | 6464531 | 6466769 | + | mRNA | protein_coding |
| -10760 | enst00000356762 | sg00000130545 | crb3-202 | 19 | 6464283 | 6467221 | + | mRNA | protein_coding |
| -10772 | enst00000600229 | sg00000130545 | crb3-204 | 19 | 6464271 | 6467221 | + | mRNA | protein_coding |
| -11266 | enst00000598494 | sg00000130545 | crb3-203 | 19 | 6463777 | 6467221 | + | mRNA | protein_coding |
| -15251 | enst00000301454 | sg00000125648 | slc25a23-202 | 19 | 6440064 | 6459792 | - | mRNA | protein_coding |
| -15273 | enst00000595267 | sg00000125648 | slc25a23-205 | 19 | 6456303 | 6459770 | - | lnc_RNA | retained_intron |
| -15292 | enst00000264088 | sg00000125648 | slc25a23-201 | 19 | 6436081 | 6459751 | - | mRNA | nonsense_mediated_decay |
| -15308 | enst00000334510 | sg00000125648 | slc25a23-203 | 19 | 6443562 | 6459735 | - | mRNA | protein_coding |
| 18204 | enst00000599292 | sg00000268203 | ac010503.3-201 | 19 | 6494320 | 6494805 | + | lnc_RNA | lncrna |
| 18204 | enst00000596027 | sg00000268191 | ac010503.2-201 | 19 | 6494320 | 6495025 | + | lnc_RNA | lncrna |
| -20373 | enst00000598908 | sg00000125648 | slc25a23-210 | 19 | 6436081 | 6454670 | - | mRNA | protein_coding |
| -20373 | enst00000600682 | sg00000125648 | slc25a23-211 | 19 | 6441474 | 6454670 | - | mRNA | protein_coding |
| -20638 | enst00000593600 | sg00000125648 | slc25a23-204 | 19 | 6441342 | 6454405 | - | mRNA | protein_coding |
| -20667 | enst00000601322 | sg00000125648 | slc25a23-212 | 19 | 6436192 | 6454376 | - | mRNA | protein_coding |
| -21034 | enst00000595810 | sg00000125648 | slc25a23-206 | 19 | 6436079 | 6454009 | - | mRNA | protein_coding |
| -22442 | enst00000597039 | sg00000125648 | slc25a23-207 | 19 | 6441930 | 6452601 | - | lnc_RNA | retained_intron |
| -22655 | enst00000598704 | sg00000125648 | slc25a23-209 | 19 | 6436079 | 6452388 | - | mRNA | nonsense_mediated_decay |
| 25671 | enst00000596291 | sg00000104833 | tubb4a-206 | 19 | 6496061 | 6501787 | - | mRNA | protein_coding |
| 26193 | enst00000596926 | sg00000104833 | tubb4a-207 | 19 | 6496142 | 6502309 | - | mRNA | protein_coding |
| 26193 | enst00000594290 | sg00000104833 | tubb4a-204 | 19 | 6496170 | 6502309 | - | mRNA | nonsense_mediated_decay |
| 26193 | enst00000594276 | sg00000104833 | tubb4a-203 | 19 | 6495722 | 6502309 | - | mRNA | protein_coding |
| 26193 | enst00000264071 | sg00000104833 | tubb4a-201 | 19 | 6494319 | 6502309 | - | mRNA | protein_coding |
| 26193 | enst00000594075 | sg00000104833 | tubb4a-202 | 19 | 6495807 | 6502309 | - | mRNA | protein_coding |
| 26193 | enst00000595324 | sg00000104833 | tubb4a-205 | 19 | 6495905 | 6502309 | - | mRNA | nonsense_mediated_decay |
| 26193 | enst00000600216 | sg00000104833 | tubb4a-211 | 19 | 6495808 | 6502309 | - | mRNA | protein_coding |
| 26221 | enst00000598006 | sg00000104833 | tubb4a-209 | 19 | 6496016 | 6502337 | - | mRNA | protein_coding |
| 26222 | enst00000601152 | sg00000104833 | tubb4a-212 | 19 | 6495959 | 6502338 | - | mRNA | protein_coding |
| 26687 | enst00000598635 | sg00000104833 | tubb4a-210 | 19 | 6496179 | 6502803 | - | mRNA | protein_coding |
| 26728 | enst00000597686 | sg00000104833 | tubb4a-208 | 19 | 6496131 | 6502844 | - | mRNA | protein_coding |
| 26732 | enst00000601640 | sg00000104833 | tubb4a-213 | 19 | 6496176 | 6502848 | - | mRNA | protein_coding |
| -30764 | enst00000601760 | sg00000125648 | slc25a23-213 | 19 | 6436421 | 6444279 | - | lnc_RNA | processed_transcript |
| -41264 | enst00000597558 | sg00000181240 | slc25a41-203 | 19 | 6426037 | 6433779 | - | mRNA | nonsense_mediated_decay |
| -41280 | enst00000321510 | sg00000181240 | slc25a41-201 | 19 | 6426037 | 6433763 | - | mRNA | protein_coding |
| -41281 | enst00000458275 | sg00000181240 | slc25a41-202 | 19 | 6426039 | 6433762 | - | mRNA | nonsense_mediated_decay |
| -50249 | enst00000398148 | sg00000088247 | khsrp-201 | 19 | 6413348 | 6424794 | - | mRNA | protein_coding |
| -50268 | enst00000619396 | sg00000088247 | khsrp-213 | 19 | 6413430 | 6424775 | - | mRNA | protein_coding |
| -50514 | enst00000599395 | sg00000088247 | khsrp-210 | 19 | 6417739 | 6424529 | - | mRNA | protein_coding |
| -50716 | enst00000595548 | sg00000088247 | khsrp-207 | 19 | 6418020 | 6424327 | - | mRNA | protein_coding |
| -50766 | enst00000595258 | sg00000088247 | khsrp-206 | 19 | 6418701 | 6424277 | - | mRNA | protein_coding |
| -52686 | enst00000597704 | sg00000088247 | khsrp-209 | 19 | 6421001 | 6422357 | - | lnc_RNA | retained_intron |
| -53345 | enst00000595112 | sg00000088247 | khsrp-204 | 19 | 6417739 | 6421698 | - | lnc_RNA | retained_intron |
| 54910 | enst00000245817 | sg00000125657 | tnfsf9-201 | 19 | 6531026 | 6535924 | + | mRNA | protein_coding |
| -58231 | enst00000595223 | sg00000088247 | khsrp-205 | 19 | 6413965 | 6416812 | - | mRNA | protein_coding |
| -58532 | enst00000579148 | sg00000284159 | mir3940-201 | 19 | 6416410 | 6416511 | - | miRNA | mirna |
| -59322 | enst00000599642 | sg00000088247 | khsrp-211 | 19 | 6415216 | 6415721 | - | lnc_RNA | retained_intron |
| -59336 | enst00000600480 | sg00000088247 | khsrp-212 | 19 | 6414703 | 6415707 | - | mRNA | protein_coding |
| -59348 | enst00000594745 | sg00000088247 | khsrp-203 | 19 | 6413411 | 6415695 | - | mRNA | protein_coding |
| -59359 | enst00000594496 | sg00000088247 | khsrp-202 | 19 | 6414457 | 6415684 | - | mRNA | protein_coding |
| -59595 | enst00000597656 | sg00000088247 | khsrp-208 | 19 | 6413641 | 6415448 | - | mRNA | protein_coding |
| 78378 | enst00000594355 | sg00000268742 | ac010503.4-201 | 19 | 6552358 | 6554494 | - | pseudogenic_transcript | processed_pseudogene |
| -78698 | enst00000596254 | sg00000214347 | ac011491.1-203 | 19 | 6396345 | 6412404 | + | lnc_RNA | processed_transcript |
| -81062 | enst00000598607 | sg00000125651 | gtf2f1-206 | 19 | 6387505 | 6393981 | - | mRNA | protein_coding |
| -81234 | enst00000593563 | sg00000214347 | ac011491.1-202 | 19 | 6393809 | 6411777 | + | lnc_RNA | processed_transcript |
| -81249 | enst00000637688 | sg00000214347 | ac011491.1-201 | 19 | 6393794 | 6412338 | + | pseudogenic_transcript | transcribed_unitary_pseudogene |
| -81838 | enst00000595047 | sg00000125651 | gtf2f1-205 | 19 | 6381413 | 6393205 | - | mRNA | protein_coding |
| -81879 | enst00000394456 | sg00000125651 | gtf2f1-201 | 19 | 6379572 | 6393164 | - | mRNA | protein_coding |
| -82060 | enst00000611058 | sg00000273758 | mir6790-201 | 19 | 6392921 | 6392983 | - | miRNA | mirna |
| -83091 | enst00000593678 | sg00000125651 | gtf2f1-202 | 19 | 6379878 | 6391952 | - | mRNA | protein_coding |
| -84643 | enst00000599584 | sg00000269444 | ac011491.2-201 | 19 | 6386762 | 6390400 | - | lnc_RNA | lncrna |
| -85340 | enst00000612241 | sg00000274390 | mir6885-201 | 19 | 6389638 | 6389703 | - | miRNA | mirna |
| 87732 | enst00000601934 | sg00000269546 | clic4p2-201 | 19 | 6562123 | 6563848 | - | pseudogenic_transcript | processed_pseudogene |
| -93223 | enst00000594213 | sg00000125651 | gtf2f1-203 | 19 | 6380190 | 6381820 | - | lnc_RNA | retained_intron |
| -93268 | enst00000594965 | sg00000125651 | gtf2f1-204 | 19 | 6380391 | 6381775 | - | lnc_RNA | retained_intron |
| -95985 | enst00000597721 | sg00000125650 | pspn-202 | 19 | 6375148 | 6379058 | - | mRNA | protein_coding |
| 96941 | enst00000362353 | sg00000199223 | ac010503.1-201 | 19 | 6572956 | 6573057 | - | ncRNA | misc_rna |
| -99194 | enst00000245810 | sg00000125650 | pspn-201 | 19 | 6375294 | 6375849 | - | mRNA | protein_coding |
| -101339 | enst00000599849 | sg00000125652 | alkbh7-203 | 19 | 6373704 | 6375031 | + | mRNA | protein_coding |
| -101572 | enst00000596657 | sg00000125652 | alkbh7-202 | 19 | 6373471 | 6375027 | + | mRNA | protein_coding |
| -102249 | enst00000245812 | sg00000125652 | alkbh7-201 | 19 | 6372794 | 6375250 | + | mRNA | protein_coding |
| -110475 | enst00000646643 | sg00000125656 | clpp-207 | 19 | 6364568 | 6368906 | + | mRNA | protein_coding |
| -112894 | enst00000595644 | sg00000269802 | ac011491.3-201 | 19 | 6343761 | 6362149 | - | lnc_RNA | lncrna |
| -113155 | enst00000596605 | sg00000125656 | clpp-205 | 19 | 6361888 | 6368902 | + | mRNA | protein_coding |
| -113239 | enst00000596149 | sg00000125656 | clpp-204 | 19 | 6361804 | 6368754 | + | mRNA | protein_coding |
| -113296 | enst00000597326 | sg00000125656 | clpp-206 | 19 | 6361747 | 6368545 | + | mRNA | protein_coding |
| -113369 | enst00000594780 | sg00000125656 | clpp-202 | 19 | 6361674 | 6365190 | + | lnc_RNA | retained_intron |
| -113478 | enst00000596070 | sg00000125656 | clpp-203 | 19 | 6361565 | 6368707 | + | lnc_RNA | retained_intron |
| -113512 | enst00000245816 | sg00000125656 | clpp-201 | 19 | 6361531 | 6370242 | + | mRNA | protein_coding |
| 115023 | enst00000423145 | sg00000125726 | cd70-202 | 19 | 6583183 | 6591139 | - | mRNA | protein_coding |
| 115034 | enst00000245903 | sg00000125726 | cd70-201 | 19 | 6585839 | 6591150 | - | mRNA | protein_coding |
| 117213 | enst00000600588 | sg00000268785 | rpl7p50-201 | 19 | 6593329 | 6594055 | + | pseudogenic_transcript | processed_pseudogene |
| 127987 | enst00000597430 | sg00000125726 | cd70-203 | 19 | 6590103 | 6604103 | - | mRNA | protein_coding |
| -141431 | enst00000301452 | sg00000167769 | acer1-201 | 19 | 6306142 | 6333612 | - | mRNA | protein_coding |
| 194001 | enst00000245912 | sg00000125735 | tnfsf14-201 | 19 | 6661253 | 6670117 | - | mRNA | protein_coding |
| 194472 | enst00000599359 | sg00000125735 | tnfsf14-202 | 19 | 6664555 | 6670588 | - | mRNA | protein_coding |
| -195068 | enst00000252674 | sg00000130382 | mllt1-201 | 19 | 6210381 | 6279975 | - | mRNA | protein_coding |
| 202214 | enst00000601475 | sg00000125730 | c3-216 | 19 | 6677835 | 6678330 | - | lnc_RNA | retained_intron |
| 203085 | enst00000602229 | sg00000125730 | c3-218 | 19 | 6677864 | 6679201 | - | mRNA | protein_coding |
| 204035 | enst00000599668 | sg00000125730 | c3-211 | 19 | 6677867 | 6680151 | - | lnc_RNA | processed_transcript |
| 207244 | enst00000599899 | sg00000125730 | c3-212 | 19 | 6677841 | 6683360 | - | lnc_RNA | retained_intron |
| 208516 | enst00000596179 | sg00000125730 | c3-206 | 19 | 6684233 | 6684632 | - | lnc_RNA | retained_intron |
| 208922 | enst00000596548 | sg00000125730 | c3-208 | 19 | 6680159 | 6685038 | - | mRNA | protein_coding |
| 210260 | enst00000596238 | sg00000125730 | c3-207 | 19 | 6684560 | 6686376 | - | lnc_RNA | retained_intron |
| -211574 | enst00000623576 | sg00000280394 | ac011471.3-201 | 19 | 6263068 | 6263469 | - | unconfirmed_transcript | tec |
| 214596 | enst00000601008 | sg00000125730 | c3-215 | 19 | 6677897 | 6690712 | - | mRNA | protein_coding |
| -215886 | enst00000588192 | sg00000267563 | ac011471.2-201 | 19 | 6259157 | 6259799 | + | lnc_RNA | lncrna |
| 216967 | enst00000598805 | sg00000125730 | c3-210 | 19 | 6686289 | 6693083 | - | lnc_RNA | retained_intron |
| 221599 | enst00000594005 | sg00000125730 | c3-202 | 19 | 6696614 | 6697715 | - | lnc_RNA | retained_intron |
| 226756 | enst00000602053 | sg00000125730 | c3-217 | 19 | 6697662 | 6702872 | - | lnc_RNA | retained_intron |
| 234841 | enst00000600763 | sg00000125730 | c3-214 | 19 | 6709756 | 6710957 | - | lnc_RNA | retained_intron |
| 237199 | enst00000594270 | sg00000125730 | c3-203 | 19 | 6712280 | 6713315 | - | lnc_RNA | processed_transcript |
| 237672 | enst00000597442 | sg00000125730 | c3-209 | 19 | 6712307 | 6713788 | - | lnc_RNA | processed_transcript |
| 238235 | enst00000595577 | sg00000125730 | c3-205 | 19 | 6712316 | 6714351 | - | lnc_RNA | retained_intron |
| 241626 | enst00000614781 | sg00000276980 | ac008760.2-201 | 19 | 6716386 | 6717742 | - | lnc_RNA | lncrna |
| 244534 | enst00000594936 | sg00000125730 | c3-204 | 19 | 6718034 | 6720650 | - | lnc_RNA | retained_intron |
| 244534 | enst00000245907 | sg00000125730 | c3-201 | 19 | 6677704 | 6720650 | - | mRNA | protein_coding |
| 254446 | enst00000600744 | sg00000125730 | c3-213 | 19 | 6718247 | 6730562 | - | mRNA | protein_coding |
| 255938 | enst00000537722 | sg00000125734 | gpr108-203 | 19 | 6730055 | 6732054 | - | lnc_RNA | processed_transcript |
| 255940 | enst00000594500 | sg00000125734 | gpr108-205 | 19 | 6730055 | 6732056 | - | mRNA | protein_coding |
| 255952 | enst00000598626 | sg00000125734 | gpr108-213 | 19 | 6730056 | 6732068 | - | lnc_RNA | processed_transcript |
| 256221 | enst00000594034 | sg00000125734 | gpr108-204 | 19 | 6730068 | 6732337 | - | mRNA | protein_coding |
| 256657 | enst00000600773 | sg00000125734 | gpr108-215 | 19 | 6732083 | 6732773 | - | lnc_RNA | retained_intron |
| 257185 | enst00000598955 | sg00000125734 | gpr108-214 | 19 | 6731253 | 6733301 | - | mRNA | protein_coding |
| -258075 | enst00000585588 | sg00000130382 | mllt1-202 | 19 | 6213120 | 6216968 | - | lnc_RNA | processed_transcript |
| 260662 | enst00000621745 | sg00000283950 | mir6791-201 | 19 | 6736712 | 6736778 | - | miRNA | mirna |
| 260668 | enst00000597043 | sg00000125734 | gpr108-209 | 19 | 6735908 | 6736784 | - | lnc_RNA | retained_intron |
| 261144 | enst00000430424 | sg00000125734 | gpr108-202 | 19 | 6730086 | 6737260 | - | mRNA | protein_coding |
| 261157 | enst00000601402 | sg00000125734 | gpr108-216 | 19 | 6735622 | 6737273 | - | lnc_RNA | retained_intron |
| 261201 | enst00000597298 | sg00000125734 | gpr108-210 | 19 | 6733190 | 6737317 | - | mRNA | protein_coding |
| 261205 | enst00000595108 | sg00000125734 | gpr108-206 | 19 | 6733935 | 6737321 | - | lnc_RNA | retained_intron |
| 261393 | enst00000595908 | sg00000125734 | gpr108-208 | 19 | 6730085 | 6737509 | - | mRNA | nonsense_mediated_decay |
| 261423 | enst00000598052 | sg00000125734 | gpr108-212 | 19 | 6733234 | 6737539 | - | mRNA | nonsense_mediated_decay |
| 261433 | enst00000595620 | sg00000125734 | gpr108-207 | 19 | 6735374 | 6737549 | - | lnc_RNA | retained_intron |
| 261444 | enst00000597706 | sg00000125734 | gpr108-211 | 19 | 6730098 | 6737560 | - | mRNA | nonsense_mediated_decay |
| 261458 | enst00000601716 | sg00000125734 | gpr108-217 | 19 | 6733570 | 6737574 | - | mRNA | protein_coding |
| 261487 | enst00000264080 | sg00000125734 | gpr108-201 | 19 | 6729914 | 6737603 | - | mRNA | protein_coding |
| 261809 | enst00000600428 | sg00000125733 | trip10-210 | 19 | 6737925 | 6751500 | + | mRNA | protein_coding |
| 262916 | enst00000596543 | sg00000125733 | trip10-206 | 19 | 6739032 | 6743081 | + | lnc_RNA | processed_transcript |
| 263564 | enst00000313285 | sg00000125733 | trip10-202 | 19 | 6739680 | 6751526 | + | mRNA | protein_coding |
| 263564 | enst00000313244 | sg00000125733 | trip10-201 | 19 | 6739680 | 6751530 | + | mRNA | protein_coding |
| -263567 | enst00000587473 | sg00000130382 | mllt1-203 | 19 | 6210689 | 6211476 | - | lnc_RNA | processed_transcript |
| 263598 | enst00000600677 | sg00000125733 | trip10-212 | 19 | 6739714 | 6751509 | + | mRNA | nonsense_mediated_decay |
| 263611 | enst00000595305 | sg00000125733 | trip10-203 | 19 | 6739727 | 6751526 | + | lnc_RNA | retained_intron |
| 263646 | enst00000596758 | sg00000125733 | trip10-208 | 19 | 6739762 | 6751464 | + | mRNA | protein_coding |
| 264567 | enst00000600491 | sg00000125733 | trip10-211 | 19 | 6740683 | 6745200 | + | lnc_RNA | retained_intron |
| 264793 | enst00000596078 | sg00000125733 | trip10-205 | 19 | 6740909 | 6743890 | + | lnc_RNA | retained_intron |
| 264802 | enst00000596673 | sg00000125733 | trip10-207 | 19 | 6740918 | 6743769 | + | mRNA | protein_coding |
| 264828 | enst00000595319 | sg00000125733 | trip10-204 | 19 | 6740944 | 6743829 | + | lnc_RNA | retained_intron |
| 265109 | enst00000601303 | sg00000125733 | trip10-213 | 19 | 6741225 | 6743412 | + | lnc_RNA | processed_transcript |
| 270192 | enst00000598843 | sg00000125733 | trip10-209 | 19 | 6746308 | 6750373 | + | lnc_RNA | retained_intron |
| 275351 | enst00000594056 | sg00000269680 | ac008760.1-201 | 19 | 6748293 | 6751467 | - | lnc_RNA | lncrna |
| -275471 | enst00000589641 | sg00000087903 | rfx2-213 | 19 | 6191570 | 6199572 | - | lnc_RNA | processed_transcript |
| -275480 | enst00000589712 | sg00000087903 | rfx2-214 | 19 | 6175873 | 6199563 | - | lnc_RNA | processed_transcript |
| -275514 | enst00000592883 | sg00000087903 | rfx2-223 | 19 | 6040074 | 6199529 | - | mRNA | protein_coding |
| -275514 | enst00000587700 | sg00000087903 | rfx2-209 | 19 | 6189728 | 6199529 | - | lnc_RNA | processed_transcript |
| -275519 | enst00000585324 | sg00000087903 | rfx2-203 | 19 | 6176275 | 6199524 | - | lnc_RNA | processed_transcript |
| -275536 | enst00000589523 | sg00000087903 | rfx2-212 | 19 | 6191326 | 6199507 | - | lnc_RNA | processed_transcript |
| -275638 | enst00000638271 | sg00000284490 | ac011471.4-201 | 19 | 6199405 | 6205121 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 279125 | enst00000597168 | sg00000125731 | sh2d3a-205 | 19 | 6752160 | 6755241 | - | lnc_RNA | processed_transcript |
| 285049 | enst00000599563 | sg00000125731 | sh2d3a-208 | 19 | 6754974 | 6761165 | - | lnc_RNA | processed_transcript |
| -287712 | enst00000590132 | sg00000130377 | acsbg2-209 | 19 | 6187331 | 6193091 | + | mRNA | nonsense_mediated_decay |
| 288365 | enst00000595369 | sg00000125731 | sh2d3a-203 | 19 | 6757330 | 6764481 | - | lnc_RNA | retained_intron |
| 291309 | enst00000597254 | sg00000125731 | sh2d3a-206 | 19 | 6754906 | 6767425 | - | lnc_RNA | processed_transcript |
| 291319 | enst00000245908 | sg00000125731 | sh2d3a-201 | 19 | 6752160 | 6767435 | - | mRNA | protein_coding |
| 291319 | enst00000437152 | sg00000125731 | sh2d3a-202 | 19 | 6752165 | 6767435 | - | mRNA | protein_coding |
| 291319 | enst00000595681 | sg00000125731 | sh2d3a-204 | 19 | 6753583 | 6767435 | - | lnc_RNA | retained_intron |
| 291347 | enst00000597687 | sg00000125731 | sh2d3a-207 | 19 | 6754616 | 6767463 | - | mRNA | protein_coding |
| 296592 | enst00000602142 | sg00000141968 | vav1-210 | 19 | 6772708 | 6857361 | + | mRNA | protein_coding |
| 296598 | enst00000304076 | sg00000141968 | vav1-201 | 19 | 6772714 | 6857366 | + | mRNA | protein_coding |
| 296612 | enst00000596764 | sg00000141968 | vav1-204 | 19 | 6772728 | 6857360 | + | mRNA | protein_coding |
| -298601 | enst00000585766 | sg00000267415 | ac011471.1-201 | 19 | 6176256 | 6176442 | - | pseudogenic_transcript | transcribed_processed_pseudogene |
| 308002 | enst00000599806 | sg00000141968 | vav1-207 | 19 | 6784118 | 6857366 | + | mRNA | protein_coding |
| -313563 | enst00000591741 | sg00000130377 | acsbg2-212 | 19 | 6161480 | 6193091 | + | lnc_RNA | processed_transcript |
| -314483 | enst00000585526 | sg00000130377 | acsbg2-201 | 19 | 6160560 | 6177368 | + | lnc_RNA | processed_transcript |
| -318593 | enst00000587227 | sg00000130377 | acsbg2-203 | 19 | 6156450 | 6177361 | + | mRNA | nonsense_mediated_decay |
| -339342 | enst00000587617 | sg00000130377 | acsbg2-204 | 19 | 6135701 | 6165992 | + | mRNA | nonsense_mediated_decay |
| -339360 | enst00000589401 | sg00000130377 | acsbg2-208 | 19 | 6135683 | 6147606 | + | mRNA | protein_coding |
| -339362 | enst00000592677 | sg00000130377 | acsbg2-213 | 19 | 6135681 | 6166019 | + | mRNA | nonsense_mediated_decay |
| -339369 | enst00000586696 | sg00000130377 | acsbg2-202 | 19 | 6135674 | 6193094 | + | mRNA | protein_coding |
| -339374 | enst00000591403 | sg00000130377 | acsbg2-210 | 19 | 6135669 | 6193094 | + | mRNA | protein_coding |
| -339396 | enst00000588722 | sg00000130377 | acsbg2-207 | 19 | 6135647 | 6156471 | + | mRNA | protein_coding |
| -339403 | enst00000588485 | sg00000130377 | acsbg2-206 | 19 | 6135640 | 6193089 | + | mRNA | protein_coding |
| -339408 | enst00000588304 | sg00000130377 | acsbg2-205 | 19 | 6135635 | 6193094 | + | mRNA | protein_coding |
| -339796 | enst00000591738 | sg00000130377 | acsbg2-211 | 19 | 6135247 | 6151797 | + | mRNA | protein_coding |
| 340320 | enst00000539284 | sg00000141968 | vav1-202 | 19 | 6816436 | 6857364 | + | mRNA | protein_coding |
| 346321 | enst00000594082 | sg00000141968 | vav1-203 | 19 | 6822437 | 6827104 | + | lnc_RNA | retained_intron |
| 352199 | enst00000597967 | sg00000141968 | vav1-205 | 19 | 6828315 | 6832174 | + | lnc_RNA | retained_intron |
| 352330 | enst00000601452 | sg00000141968 | vav1-209 | 19 | 6828446 | 6833733 | + | lnc_RNA | retained_intron |
| 352346 | enst00000600396 | sg00000141968 | vav1-208 | 19 | 6828462 | 6833625 | + | lnc_RNA | retained_intron |
| 359693 | enst00000598270 | sg00000141968 | vav1-206 | 19 | 6835809 | 6837026 | + | lnc_RNA | retained_intron |
| -361282 | enst00000592473 | sg00000087903 | rfx2-221 | 19 | 6040035 | 6113761 | - | mRNA | protein_coding |
| -364442 | enst00000593241 | sg00000087903 | rfx2-224 | 19 | 6040086 | 6110601 | - | mRNA | protein_coding |
| -364511 | enst00000592546 | sg00000087903 | rfx2-222 | 19 | 5994502 | 6110532 | - | mRNA | protein_coding |
| -364531 | enst00000589742 | sg00000087903 | rfx2-215 | 19 | 6007775 | 6110512 | - | mRNA | protein_coding |
| -364543 | enst00000303657 | sg00000087903 | rfx2-201 | 19 | 5993164 | 6110500 | - | mRNA | protein_coding |
| -364561 | enst00000586806 | sg00000087903 | rfx2-205 | 19 | 6010182 | 6110482 | - | mRNA | protein_coding |
| -364563 | enst00000587321 | sg00000087903 | rfx2-208 | 19 | 6013039 | 6110480 | - | mRNA | protein_coding |
| -364565 | enst00000586940 | sg00000087903 | rfx2-206 | 19 | 6027164 | 6110478 | - | lnc_RNA | processed_transcript |
| -364567 | enst00000587181 | sg00000087903 | rfx2-207 | 19 | 6040203 | 6110476 | - | mRNA | protein_coding |
| -364570 | enst00000592172 | sg00000087903 | rfx2-218 | 19 | 6026196 | 6110473 | - | lnc_RNA | processed_transcript |
| -364575 | enst00000590822 | sg00000087903 | rfx2-217 | 19 | 6078101 | 6110468 | - | lnc_RNA | processed_transcript |
| -364597 | enst00000586302 | sg00000087903 | rfx2-204 | 19 | 6026163 | 6110446 | - | mRNA | protein_coding |
| -365721 | enst00000588342 | sg00000267299 | ac011444.3-201 | 19 | 6109322 | 6125797 | + | lnc_RNA | lncrna |
| -402220 | enst00000586415 | sg00000267589 | ac011444.4-201 | 19 | 6072823 | 6073527 | + | pseudogenic_transcript | processed_pseudogene |
| -407090 | enst00000587759 | sg00000267262 | ac011444.2-201 | 19 | 6067953 | 6077119 | + | lnc_RNA | lncrna |
| 411450 | enst00000250572 | sg00000174837 | adgre1-201 | 19 | 6887566 | 6940459 | + | mRNA | protein_coding |
| 411455 | enst00000381407 | sg00000174837 | adgre1-204 | 19 | 6887571 | 6940440 | + | mRNA | protein_coding |
| 411461 | enst00000450315 | sg00000174837 | adgre1-205 | 19 | 6887577 | 6940434 | + | mRNA | protein_coding |
| 411463 | enst00000381404 | sg00000174837 | adgre1-203 | 19 | 6887579 | 6940451 | + | mRNA | protein_coding |
| 411463 | enst00000312053 | sg00000174837 | adgre1-202 | 19 | 6887579 | 6940450 | + | mRNA | protein_coding |
| 415034 | enst00000601198 | sg00000174837 | adgre1-208 | 19 | 6891150 | 6901955 | + | lnc_RNA | processed_transcript |
| -417760 | enst00000592281 | sg00000087903 | rfx2-219 | 19 | 6040186 | 6057283 | - | mRNA | protein_coding |
| 420263 | enst00000596944 | sg00000174837 | adgre1-207 | 19 | 6896379 | 6897925 | + | lnc_RNA | retained_intron |
| 420290 | enst00000595026 | sg00000174837 | adgre1-206 | 19 | 6896406 | 6913735 | + | mRNA | protein_coding |
| 420716 | enst00000624996 | sg00000280091 | ac020895.2-201 | 19 | 6894994 | 6896832 | - | unconfirmed_transcript | tec |
| 422183 | enst00000595362 | sg00000269385 | ac020895.1-201 | 19 | 6898299 | 6898686 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -425811 | enst00000359161 | sg00000087903 | rfx2-202 | 19 | 5993517 | 6049232 | - | mRNA | protein_coding |
| -448344 | enst00000588021 | sg00000087903 | rfx2-210 | 19 | 6007866 | 6026699 | - | lnc_RNA | retained_intron |
| -451838 | enst00000592337 | sg00000087903 | rfx2-220 | 19 | 6008189 | 6023205 | - | lnc_RNA | processed_transcript |
| 452229 | enst00000610476 | sg00000276568 | ac025278.3-201 | 19 | 6928345 | 6928629 | + | ncRNA | misc_rna |
| -466817 | enst00000589340 | sg00000087903 | rfx2-211 | 19 | 6002722 | 6008226 | - | mRNA | protein_coding |
| 477095 | enst00000593558 | sg00000268845 | ac025278.1-201 | 19 | 6953211 | 6954904 | + | lnc_RNA | lncrna |
| -477670 | enst00000590778 | sg00000087903 | rfx2-216 | 19 | 5994816 | 5997373 | - | lnc_RNA | retained_intron |
| -496640 | enst00000587836 | sg00000266983 | ac011444.1-201 | 19 | 5978403 | 6020363 | + | lnc_RNA | lncrna |
| -496901 | enst00000587479 | sg00000031823 | ranbp3-211 | 19 | 5917640 | 5978142 | - | mRNA | protein_coding |
| -496903 | enst00000340578 | sg00000031823 | ranbp3-202 | 19 | 5916139 | 5978140 | - | mRNA | protein_coding |
| -496903 | enst00000591736 | sg00000031823 | ranbp3-223 | 19 | 5925652 | 5978140 | - | mRNA | protein_coding |
| -496903 | enst00000588879 | sg00000031823 | ranbp3-215 | 19 | 5928062 | 5978140 | - | lnc_RNA | processed_transcript |
| -496903 | enst00000587463 | sg00000031823 | ranbp3-210 | 19 | 5931501 | 5978140 | - | mRNA | nonsense_mediated_decay |
| -496930 | enst00000587159 | sg00000031823 | ranbp3-207 | 19 | 5928280 | 5978113 | - | lnc_RNA | processed_transcript |
| -496935 | enst00000439268 | sg00000031823 | ranbp3-203 | 19 | 5916139 | 5978108 | - | mRNA | protein_coding |
| -496946 | enst00000591124 | sg00000031823 | ranbp3-221 | 19 | 5932452 | 5978097 | - | lnc_RNA | processed_transcript |
| -496946 | enst00000590953 | sg00000031823 | ranbp3-219 | 19 | 5928016 | 5978097 | - | lnc_RNA | processed_transcript |
| -496947 | enst00000590623 | sg00000031823 | ranbp3-218 | 19 | 5924827 | 5978096 | - | mRNA | protein_coding |
| -496950 | enst00000585339 | sg00000031823 | ranbp3-204 | 19 | 5932452 | 5978093 | - | mRNA | nonsense_mediated_decay |
| -496950 | enst00000592266 | sg00000031823 | ranbp3-227 | 19 | 5950577 | 5978093 | - | lnc_RNA | retained_intron |
| -496950 | enst00000591092 | sg00000031823 | ranbp3-220 | 19 | 5917323 | 5978093 | - | mRNA | protein_coding |
| -496950 | enst00000591333 | sg00000031823 | ranbp3-222 | 19 | 5941671 | 5978093 | - | mRNA | protein_coding |
| -496950 | enst00000586117 | sg00000031823 | ranbp3-205 | 19 | 5931451 | 5978093 | - | lnc_RNA | processed_transcript |
| -496950 | enst00000589886 | sg00000031823 | ranbp3-217 | 19 | 5933420 | 5978093 | - | lnc_RNA | processed_transcript |
| -496950 | enst00000589353 | sg00000031823 | ranbp3-216 | 19 | 5931496 | 5978093 | - | mRNA | nonsense_mediated_decay |
| -496950 | enst00000588010 | sg00000031823 | ranbp3-214 | 19 | 5931513 | 5978093 | - | mRNA | nonsense_mediated_decay |
| -496950 | enst00000587263 | sg00000031823 | ranbp3-208 | 19 | 5933474 | 5978093 | - | mRNA | nonsense_mediated_decay |
| -496955 | enst00000592133 | sg00000031823 | ranbp3-225 | 19 | 5933412 | 5978088 | - | mRNA | nonsense_mediated_decay |
| -496955 | enst00000587956 | sg00000031823 | ranbp3-213 | 19 | 5941621 | 5978088 | - | lnc_RNA | processed_transcript |
| -496957 | enst00000034275 | sg00000031823 | ranbp3-201 | 19 | 5917352 | 5978086 | - | mRNA | protein_coding |
| -496958 | enst00000591881 | sg00000031823 | ranbp3-224 | 19 | 5933417 | 5978085 | - | lnc_RNA | processed_transcript |
| -496958 | enst00000592771 | sg00000031823 | ranbp3-229 | 19 | 5917316 | 5978085 | - | mRNA | nonsense_mediated_decay |
| -496964 | enst00000592621 | sg00000031823 | ranbp3-228 | 19 | 5923194 | 5978079 | - | mRNA | protein_coding |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc