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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #151 | 2 | 219447906 | 219449258 | 1352 | 3 | 41 | 1.82039e-15 | 1.19893e-13 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 1412 | enst00000462545 | sg00000072195 | speg-213 | 2 | 219450670 | 219466861 | + | lnc_RNA | processed_transcript |
| -2279 | enst00000485813 | sg00000072195 | speg-218 | 2 | 219445627 | 219493593 | + | lnc_RNA | processed_transcript |
| -2326 | enst00000491248 | sg00000072195 | speg-219 | 2 | 219445580 | 219448455 | + | lnc_RNA | processed_transcript |
| -2355 | enst00000497065 | sg00000072195 | speg-221 | 2 | 219445551 | 219448395 | + | lnc_RNA | processed_transcript |
| 2483 | enst00000463218 | sg00000072195 | speg-214 | 2 | 219451741 | 219464667 | + | lnc_RNA | processed_transcript |
| -2861 | enst00000409595 | sg00000072195 | speg-207 | 2 | 219445045 | 219451783 | + | mRNA | nonsense_mediated_decay |
| -3249 | enst00000451076 | sg00000072195 | speg-211 | 2 | 219444657 | 219448158 | + | mRNA | protein_coding |
| -4232 | enst00000464989 | sg00000072195 | speg-215 | 2 | 219443674 | 219466861 | + | lnc_RNA | retained_intron |
| -5857 | enst00000420132 | sg00000072195 | speg-208 | 2 | 219442049 | 219444915 | + | mRNA | nonsense_mediated_decay |
| -5859 | enst00000452101 | sg00000072195 | speg-212 | 2 | 219442047 | 219448191 | + | mRNA | nonsense_mediated_decay |
| -5861 | enst00000396698 | sg00000072195 | speg-205 | 2 | 219442045 | 219466860 | + | mRNA | protein_coding |
| -5883 | enst00000431523 | sg00000072195 | speg-209 | 2 | 219442023 | 219448515 | + | mRNA | protein_coding |
| -5890 | enst00000403148 | sg00000072195 | speg-206 | 2 | 219442016 | 219444844 | + | mRNA | nonsense_mediated_decay |
| -6390 | enst00000435853 | sg00000072195 | speg-210 | 2 | 219441516 | 219448171 | + | mRNA | protein_coding |
| -10631 | enst00000498378 | sg00000072195 | speg-222 | 2 | 219437275 | 219466861 | + | lnc_RNA | processed_transcript |
| 11508 | enst00000396688 | sg00000072195 | speg-203 | 2 | 219460766 | 219466841 | + | mRNA | protein_coding |
| 11964 | enst00000496786 | sg00000072195 | speg-220 | 2 | 219461222 | 219464654 | + | lnc_RNA | processed_transcript |
| 11982 | enst00000475921 | sg00000072195 | speg-216 | 2 | 219461240 | 219466861 | + | lnc_RNA | retained_intron |
| 11997 | enst00000396686 | sg00000072195 | speg-202 | 2 | 219461255 | 219466655 | + | mRNA | protein_coding |
| 12127 | enst00000396689 | sg00000072195 | speg-204 | 2 | 219461385 | 219466862 | + | mRNA | protein_coding |
| -13063 | enst00000312358 | sg00000072195 | speg-201 | 2 | 219434843 | 219493629 | + | mRNA | protein_coding |
| -20429 | enst00000623864 | sg00000280323 | ac053503.5-201 | 2 | 219427477 | 219429319 | + | unconfirmed_transcript | tec |
| -21722 | enst00000431827 | sg00000234638 | ac053503.3-201 | 2 | 219425071 | 219426184 | - | lnc_RNA | lncrna |
| -22386 | enst00000483395 | sg00000175084 | des-203 | 2 | 219425520 | 219426184 | + | lnc_RNA | retained_intron |
| 22404 | enst00000485069 | sg00000072195 | speg-217 | 2 | 219471662 | 219474378 | + | lnc_RNA | retained_intron |
| -27784 | enst00000492726 | sg00000175084 | des-204 | 2 | 219420122 | 219423843 | + | lnc_RNA | retained_intron |
| -27861 | enst00000477226 | sg00000175084 | des-202 | 2 | 219420045 | 219423820 | + | lnc_RNA | retained_intron |
| -29529 | enst00000373960 | sg00000175084 | des-201 | 2 | 219418377 | 219426734 | + | mRNA | protein_coding |
| 42609 | enst00000412982 | sg00000286143 | ac053503.6-201 | 2 | 219491867 | 219498244 | + | mRNA | protein_coding |
| 46867 | enst00000651166 | sg00000286095 | spegnb-203 | 2 | 219496125 | 219498287 | + | mRNA | protein_coding |
| 47097 | enst00000617028 | sg00000286095 | spegnb-202 | 2 | 219496355 | 219498287 | + | mRNA | protein_coding |
| -47884 | enst00000457935 | sg00000123992 | dnpep-209 | 2 | 219381998 | 219400022 | - | mRNA | protein_coding |
| -47899 | enst00000434339 | sg00000123992 | dnpep-208 | 2 | 219385659 | 219400007 | - | mRNA | protein_coding |
| -47899 | enst00000523282 | sg00000123992 | dnpep-220 | 2 | 219374194 | 219400007 | - | mRNA | protein_coding |
| -47900 | enst00000519698 | sg00000123992 | dnpep-215 | 2 | 219386682 | 219400006 | - | mRNA | nonsense_mediated_decay |
| -47925 | enst00000519905 | sg00000123992 | dnpep-216 | 2 | 219386687 | 219399981 | - | mRNA | protein_coding |
| 48433 | enst00000475104 | sg00000286095 | spegnb-201 | 2 | 219497691 | 219498287 | + | lnc_RNA | retained_intron |
| 48988 | enst00000601508 | sg00000268603 | ac053503.4-201 | 2 | 219497611 | 219498246 | - | lnc_RNA | lncrna |
| 49609 | enst00000313597 | sg00000144591 | gmppa-201 | 2 | 219498867 | 219506987 | + | mRNA | protein_coding |
| 49626 | enst00000480506 | sg00000144591 | gmppa-210 | 2 | 219498884 | 219502441 | + | lnc_RNA | retained_intron |
| 49630 | enst00000373917 | sg00000144591 | gmppa-205 | 2 | 219498888 | 219506935 | + | mRNA | protein_coding |
| 49643 | enst00000635609 | sg00000144591 | gmppa-214 | 2 | 219498901 | 219504874 | + | lnc_RNA | processed_transcript |
| 49643 | enst00000358215 | sg00000144591 | gmppa-203 | 2 | 219498901 | 219506989 | + | mRNA | protein_coding |
| 49647 | enst00000443704 | sg00000144591 | gmppa-207 | 2 | 219498905 | 219506933 | + | mRNA | nonsense_mediated_decay |
| 49648 | enst00000373908 | sg00000144591 | gmppa-204 | 2 | 219498906 | 219506988 | + | mRNA | protein_coding |
| 49649 | enst00000455657 | sg00000144591 | gmppa-208 | 2 | 219498907 | 219504132 | + | mRNA | protein_coding |
| 49651 | enst00000435316 | sg00000144591 | gmppa-206 | 2 | 219498909 | 219505555 | + | mRNA | protein_coding |
| 49657 | enst00000341142 | sg00000144591 | gmppa-202 | 2 | 219498915 | 219506987 | + | mRNA | protein_coding |
| 50517 | enst00000481170 | sg00000144591 | gmppa-211 | 2 | 219499775 | 219506987 | + | lnc_RNA | retained_intron |
| 50697 | enst00000622191 | sg00000144591 | gmppa-213 | 2 | 219499955 | 219506988 | + | mRNA | protein_coding |
| 56467 | enst00000480034 | sg00000144591 | gmppa-209 | 2 | 219505725 | 219506694 | + | mRNA | protein_coding |
| 56682 | enst00000496536 | sg00000144591 | gmppa-212 | 2 | 219505940 | 219506422 | + | lnc_RNA | retained_intron |
| -59030 | enst00000373972 | sg00000123992 | dnpep-205 | 2 | 219374194 | 219388876 | - | mRNA | protein_coding |
| -59410 | enst00000420563 | sg00000229525 | ac053503.1-201 | 2 | 219388496 | 219403633 | + | lnc_RNA | lncrna |
| -59891 | enst00000273075 | sg00000123992 | dnpep-201 | 2 | 219373546 | 219388015 | - | mRNA | protein_coding |
| -59974 | enst00000373966 | sg00000123992 | dnpep-204 | 2 | 219374196 | 219387932 | - | mRNA | nonsense_mediated_decay |
| -59977 | enst00000373963 | sg00000123992 | dnpep-203 | 2 | 219374196 | 219387929 | - | mRNA | nonsense_mediated_decay |
| -59999 | enst00000322176 | sg00000123992 | dnpep-202 | 2 | 219385431 | 219387907 | - | mRNA | protein_coding |
| -60072 | enst00000521459 | sg00000123992 | dnpep-218 | 2 | 219383209 | 219387834 | - | mRNA | protein_coding |
| -60088 | enst00000523527 | sg00000123992 | dnpep-221 | 2 | 219386204 | 219387818 | - | lnc_RNA | retained_intron |
| -60110 | enst00000520694 | sg00000123992 | dnpep-217 | 2 | 219373527 | 219387796 | - | mRNA | protein_coding |
| -60114 | enst00000460963 | sg00000123992 | dnpep-210 | 2 | 219384586 | 219387792 | - | lnc_RNA | retained_intron |
| -60559 | enst00000429013 | sg00000123992 | dnpep-206 | 2 | 219383205 | 219387347 | - | mRNA | protein_coding |
| -60560 | enst00000430206 | sg00000123992 | dnpep-207 | 2 | 219385982 | 219387346 | - | mRNA | protein_coding |
| -62072 | enst00000522421 | sg00000123992 | dnpep-219 | 2 | 219385154 | 219385834 | - | lnc_RNA | retained_intron |
| -63333 | enst00000488881 | sg00000123992 | dnpep-213 | 2 | 219381803 | 219384573 | - | lnc_RNA | retained_intron |
| 64912 | enst00000461395 | sg00000072182 | asic4-203 | 2 | 219514170 | 219534058 | + | lnc_RNA | retained_intron |
| 65072 | enst00000347842 | sg00000072182 | asic4-201 | 2 | 219514330 | 219538772 | + | mRNA | protein_coding |
| 65072 | enst00000358078 | sg00000072182 | asic4-202 | 2 | 219514330 | 219538772 | + | mRNA | protein_coding |
| -66016 | enst00000490371 | sg00000123992 | dnpep-214 | 2 | 219374197 | 219381890 | - | lnc_RNA | processed_transcript |
| -66127 | enst00000488051 | sg00000123992 | dnpep-212 | 2 | 219374880 | 219381779 | - | lnc_RNA | retained_intron |
| -66420 | enst00000462779 | sg00000123992 | dnpep-211 | 2 | 219374924 | 219381486 | - | lnc_RNA | retained_intron |
| 67619 | enst00000429882 | sg00000227432 | asic4-as1-201 | 2 | 219482073 | 219516877 | - | lnc_RNA | lncrna |
| 67878 | enst00000474489 | sg00000072182 | asic4-205 | 2 | 219517136 | 219538772 | + | lnc_RNA | retained_intron |
| 67983 | enst00000473709 | sg00000072182 | asic4-204 | 2 | 219517241 | 219533031 | + | lnc_RNA | processed_transcript |
| -88923 | enst00000448375 | sg00000232789 | ac053503.2-201 | 2 | 219358870 | 219358983 | - | pseudogenic_transcript | unprocessed_pseudogene |
| 93839 | enst00000535926 | sg00000123989 | chpf-203 | 2 | 219538948 | 219543097 | - | mRNA | protein_coding |
| 94315 | enst00000373891 | sg00000123989 | chpf-202 | 2 | 219541460 | 219543573 | - | mRNA | protein_coding |
| 94405 | enst00000344458 | sg00000188760 | tmem198-201 | 2 | 219543663 | 219550579 | + | mRNA | protein_coding |
| 94551 | enst00000243776 | sg00000123989 | chpf-201 | 2 | 219538954 | 219543809 | - | mRNA | protein_coding |
| 94748 | enst00000421791 | sg00000188760 | tmem198-203 | 2 | 219544006 | 219548020 | + | mRNA | protein_coding |
| 94765 | enst00000373883 | sg00000188760 | tmem198-202 | 2 | 219544023 | 219550595 | + | mRNA | protein_coding |
| 94792 | enst00000451952 | sg00000188760 | tmem198-204 | 2 | 219544050 | 219547549 | + | mRNA | protein_coding |
| 98400 | enst00000596829 | sg00000268896 | ac009955.3-201 | 2 | 219547211 | 219547658 | - | lnc_RNA | lncrna |
| 99889 | enst00000581997 | sg00000265252 | mir3132-201 | 2 | 219549073 | 219549147 | - | miRNA | mirna |
| 103131 | enst00000462534 | sg00000124006 | obsl1-207 | 2 | 219550729 | 219552389 | - | lnc_RNA | retained_intron |
| 103456 | enst00000489804 | sg00000124006 | obsl1-211 | 2 | 219550729 | 219552714 | - | lnc_RNA | retained_intron |
| 105514 | enst00000596474 | sg00000124006 | obsl1-213 | 2 | 219554229 | 219554772 | - | lnc_RNA | retained_intron |
| 107769 | enst00000472388 | sg00000124006 | obsl1-210 | 2 | 219556242 | 219557027 | - | lnc_RNA | retained_intron |
| 109825 | enst00000597192 | sg00000269068 | ac009955.4-201 | 2 | 219559083 | 219559626 | + | lnc_RNA | lncrna |
| 110173 | enst00000456147 | sg00000124006 | obsl1-205 | 2 | 219555763 | 219559431 | - | mRNA | protein_coding |
| 113254 | enst00000604031 | sg00000124006 | obsl1-215 | 2 | 219555461 | 219562512 | - | mRNA | protein_coding |
| -114729 | enst00000333527 | sg00000182698 | resp18-201 | 2 | 219327407 | 219333177 | - | mRNA | protein_coding |
| -115277 | enst00000392083 | sg00000182698 | resp18-202 | 2 | 219327409 | 219332629 | - | mRNA | protein_coding |
| 116121 | enst00000462385 | sg00000124006 | obsl1-206 | 2 | 219562815 | 219565379 | - | lnc_RNA | retained_intron |
| -116728 | enst00000470719 | sg00000182698 | resp18-203 | 2 | 219327409 | 219331178 | - | lnc_RNA | retained_intron |
| 119904 | enst00000489456 | sg00000123999 | inha-202 | 2 | 219569162 | 219575053 | + | lnc_RNA | processed_transcript |
| 121481 | enst00000465149 | sg00000124006 | obsl1-208 | 2 | 219550729 | 219570739 | - | lnc_RNA | retained_intron |
| 121983 | enst00000373876 | sg00000124006 | obsl1-203 | 2 | 219550756 | 219571241 | - | mRNA | protein_coding |
| 122031 | enst00000603926 | sg00000124006 | obsl1-214 | 2 | 219555166 | 219571289 | - | mRNA | protein_coding |
| 122031 | enst00000373873 | sg00000124006 | obsl1-202 | 2 | 219561722 | 219571289 | - | mRNA | protein_coding |
| 122206 | enst00000289656 | sg00000124006 | obsl1-201 | 2 | 219561747 | 219571464 | - | mRNA | protein_coding |
| 122234 | enst00000465589 | sg00000124006 | obsl1-209 | 2 | 219570221 | 219571492 | - | lnc_RNA | processed_transcript |
| 122281 | enst00000404537 | sg00000124006 | obsl1-204 | 2 | 219550728 | 219571539 | - | mRNA | protein_coding |
| 122601 | enst00000491370 | sg00000124006 | obsl1-212 | 2 | 219570458 | 219571859 | - | lnc_RNA | processed_transcript |
| 123052 | enst00000243786 | sg00000123999 | inha-201 | 2 | 219572310 | 219575711 | + | mRNA | protein_coding |
| -138258 | enst00000446182 | sg00000054356 | ptprn-208 | 2 | 219302487 | 219309648 | - | mRNA | protein_coding |
| -138368 | enst00000451506 | sg00000054356 | ptprn-209 | 2 | 219302744 | 219309538 | - | mRNA | protein_coding |
| -138408 | enst00000409251 | sg00000054356 | ptprn-202 | 2 | 219289623 | 219309498 | - | mRNA | protein_coding |
| -138504 | enst00000484986 | sg00000054356 | ptprn-215 | 2 | 219307483 | 219309402 | - | lnc_RNA | retained_intron |
| -138505 | enst00000295718 | sg00000054356 | ptprn-201 | 2 | 219289623 | 219309401 | - | mRNA | protein_coding |
| -138525 | enst00000606213 | sg00000054356 | ptprn-219 | 2 | 219302768 | 219309381 | - | mRNA | nonsense_mediated_decay |
| -138733 | enst00000440552 | sg00000054356 | ptprn-205 | 2 | 219302618 | 219309173 | - | mRNA | protein_coding |
| -138897 | enst00000412847 | sg00000054356 | ptprn-203 | 2 | 219302485 | 219309009 | - | mRNA | protein_coding |
| -138899 | enst00000442029 | sg00000054356 | ptprn-206 | 2 | 219302685 | 219309007 | - | mRNA | protein_coding |
| -138922 | enst00000423636 | sg00000054356 | ptprn-204 | 2 | 219289841 | 219308984 | - | mRNA | protein_coding |
| -138983 | enst00000468454 | sg00000054356 | ptprn-212 | 2 | 219307018 | 219308923 | - | lnc_RNA | processed_transcript |
| -139566 | enst00000477819 | sg00000054356 | ptprn-214 | 2 | 219307528 | 219308340 | - | lnc_RNA | retained_intron |
| -139709 | enst00000462351 | sg00000054356 | ptprn-211 | 2 | 219289625 | 219308197 | - | lnc_RNA | retained_intron |
| 141726 | enst00000410746 | sg00000222678 | rn7skp213-201 | 2 | 219590687 | 219590984 | - | ncRNA | misc_rna |
| -143765 | enst00000476930 | sg00000054356 | ptprn-213 | 2 | 219302663 | 219304141 | - | lnc_RNA | retained_intron |
| -148334 | enst00000486480 | sg00000054356 | ptprn-216 | 2 | 219297423 | 219299572 | - | lnc_RNA | retained_intron |
| -148414 | enst00000489650 | sg00000054356 | ptprn-217 | 2 | 219297979 | 219299492 | - | lnc_RNA | retained_intron |
| 148599 | enst00000456909 | sg00000144589 | stk11ip-204 | 2 | 219597857 | 219616451 | + | mRNA | protein_coding |
| 148613 | enst00000475843 | sg00000144589 | stk11ip-211 | 2 | 219597871 | 219601840 | + | lnc_RNA | retained_intron |
| 148836 | enst00000456857 | sg00000144589 | stk11ip-203 | 2 | 219598094 | 219602083 | + | mRNA | nonsense_mediated_decay |
| 148881 | enst00000475396 | sg00000144589 | stk11ip-210 | 2 | 219598139 | 219609706 | + | lnc_RNA | retained_intron |
| -148904 | enst00000417355 | sg00000230432 | ac114803.1-201 | 2 | 219299002 | 219304130 | + | lnc_RNA | lncrna |
| 148936 | enst00000468584 | sg00000144589 | stk11ip-208 | 2 | 219598194 | 219602709 | + | lnc_RNA | processed_transcript |
| 149185 | enst00000459692 | sg00000144589 | stk11ip-205 | 2 | 219598443 | 219606058 | + | lnc_RNA | processed_transcript |
| -151148 | enst00000497977 | sg00000054356 | ptprn-218 | 2 | 219290052 | 219296758 | - | lnc_RNA | processed_transcript |
| -151565 | enst00000443981 | sg00000054356 | ptprn-207 | 2 | 219289649 | 219296341 | - | mRNA | protein_coding |
| -153706 | enst00000384914 | sg00000207647 | mir153-1-201 | 2 | 219294111 | 219294200 | - | miRNA | mirna |
| -155010 | enst00000460801 | sg00000054356 | ptprn-210 | 2 | 219289625 | 219292896 | - | lnc_RNA | retained_intron |
| 156249 | enst00000465230 | sg00000144589 | stk11ip-206 | 2 | 219605507 | 219606633 | + | lnc_RNA | retained_intron |
| 156271 | enst00000466648 | sg00000144589 | stk11ip-207 | 2 | 219605529 | 219606857 | + | lnc_RNA | retained_intron |
| 159140 | enst00000473899 | sg00000144589 | stk11ip-209 | 2 | 219608398 | 219609472 | + | lnc_RNA | retained_intron |
| 159888 | enst00000483319 | sg00000144589 | stk11ip-212 | 2 | 219609146 | 219610126 | + | mRNA | protein_coding |
| -162643 | enst00000470530 | sg00000135924 | dnajb2-209 | 2 | 219285263 | 219286200 | + | lnc_RNA | processed_transcript |
| 162785 | enst00000413891 | sg00000144589 | stk11ip-201 | 2 | 219612043 | 219615202 | + | mRNA | nonsense_mediated_decay |
| 163793 | enst00000495941 | sg00000144589 | stk11ip-214 | 2 | 219613051 | 219614720 | + | lnc_RNA | retained_intron |
| 164658 | enst00000447191 | sg00000144589 | stk11ip-202 | 2 | 219613916 | 219615995 | + | mRNA | protein_coding |
| -164842 | enst00000476254 | sg00000135924 | dnajb2-212 | 2 | 219283064 | 219284874 | + | lnc_RNA | retained_intron |
| -165164 | enst00000472019 | sg00000135924 | dnajb2-210 | 2 | 219282742 | 219286839 | + | lnc_RNA | retained_intron |
| -165208 | enst00000473750 | sg00000135924 | dnajb2-211 | 2 | 219282698 | 219285196 | + | lnc_RNA | retained_intron |
| 165548 | enst00000494777 | sg00000144589 | stk11ip-213 | 2 | 219614806 | 219616212 | + | lnc_RNA | retained_intron |
| -167293 | enst00000487855 | sg00000135924 | dnajb2-218 | 2 | 219280613 | 219282665 | + | lnc_RNA | processed_transcript |
| -167986 | enst00000463463 | sg00000135924 | dnajb2-208 | 2 | 219279920 | 219284828 | + | lnc_RNA | processed_transcript |
| -168000 | enst00000485220 | sg00000135924 | dnajb2-217 | 2 | 219279906 | 219281373 | + | lnc_RNA | retained_intron |
| -168318 | enst00000481815 | sg00000135924 | dnajb2-215 | 2 | 219279588 | 219280693 | + | lnc_RNA | retained_intron |
| -168389 | enst00000439026 | sg00000135924 | dnajb2-206 | 2 | 219279517 | 219282929 | + | mRNA | protein_coding |
| -168390 | enst00000442681 | sg00000135924 | dnajb2-207 | 2 | 219279516 | 219282852 | + | mRNA | protein_coding |
| -168441 | enst00000392087 | sg00000135924 | dnajb2-203 | 2 | 219279465 | 219284838 | + | mRNA | protein_coding |
| -168537 | enst00000482988 | sg00000135924 | dnajb2-216 | 2 | 219279369 | 219280170 | + | lnc_RNA | retained_intron |
| -168539 | enst00000480537 | sg00000135924 | dnajb2-214 | 2 | 219279367 | 219282660 | + | lnc_RNA | retained_intron |
| -168539 | enst00000477917 | sg00000135924 | dnajb2-213 | 2 | 219279367 | 219286895 | + | lnc_RNA | retained_intron |
| -168540 | enst00000421532 | sg00000135924 | dnajb2-204 | 2 | 219279366 | 219282105 | + | mRNA | protein_coding |
| -168562 | enst00000392086 | sg00000135924 | dnajb2-202 | 2 | 219279344 | 219286898 | + | mRNA | protein_coding |
| -168564 | enst00000425450 | sg00000135924 | dnajb2-205 | 2 | 219279342 | 219284696 | + | mRNA | protein_coding |
| -168639 | enst00000336576 | sg00000135924 | dnajb2-201 | 2 | 219279267 | 219286900 | + | mRNA | protein_coding |
| -169736 | enst00000427737 | sg00000127824 | tuba4a-205 | 2 | 219251113 | 219278170 | - | mRNA | protein_coding |
| -170030 | enst00000398989 | sg00000127824 | tuba4a-203 | 2 | 219250772 | 219277876 | - | mRNA | protein_coding |
| 177435 | enst00000455896 | sg00000228973 | ac009955.1-201 | 2 | 219625059 | 219626693 | - | lnc_RNA | lncrna |
| 178136 | enst00000373760 | sg00000114923 | slc4a3-204 | 2 | 219627394 | 219641971 | + | mRNA | protein_coding |
| 178307 | enst00000273063 | sg00000114923 | slc4a3-201 | 2 | 219627565 | 219641980 | + | mRNA | protein_coding |
| 178369 | enst00000425141 | sg00000114923 | slc4a3-207 | 2 | 219627627 | 219641728 | + | mRNA | nonsense_mediated_decay |
| 178372 | enst00000358055 | sg00000114923 | slc4a3-203 | 2 | 219627630 | 219641971 | + | mRNA | protein_coding |
| 178403 | enst00000317151 | sg00000114923 | slc4a3-202 | 2 | 219627661 | 219641980 | + | mRNA | protein_coding |
| 179258 | enst00000497589 | sg00000114923 | slc4a3-209 | 2 | 219628516 | 219632418 | + | lnc_RNA | processed_transcript |
| 181872 | enst00000413743 | sg00000114923 | slc4a3-205 | 2 | 219631130 | 219633009 | + | mRNA | protein_coding |
| 182801 | enst00000416910 | sg00000114923 | slc4a3-206 | 2 | 219632059 | 219637795 | + | mRNA | nonsense_mediated_decay |
| 184088 | enst00000444906 | sg00000114923 | slc4a3-208 | 2 | 219633346 | 219635781 | + | mRNA | nonsense_mediated_decay |
| -193298 | enst00000392088 | sg00000127824 | tuba4a-202 | 2 | 219249711 | 219254608 | - | mRNA | protein_coding |
| -193988 | enst00000248437 | sg00000127824 | tuba4a-201 | 2 | 219249710 | 219253918 | - | mRNA | protein_coding |
| -193990 | enst00000475683 | sg00000127824 | tuba4a-209 | 2 | 219251539 | 219253916 | - | lnc_RNA | retained_intron |
| -193990 | enst00000462806 | sg00000127824 | tuba4a-208 | 2 | 219251194 | 219253916 | - | lnc_RNA | retained_intron |
| -194005 | enst00000498660 | sg00000127824 | tuba4a-210 | 2 | 219250729 | 219253901 | - | lnc_RNA | processed_transcript |
| -194552 | enst00000447205 | sg00000127824 | tuba4a-206 | 2 | 219251194 | 219253354 | - | mRNA | protein_coding |
| -194663 | enst00000473885 | sg00000243910 | tuba4b-201 | 2 | 219253243 | 219272011 | + | lnc_RNA | processed_transcript |
| -194663 | enst00000485041 | sg00000243910 | tuba4b-202 | 2 | 219253243 | 219272011 | + | lnc_RNA | processed_transcript |
| -194663 | enst00000490341 | sg00000243910 | tuba4b-203 | 2 | 219253243 | 219272197 | + | mRNA | protein_coding |
| -194761 | enst00000456818 | sg00000127824 | tuba4a-207 | 2 | 219251173 | 219253145 | - | mRNA | protein_coding |
| -194913 | enst00000425551 | sg00000127824 | tuba4a-204 | 2 | 219251587 | 219252993 | - | mRNA | protein_coding |
| 195832 | enst00000597288 | sg00000267919 | ac009955.2-201 | 2 | 219645090 | 219645631 | + | lnc_RNA | lncrna |
| -202010 | enst00000486813 | sg00000115661 | stk16-210 | 2 | 219245896 | 219247534 | + | lnc_RNA | processed_transcript |
| -202010 | enst00000409743 | sg00000115661 | stk16-205 | 2 | 219245896 | 219248702 | + | mRNA | protein_coding |
| -202011 | enst00000478018 | sg00000115661 | stk16-209 | 2 | 219245895 | 219248895 | + | lnc_RNA | retained_intron |
| -202014 | enst00000409260 | sg00000115661 | stk16-202 | 2 | 219245892 | 219248891 | + | mRNA | protein_coding |
| -202348 | enst00000475342 | sg00000115661 | stk16-207 | 2 | 219245558 | 219247631 | + | lnc_RNA | retained_intron |
| -202396 | enst00000496800 | sg00000115661 | stk16-213 | 2 | 219245510 | 219247826 | + | lnc_RNA | retained_intron |
| -202399 | enst00000496443 | sg00000115661 | stk16-212 | 2 | 219245507 | 219248904 | + | lnc_RNA | retained_intron |
| -202423 | enst00000409516 | sg00000115661 | stk16-203 | 2 | 219245483 | 219248746 | + | mRNA | protein_coding |
| -202427 | enst00000396738 | sg00000115661 | stk16-201 | 2 | 219245479 | 219250337 | + | mRNA | protein_coding |
| -202427 | enst00000475696 | sg00000115661 | stk16-208 | 2 | 219245479 | 219248191 | + | lnc_RNA | retained_intron |
| -202427 | enst00000461417 | sg00000115661 | stk16-206 | 2 | 219245479 | 219246967 | + | lnc_RNA | retained_intron |
| -202428 | enst00000392089 | sg00000163521 | glb1l-202 | 2 | 219236771 | 219245478 | - | mRNA | protein_coding |
| -202433 | enst00000491697 | sg00000115661 | stk16-211 | 2 | 219245473 | 219246424 | + | lnc_RNA | retained_intron |
| -202451 | enst00000409638 | sg00000115661 | stk16-204 | 2 | 219245455 | 219250337 | + | mRNA | protein_coding |
| -202462 | enst00000424620 | sg00000163521 | glb1l-204 | 2 | 219243308 | 219245444 | - | mRNA | protein_coding |
| -202462 | enst00000295759 | sg00000163521 | glb1l-201 | 2 | 219236598 | 219245444 | - | mRNA | protein_coding |
| -202465 | enst00000432839 | sg00000163521 | glb1l-206 | 2 | 219243547 | 219245441 | - | mRNA | protein_coding |
| -202500 | enst00000428427 | sg00000163521 | glb1l-205 | 2 | 219242814 | 219245406 | - | mRNA | protein_coding |
| -204292 | enst00000409640 | sg00000163521 | glb1l-203 | 2 | 219236766 | 219243614 | - | mRNA | protein_coding |
| -204308 | enst00000467548 | sg00000163521 | glb1l-210 | 2 | 219242843 | 219243598 | - | lnc_RNA | retained_intron |
| -204308 | enst00000447002 | sg00000163521 | glb1l-208 | 2 | 219239422 | 219243598 | - | mRNA | nonsense_mediated_decay |
| -204534 | enst00000459951 | sg00000163521 | glb1l-209 | 2 | 219240154 | 219243372 | - | lnc_RNA | retained_intron |
| -204722 | enst00000440853 | sg00000163521 | glb1l-207 | 2 | 219239883 | 219243184 | - | mRNA | protein_coding |
| -204800 | enst00000471516 | sg00000163521 | glb1l-211 | 2 | 219240049 | 219243106 | - | lnc_RNA | retained_intron |
| -207672 | enst00000497855 | sg00000163521 | glb1l-212 | 2 | 219236761 | 219240234 | - | lnc_RNA | processed_transcript |
| -212261 | enst00000460966 | sg00000163516 | ankzf1-209 | 2 | 219235645 | 219236651 | + | lnc_RNA | retained_intron |
| -212755 | enst00000483188 | sg00000163516 | ankzf1-219 | 2 | 219235151 | 219235801 | + | lnc_RNA | retained_intron |
| -214239 | enst00000468387 | sg00000163516 | ankzf1-215 | 2 | 219233667 | 219234416 | + | lnc_RNA | retained_intron |
| -215008 | enst00000494886 | sg00000163516 | ankzf1-225 | 2 | 219232898 | 219233766 | + | lnc_RNA | retained_intron |
| -215593 | enst00000490526 | sg00000163516 | ankzf1-222 | 2 | 219232313 | 219233444 | + | lnc_RNA | retained_intron |
| -215724 | enst00000493563 | sg00000163516 | ankzf1-224 | 2 | 219232182 | 219232879 | + | lnc_RNA | retained_intron |
| -216062 | enst00000489580 | sg00000163516 | ankzf1-221 | 2 | 219231844 | 219232759 | + | lnc_RNA | retained_intron |
| -217281 | enst00000465550 | sg00000163516 | ankzf1-213 | 2 | 219230625 | 219234722 | + | lnc_RNA | retained_intron |
| -217670 | enst00000491181 | sg00000163516 | ankzf1-223 | 2 | 219230236 | 219232781 | + | lnc_RNA | retained_intron |
| -217947 | enst00000436226 | sg00000163516 | ankzf1-206 | 2 | 219229959 | 219232270 | + | mRNA | protein_coding |
| -218010 | enst00000447157 | sg00000163516 | ankzf1-207 | 2 | 219229896 | 219232547 | + | mRNA | protein_coding |
| -218018 | enst00000410034 | sg00000163516 | ankzf1-203 | 2 | 219229888 | 219236649 | + | mRNA | protein_coding |
| -218021 | enst00000416565 | sg00000163516 | ankzf1-204 | 2 | 219229885 | 219232013 | + | mRNA | protein_coding |
| -218059 | enst00000486203 | sg00000163516 | ankzf1-220 | 2 | 219229847 | 219233034 | + | lnc_RNA | retained_intron |
| -218068 | enst00000463792 | sg00000163516 | ankzf1-211 | 2 | 219229838 | 219236651 | + | lnc_RNA | retained_intron |
| -218068 | enst00000435521 | sg00000163516 | ankzf1-205 | 2 | 219229838 | 219233116 | + | mRNA | nonsense_mediated_decay |
| -218071 | enst00000496346 | sg00000163516 | ankzf1-226 | 2 | 219229835 | 219234672 | + | lnc_RNA | retained_intron |
| -218079 | enst00000477479 | sg00000163516 | ankzf1-218 | 2 | 219229827 | 219236618 | + | lnc_RNA | retained_intron |
| -218100 | enst00000323348 | sg00000163516 | ankzf1-201 | 2 | 219229806 | 219236679 | + | mRNA | protein_coding |
| -218100 | enst00000475202 | sg00000163516 | ankzf1-217 | 2 | 219229806 | 219232970 | + | lnc_RNA | retained_intron |
| -218100 | enst00000474225 | sg00000163516 | ankzf1-216 | 2 | 219229806 | 219233463 | + | lnc_RNA | retained_intron |
| -218100 | enst00000467884 | sg00000163516 | ankzf1-214 | 2 | 219229806 | 219234349 | + | lnc_RNA | retained_intron |
| -218100 | enst00000461731 | sg00000163516 | ankzf1-210 | 2 | 219229806 | 219234693 | + | lnc_RNA | retained_intron |
| -218119 | enst00000409849 | sg00000163516 | ankzf1-202 | 2 | 219229787 | 219236669 | + | mRNA | protein_coding |
| -218123 | enst00000453432 | sg00000163516 | ankzf1-208 | 2 | 219229783 | 219232666 | + | mRNA | protein_coding |
| -218123 | enst00000464763 | sg00000163516 | ankzf1-212 | 2 | 219229783 | 219230756 | + | lnc_RNA | retained_intron |
| -218189 | enst00000396761 | sg00000198925 | atg9a-202 | 2 | 219219380 | 219229717 | - | mRNA | protein_coding |
| -218267 | enst00000455079 | sg00000198925 | atg9a-215 | 2 | 219225415 | 219229639 | - | lnc_RNA | processed_transcript |
| -218267 | enst00000456708 | sg00000198925 | atg9a-216 | 2 | 219225196 | 219229639 | - | mRNA | nonsense_mediated_decay |
| -218267 | enst00000439812 | sg00000198925 | atg9a-213 | 2 | 219225194 | 219229639 | - | mRNA | protein_coding |
| -218267 | enst00000457841 | sg00000198925 | atg9a-217 | 2 | 219225071 | 219229639 | - | mRNA | protein_coding |
| -218267 | enst00000431715 | sg00000198925 | atg9a-209 | 2 | 219224683 | 219229639 | - | mRNA | protein_coding |
| -218270 | enst00000412355 | sg00000198925 | atg9a-206 | 2 | 219225146 | 219229636 | - | mRNA | nonsense_mediated_decay |
| -218270 | enst00000361242 | sg00000198925 | atg9a-201 | 2 | 219219380 | 219229636 | - | mRNA | protein_coding |
| -218277 | enst00000409422 | sg00000198925 | atg9a-204 | 2 | 219220447 | 219229629 | - | mRNA | protein_coding |
| -218280 | enst00000409033 | sg00000198925 | atg9a-203 | 2 | 219219380 | 219229626 | - | mRNA | nonsense_mediated_decay |
| -218288 | enst00000428226 | sg00000198925 | atg9a-207 | 2 | 219225078 | 219229618 | - | mRNA | protein_coding |
| -218288 | enst00000436856 | sg00000198925 | atg9a-212 | 2 | 219224808 | 219229618 | - | mRNA | protein_coding |
| -218300 | enst00000486766 | sg00000198925 | atg9a-220 | 2 | 219225415 | 219229606 | - | lnc_RNA | retained_intron |
| -218312 | enst00000466217 | sg00000198925 | atg9a-218 | 2 | 219225332 | 219229594 | - | lnc_RNA | retained_intron |
| -218538 | enst00000409618 | sg00000198925 | atg9a-205 | 2 | 219219382 | 219229368 | - | mRNA | protein_coding |
| -218564 | enst00000432520 | sg00000198925 | atg9a-210 | 2 | 219225153 | 219229342 | - | mRNA | protein_coding |
| -218566 | enst00000488833 | sg00000198925 | atg9a-221 | 2 | 219226874 | 219229340 | - | lnc_RNA | processed_transcript |
| -218581 | enst00000443140 | sg00000198925 | atg9a-214 | 2 | 219225494 | 219229325 | - | mRNA | protein_coding |
| -219213 | enst00000434939 | sg00000198925 | atg9a-211 | 2 | 219225506 | 219228693 | - | mRNA | protein_coding |
| -223942 | enst00000429920 | sg00000198925 | atg9a-208 | 2 | 219221274 | 219223964 | - | mRNA | protein_coding |
| -225168 | enst00000446716 | sg00000284820 | ac068946.2-201 | 2 | 219209772 | 219222738 | - | mRNA | nonsense_mediated_decay |
| -225658 | enst00000475339 | sg00000198925 | atg9a-219 | 2 | 219220209 | 219222248 | - | lnc_RNA | retained_intron |
| -228912 | enst00000295750 | sg00000115657 | abcb6-202 | 2 | 219209772 | 219218994 | - | mRNA | protein_coding |
| -228948 | enst00000265316 | sg00000115657 | abcb6-201 | 2 | 219209772 | 219218958 | - | mRNA | protein_coding |
| -229430 | enst00000448398 | sg00000115657 | abcb6-205 | 2 | 219213240 | 219218476 | - | mRNA | nonsense_mediated_decay |
| -229480 | enst00000417678 | sg00000115657 | abcb6-203 | 2 | 219214168 | 219218426 | - | mRNA | nonsense_mediated_decay |
| -229716 | enst00000452545 | sg00000115657 | abcb6-206 | 2 | 219215029 | 219218190 | - | mRNA | nonsense_mediated_decay |
| -231618 | enst00000492953 | sg00000115657 | abcb6-210 | 2 | 219214141 | 219216288 | - | lnc_RNA | retained_intron |
| -232021 | enst00000497882 | sg00000115657 | abcb6-213 | 2 | 219209772 | 219215885 | - | lnc_RNA | retained_intron |
| -232469 | enst00000496984 | sg00000115657 | abcb6-212 | 2 | 219213898 | 219215437 | - | lnc_RNA | retained_intron |
| -233223 | enst00000494639 | sg00000115657 | abcb6-211 | 2 | 219213602 | 219214683 | - | lnc_RNA | retained_intron |
| -234486 | enst00000492543 | sg00000115657 | abcb6-209 | 2 | 219210711 | 219213420 | - | lnc_RNA | retained_intron |
| 235537 | enst00000452903 | sg00000231802 | ac009502.1-201 | 2 | 219684030 | 219684795 | - | pseudogenic_transcript | processed_pseudogene |
| 236123 | enst00000607654 | sg00000227308 | linc02832-204 | 2 | 219685381 | 219687345 | + | lnc_RNA | lncrna |
| 236234 | enst00000606673 | sg00000227308 | linc02832-203 | 2 | 219685492 | 219737937 | + | lnc_RNA | lncrna |
| -236798 | enst00000485773 | sg00000115657 | abcb6-207 | 2 | 219209772 | 219211108 | - | lnc_RNA | retained_intron |
| -236867 | enst00000487380 | sg00000115657 | abcb6-208 | 2 | 219209772 | 219211039 | - | lnc_RNA | retained_intron |
| -236868 | enst00000443805 | sg00000115657 | abcb6-204 | 2 | 219209776 | 219211038 | - | mRNA | nonsense_mediated_decay |
| 237729 | enst00000416861 | sg00000227308 | linc02832-201 | 2 | 219686987 | 219714686 | + | lnc_RNA | lncrna |
| -239448 | enst00000425849 | sg00000158552 | zfand2b-210 | 2 | 219208458 | 219209648 | + | mRNA | protein_coding |
| -240643 | enst00000475533 | sg00000158552 | zfand2b-217 | 2 | 219207263 | 219209494 | + | lnc_RNA | retained_intron |
| -240688 | enst00000469596 | sg00000158552 | zfand2b-216 | 2 | 219207218 | 219208613 | + | lnc_RNA | processed_transcript |
| -240821 | enst00000464902 | sg00000158552 | zfand2b-214 | 2 | 219207085 | 219209647 | + | lnc_RNA | retained_intron |
| -241024 | enst00000448496 | sg00000158552 | zfand2b-213 | 2 | 219206882 | 219208861 | + | mRNA | nonsense_mediated_decay |
| -241026 | enst00000489197 | sg00000158552 | zfand2b-220 | 2 | 219206880 | 219208018 | + | lnc_RNA | retained_intron |
| -241031 | enst00000409319 | sg00000158552 | zfand2b-205 | 2 | 219206875 | 219208262 | + | mRNA | protein_coding |
| -241058 | enst00000468301 | sg00000158552 | zfand2b-215 | 2 | 219206848 | 219208003 | + | lnc_RNA | processed_transcript |
| -241091 | enst00000409217 | sg00000158552 | zfand2b-204 | 2 | 219206815 | 219208696 | + | mRNA | protein_coding |
| -241094 | enst00000486734 | sg00000158552 | zfand2b-219 | 2 | 219206812 | 219208875 | + | lnc_RNA | retained_intron |
| -241097 | enst00000409336 | sg00000158552 | zfand2b-206 | 2 | 219206809 | 219209418 | + | mRNA | protein_coding |
| -241099 | enst00000409412 | sg00000158552 | zfand2b-207 | 2 | 219206807 | 219208116 | + | mRNA | protein_coding |
| -241099 | enst00000476713 | sg00000158552 | zfand2b-218 | 2 | 219206807 | 219207776 | + | lnc_RNA | retained_intron |
| -241099 | enst00000409097 | sg00000158552 | zfand2b-202 | 2 | 219206807 | 219209606 | + | mRNA | protein_coding |
| -241102 | enst00000422255 | sg00000158552 | zfand2b-209 | 2 | 219206804 | 219208540 | + | mRNA | protein_coding |
| -241113 | enst00000409594 | sg00000158552 | zfand2b-208 | 2 | 219206793 | 219209647 | + | mRNA | protein_coding |
| -241122 | enst00000444522 | sg00000158552 | zfand2b-212 | 2 | 219206784 | 219209651 | + | mRNA | protein_coding |
| -241122 | enst00000621130 | sg00000158552 | zfand2b-221 | 2 | 219206784 | 219209651 | + | mRNA | protein_coding |
| -241122 | enst00000409206 | sg00000158552 | zfand2b-203 | 2 | 219206784 | 219208900 | + | mRNA | protein_coding |
| -241124 | enst00000289528 | sg00000158552 | zfand2b-201 | 2 | 219206782 | 219209648 | + | mRNA | protein_coding |
| -247872 | enst00000657417 | sg00000287529 | ac068946.3-201 | 2 | 219198640 | 219200034 | - | lnc_RNA | lncrna |
| 248541 | enst00000442836 | sg00000223903 | rpl23p4-201 | 2 | 219697799 | 219698214 | + | pseudogenic_transcript | processed_pseudogene |
| -252669 | enst00000436556 | sg00000158552 | zfand2b-211 | 2 | 219195237 | 219207421 | + | mRNA | protein_coding |
| -266228 | enst00000420189 | sg00000144567 | retreg2-202 | 2 | 219181678 | 219183800 | + | mRNA | protein_coding |
| -267238 | enst00000481925 | sg00000144567 | retreg2-210 | 2 | 219180668 | 219181693 | + | lnc_RNA | retained_intron |
| -268920 | enst00000465672 | sg00000144567 | retreg2-209 | 2 | 219178986 | 219180239 | + | lnc_RNA | retained_intron |
| -269179 | enst00000452022 | sg00000144567 | retreg2-206 | 2 | 219178727 | 219181663 | + | mRNA | protein_coding |
| -269192 | enst00000430747 | sg00000144567 | retreg2-204 | 2 | 219178714 | 219180750 | + | mRNA | protein_coding |
| -269629 | enst00000452293 | sg00000144567 | retreg2-207 | 2 | 219178277 | 219180754 | + | mRNA | nonsense_mediated_decay |
| -269631 | enst00000430297 | sg00000144567 | retreg2-203 | 2 | 219178275 | 219185475 | + | mRNA | protein_coding |
| -269679 | enst00000273048 | sg00000144567 | retreg2-201 | 2 | 219178227 | 219183492 | + | mRNA | nonsense_mediated_decay |
| -269800 | enst00000409789 | sg00000115649 | cnppd1-202 | 2 | 219172174 | 219178106 | - | mRNA | protein_coding |
| -269983 | enst00000443757 | sg00000144567 | retreg2-205 | 2 | 219177923 | 219180751 | + | mRNA | protein_coding |
| -270593 | enst00000453038 | sg00000115649 | cnppd1-204 | 2 | 219172894 | 219177313 | - | mRNA | protein_coding |
| -270981 | enst00000360507 | sg00000115649 | cnppd1-201 | 2 | 219171897 | 219176925 | - | mRNA | protein_coding |
| -271008 | enst00000451647 | sg00000115649 | cnppd1-203 | 2 | 219173051 | 219176898 | - | mRNA | protein_coding |
| -271681 | enst00000458520 | sg00000144567 | retreg2-208 | 2 | 219176225 | 219182120 | + | mRNA | protein_coding |
| -277079 | enst00000498327 | sg00000280537 | ac068946.1-201 | 2 | 219075329 | 219170827 | - | lnc_RNA | retained_intron |
| -277811 | enst00000295738 | sg00000213901 | slc23a3-201 | 2 | 219161465 | 219170095 | - | mRNA | protein_coding |
| -277849 | enst00000497918 | sg00000213901 | slc23a3-210 | 2 | 219164578 | 219170057 | - | lnc_RNA | retained_intron |
| -277871 | enst00000421779 | sg00000213901 | slc23a3-205 | 2 | 219168784 | 219170035 | - | lnc_RNA | processed_transcript |
| -277873 | enst00000465580 | sg00000213901 | slc23a3-209 | 2 | 219168637 | 219170033 | - | lnc_RNA | retained_intron |
| -277874 | enst00000455516 | sg00000213901 | slc23a3-207 | 2 | 219161766 | 219170032 | - | mRNA | protein_coding |
| -277877 | enst00000461812 | sg00000213901 | slc23a3-208 | 2 | 219169355 | 219170029 | - | lnc_RNA | retained_intron |
| -277889 | enst00000409878 | sg00000213901 | slc23a3-203 | 2 | 219161765 | 219170017 | - | mRNA | protein_coding |
| -277902 | enst00000430764 | sg00000213901 | slc23a3-206 | 2 | 219168652 | 219170004 | - | mRNA | protein_coding |
| -277916 | enst00000409370 | sg00000213901 | slc23a3-202 | 2 | 219168214 | 219169990 | - | mRNA | protein_coding |
| -277919 | enst00000318673 | sg00000280537 | ac068946.1-202 | 2 | 219075973 | 219169987 | - | mRNA | nonsense_mediated_decay |
| -278344 | enst00000414999 | sg00000213901 | slc23a3-204 | 2 | 219167929 | 219169562 | - | mRNA | nonsense_mediated_decay |
| 280852 | enst00000442416 | sg00000227308 | linc02832-202 | 2 | 219730110 | 219737742 | + | lnc_RNA | lncrna |
| -287041 | enst00000450447 | sg00000187736 | nhej1-205 | 2 | 219146707 | 219160865 | - | mRNA | nonsense_mediated_decay |
| -287053 | enst00000356853 | sg00000187736 | nhej1-201 | 2 | 219075321 | 219160853 | - | mRNA | protein_coding |
| -287108 | enst00000418099 | sg00000187736 | nhej1-203 | 2 | 219075329 | 219160798 | - | mRNA | nonsense_mediated_decay |
| -287144 | enst00000481764 | sg00000187736 | nhej1-207 | 2 | 219158820 | 219160762 | - | lnc_RNA | processed_transcript |
| -287351 | enst00000457600 | sg00000187736 | nhej1-206 | 2 | 219078107 | 219160555 | - | mRNA | protein_coding |
| -289544 | enst00000409720 | sg00000187736 | nhej1-202 | 2 | 219075317 | 219158362 | - | mRNA | protein_coding |
| -290285 | enst00000426304 | sg00000187736 | nhej1-204 | 2 | 219076303 | 219157621 | - | mRNA | protein_coding |
| -322246 | enst00000483627 | sg00000187736 | nhej1-208 | 2 | 219076378 | 219125660 | - | lnc_RNA | processed_transcript |
| -322254 | enst00000491159 | sg00000187736 | nhej1-209 | 2 | 219076318 | 219125652 | - | lnc_RNA | processed_transcript |
| -323142 | enst00000494211 | sg00000187736 | nhej1-210 | 2 | 219076292 | 219124764 | - | lnc_RNA | processed_transcript |
| -345472 | enst00000487337 | sg00000240317 | rn7sl764p-201 | 2 | 219102434 | 219102719 | + | ncRNA | misc_rna |
| -378097 | enst00000607956 | sg00000272644 | ac097468.3-201 | 2 | 219069354 | 219069809 | - | lnc_RNA | lncrna |
| -382598 | enst00000666065 | sg00000286606 | ac097468.4-201 | 2 | 219065308 | 219070022 | + | lnc_RNA | lncrna |
| -386985 | enst00000295731 | sg00000163501 | ihh-201 | 2 | 219054424 | 219060921 | - | mRNA | protein_coding |
| -389156 | enst00000583592 | sg00000264755 | mir3131-201 | 2 | 219058688 | 219058750 | - | miRNA | mirna |
| -406379 | enst00000462848 | sg00000181378 | cfap65-211 | 2 | 219026548 | 219041527 | - | lnc_RNA | retained_intron |
| -406383 | enst00000295729 | sg00000181378 | cfap65-201 | 2 | 219033692 | 219041523 | - | mRNA | protein_coding |
| -406390 | enst00000436631 | sg00000181378 | cfap65-206 | 2 | 219032568 | 219041516 | - | mRNA | protein_coding |
| -406390 | enst00000457968 | sg00000181378 | cfap65-209 | 2 | 219031106 | 219041516 | - | mRNA | protein_coding |
| -406390 | enst00000410037 | sg00000181378 | cfap65-204 | 2 | 219027080 | 219041516 | - | mRNA | protein_coding |
| -406390 | enst00000409865 | sg00000181378 | cfap65-203 | 2 | 219027063 | 219041516 | - | mRNA | protein_coding |
| -406390 | enst00000341552 | sg00000181378 | cfap65-202 | 2 | 219002846 | 219041516 | - | mRNA | protein_coding |
| -406402 | enst00000458526 | sg00000181378 | cfap65-210 | 2 | 219035484 | 219041504 | - | mRNA | protein_coding |
| -408691 | enst00000463683 | sg00000181378 | cfap65-212 | 2 | 219026647 | 219039215 | - | lnc_RNA | retained_intron |
| -408849 | enst00000453220 | sg00000181378 | cfap65-208 | 2 | 219002847 | 219039057 | - | mRNA | protein_coding |
| -408900 | enst00000441968 | sg00000181378 | cfap65-207 | 2 | 219026550 | 219039006 | - | mRNA | protein_coding |
| -418105 | enst00000474601 | sg00000181378 | cfap65-213 | 2 | 219026550 | 219029801 | - | lnc_RNA | retained_intron |
| -428202 | enst00000413871 | sg00000181378 | cfap65-205 | 2 | 219018256 | 219019704 | - | mRNA | protein_coding |
| -445691 | enst00000441450 | sg00000224090 | ac097468.1-201 | 2 | 219002215 | 219015721 | + | lnc_RNA | lncrna |
| -446198 | enst00000362103 | sg00000198973 | mir375-201 | 2 | 219001645 | 219001708 | - | miRNA | mirna |
| -454484 | enst00000295728 | sg00000163499 | cryba2-201 | 2 | 218990190 | 218993422 | - | mRNA | protein_coding |
| -454485 | enst00000392096 | sg00000163499 | cryba2-202 | 2 | 218990189 | 218993421 | - | mRNA | protein_coding |
| -454505 | enst00000453769 | sg00000163499 | cryba2-203 | 2 | 218990912 | 218993401 | - | mRNA | protein_coding |
| -454728 | enst00000490678 | sg00000163499 | cryba2-205 | 2 | 218991847 | 218993178 | - | lnc_RNA | retained_intron |
| 455665 | enst00000438659 | sg00000228909 | linc01803-201 | 2 | 219903900 | 219904923 | - | lnc_RNA | lncrna |
| -456410 | enst00000487181 | sg00000163499 | cryba2-204 | 2 | 218990190 | 218991496 | - | lnc_RNA | processed_transcript |
| -456699 | enst00000496566 | sg00000163499 | cryba2-206 | 2 | 218990190 | 218991207 | - | lnc_RNA | retained_intron |
| 457307 | enst00000581624 | sg00000266518 | mir4268-201 | 2 | 219906502 | 219906565 | - | miRNA | mirna |
| -462722 | enst00000295727 | sg00000163497 | fev-201 | 2 | 218981087 | 218985184 | - | mRNA | protein_coding |
| -463431 | enst00000470119 | sg00000163497 | fev-202 | 2 | 218981958 | 218984475 | - | lnc_RNA | retained_intron |
| 463576 | enst00000650939 | sg00000286199 | ac008281.1-201 | 2 | 219904983 | 219912834 | - | lnc_RNA | lncrna |
| -470081 | enst00000628185 | sg00000236445 | linc00608-207 | 2 | 218977825 | 218979609 | + | lnc_RNA | lncrna |
| -470364 | enst00000626251 | sg00000236445 | linc00608-205 | 2 | 218977542 | 218979620 | + | lnc_RNA | lncrna |
| -471622 | enst00000627043 | sg00000236445 | linc00608-206 | 2 | 218976284 | 218989940 | + | lnc_RNA | lncrna |
| -471622 | enst00000432733 | sg00000236445 | linc00608-202 | 2 | 218976284 | 218979660 | + | lnc_RNA | lncrna |
| -471631 | enst00000654913 | sg00000236445 | linc00608-208 | 2 | 218976275 | 218977922 | + | lnc_RNA | lncrna |
| -471673 | enst00000598002 | sg00000236445 | linc00608-203 | 2 | 218976233 | 218976747 | + | lnc_RNA | lncrna |
| -472307 | enst00000600415 | sg00000236445 | linc00608-204 | 2 | 218975599 | 218976736 | + | lnc_RNA | lncrna |
| -472513 | enst00000419101 | sg00000236445 | linc00608-201 | 2 | 218975393 | 218977966 | + | lnc_RNA | lncrna |
| -486003 | enst00000429343 | sg00000235024 | ac097468.2-201 | 2 | 218944629 | 218961903 | - | lnc_RNA | lncrna |
| -488240 | enst00000302625 | sg00000171450 | cdk5r2-201 | 2 | 218959666 | 218962155 | + | mRNA | protein_coding |
| -493856 | enst00000432100 | sg00000224928 | krt8p30-201 | 2 | 218953401 | 218954050 | - | pseudogenic_transcript | processed_pseudogene |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc