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CpG interval report generated on 20/05/20 with pycoMeth 0.4.6
Interval details
| pvalue rank | chromosome | start | end | length | number of samples | number of CpGs | pvalue | adjusted pvalue |
|---|---|---|---|---|---|---|---|---|
| #148 | 5 | 179974119 | 179975388 | 1269 | 3 | 34 | 1.10189e-15 | 7.40428e-14 |
Methylation log-likelihood ratio by CpG position
Distribution of CpG methylation log-likelihood ratio by sample
Closest transcripts TSS
| distance to tss | transcript id | gene id | transcript name | chromosome | start | end | strand | feature type | transcript biotype |
|---|---|---|---|---|---|---|---|---|---|
| 0 | enst00000649184 | sg00000285865 | ac010285.3-201 | 5 | 179974584 | 179980186 | + | lnc_RNA | lncrna |
| 2899 | enst00000523487 | sg00000113269 | rnf130-208 | 5 | 179976774 | 179978287 | - | lnc_RNA | retained_intron |
| 5130 | enst00000519708 | sg00000113269 | rnf130-202 | 5 | 179966983 | 179980518 | - | lnc_RNA | retained_intron |
| -10176 | enst00000521901 | sg00000113269 | rnf130-206 | 5 | 179955480 | 179963943 | - | lnc_RNA | retained_intron |
| -10504 | enst00000510240 | sg00000249412 | ac010285.1-201 | 5 | 179963615 | 179964419 | + | lnc_RNA | lncrna |
| -17603 | enst00000520564 | sg00000113269 | rnf130-203 | 5 | 179955480 | 179956516 | - | lnc_RNA | processed_transcript |
| -33987 | enst00000511668 | sg00000249876 | ac010285.2-201 | 5 | 179939457 | 179940132 | - | pseudogenic_transcript | processed_pseudogene |
| -39923 | enst00000470580 | sg00000242979 | rps15ap18-201 | 5 | 179933805 | 179934196 | - | pseudogenic_transcript | processed_pseudogene |
| 40009 | enst00000362125 | sg00000198995 | mir340-201 | 5 | 180015303 | 180015397 | - | miRNA | mirna |
| -66260 | enst00000356834 | sg00000197226 | tbc1d9b-202 | 5 | 179862066 | 179907859 | - | mRNA | protein_coding |
| -66263 | enst00000355235 | sg00000197226 | tbc1d9b-201 | 5 | 179862066 | 179907856 | - | mRNA | protein_coding |
| -66267 | enst00000522224 | sg00000197226 | tbc1d9b-216 | 5 | 179893425 | 179907852 | - | mRNA | nonsense_mediated_decay |
| -66298 | enst00000630103 | sg00000197226 | tbc1d9b-220 | 5 | 179894541 | 179907821 | - | mRNA | protein_coding |
| -79661 | enst00000517782 | sg00000197226 | tbc1d9b-203 | 5 | 179888103 | 179894458 | - | lnc_RNA | processed_transcript |
| -80882 | enst00000522029 | sg00000197226 | tbc1d9b-214 | 5 | 179884369 | 179893237 | - | lnc_RNA | processed_transcript |
| -80886 | enst00000524222 | sg00000197226 | tbc1d9b-219 | 5 | 179863404 | 179893233 | - | mRNA | protein_coding |
| -85805 | enst00000518120 | sg00000197226 | tbc1d9b-206 | 5 | 179887671 | 179888314 | - | lnc_RNA | processed_transcript |
| -94096 | enst00000518115 | sg00000197226 | tbc1d9b-205 | 5 | 179879046 | 179880023 | - | lnc_RNA | retained_intron |
| -94416 | enst00000522472 | sg00000197226 | tbc1d9b-217 | 5 | 179862373 | 179879703 | - | mRNA | protein_coding |
| -94713 | enst00000518459 | sg00000197226 | tbc1d9b-207 | 5 | 179874927 | 179879406 | - | lnc_RNA | retained_intron |
| 96333 | enst00000522208 | sg00000113269 | rnf130-207 | 5 | 179911651 | 180071721 | - | mRNA | protein_coding |
| 96371 | enst00000521389 | sg00000113269 | rnf130-205 | 5 | 179955067 | 180071759 | - | mRNA | protein_coding |
| 96713 | enst00000261947 | sg00000113269 | rnf130-201 | 5 | 179955453 | 180072101 | - | mRNA | protein_coding |
| 96725 | enst00000520911 | sg00000113269 | rnf130-204 | 5 | 179955480 | 180072113 | - | mRNA | nonsense_mediated_decay |
| -100984 | enst00000521669 | sg00000197226 | tbc1d9b-213 | 5 | 179872416 | 179873135 | - | lnc_RNA | retained_intron |
| -101845 | enst00000521469 | sg00000197226 | tbc1d9b-212 | 5 | 179862738 | 179872274 | - | lnc_RNA | retained_intron |
| -102303 | enst00000519757 | sg00000197226 | tbc1d9b-209 | 5 | 179867304 | 179871816 | - | lnc_RNA | retained_intron |
| -102314 | enst00000519746 | sg00000197226 | tbc1d9b-208 | 5 | 179862066 | 179871805 | - | mRNA | protein_coding |
| -102618 | enst00000522180 | sg00000197226 | tbc1d9b-215 | 5 | 179867241 | 179871501 | - | lnc_RNA | processed_transcript |
| -103419 | enst00000522921 | sg00000197226 | tbc1d9b-218 | 5 | 179867805 | 179870700 | - | lnc_RNA | retained_intron |
| -103711 | enst00000520912 | sg00000197226 | tbc1d9b-211 | 5 | 179868058 | 179870408 | - | lnc_RNA | retained_intron |
| 106303 | enst00000624942 | sg00000278965 | ac122713.2-201 | 5 | 180078357 | 180081691 | - | unconfirmed_transcript | tec |
| -106817 | enst00000520794 | sg00000197226 | tbc1d9b-210 | 5 | 179862743 | 179867302 | - | lnc_RNA | retained_intron |
| -107091 | enst00000518085 | sg00000197226 | tbc1d9b-204 | 5 | 179862066 | 179867028 | - | lnc_RNA | processed_transcript |
| 111650 | enst00000518368 | sg00000253480 | ac122713.1-201 | 5 | 180085717 | 180087038 | - | pseudogenic_transcript | processed_pseudogene |
| -111946 | enst00000519398 | sg00000161010 | mrnip-210 | 5 | 179853283 | 179862173 | - | lnc_RNA | retained_intron |
| -115106 | enst00000499601 | sg00000245317 | ac008393.1-201 | 5 | 179859013 | 179861283 | + | lnc_RNA | lncrna |
| -115259 | enst00000522663 | sg00000161010 | mrnip-219 | 5 | 179835133 | 179858860 | - | mRNA | nonsense_mediated_decay |
| -115273 | enst00000520150 | sg00000161010 | mrnip-211 | 5 | 179840240 | 179858846 | - | lnc_RNA | retained_intron |
| -115275 | enst00000519213 | sg00000161010 | mrnip-208 | 5 | 179844174 | 179858844 | - | mRNA | nonsense_mediated_decay |
| -115275 | enst00000521299 | sg00000161010 | mrnip-215 | 5 | 179837527 | 179858844 | - | mRNA | nonsense_mediated_decay |
| -115275 | enst00000523737 | sg00000161010 | mrnip-222 | 5 | 179840809 | 179858844 | - | mRNA | nonsense_mediated_decay |
| -115280 | enst00000520995 | sg00000161010 | mrnip-214 | 5 | 179840921 | 179858839 | - | mRNA | nonsense_mediated_decay |
| -115281 | enst00000519208 | sg00000161010 | mrnip-207 | 5 | 179840713 | 179858838 | - | mRNA | nonsense_mediated_decay |
| -115285 | enst00000523084 | sg00000161010 | mrnip-220 | 5 | 179837276 | 179858834 | - | mRNA | protein_coding |
| -115302 | enst00000521333 | sg00000161010 | mrnip-216 | 5 | 179837693 | 179858817 | - | mRNA | protein_coding |
| -115302 | enst00000292586 | sg00000161010 | mrnip-201 | 5 | 179837276 | 179858817 | - | mRNA | protein_coding |
| -115310 | enst00000524068 | sg00000161010 | mrnip-224 | 5 | 179841908 | 179858809 | - | mRNA | nonsense_mediated_decay |
| -115311 | enst00000523835 | sg00000161010 | mrnip-223 | 5 | 179842047 | 179858808 | - | mRNA | nonsense_mediated_decay |
| -115311 | enst00000522157 | sg00000161010 | mrnip-218 | 5 | 179842008 | 179858808 | - | mRNA | nonsense_mediated_decay |
| -115311 | enst00000518219 | sg00000161010 | mrnip-204 | 5 | 179837276 | 179858808 | - | mRNA | protein_coding |
| -115311 | enst00000376931 | sg00000161010 | mrnip-202 | 5 | 179837266 | 179858808 | - | mRNA | protein_coding |
| -115311 | enst00000519318 | sg00000161010 | mrnip-209 | 5 | 179847357 | 179858808 | - | lnc_RNA | retained_intron |
| -115313 | enst00000518235 | sg00000161010 | mrnip-205 | 5 | 179836634 | 179858806 | - | mRNA | protein_coding |
| -115313 | enst00000517338 | sg00000161010 | mrnip-203 | 5 | 179851093 | 179858806 | - | lnc_RNA | processed_transcript |
| -115322 | enst00000520698 | sg00000161010 | mrnip-212 | 5 | 179836802 | 179858797 | - | mRNA | protein_coding |
| -126989 | enst00000516393 | sg00000252202 | ac008393.2-201 | 5 | 179847035 | 179847130 | - | ncRNA | misc_rna |
| -128287 | enst00000410516 | sg00000222448 | rn7skp150-201 | 5 | 179845832 | 179846152 | + | ncRNA | misc_rna |
| -129794 | enst00000520900 | sg00000161010 | mrnip-213 | 5 | 179840590 | 179844325 | - | lnc_RNA | retained_intron |
| -129898 | enst00000523267 | sg00000161010 | mrnip-221 | 5 | 179837274 | 179844221 | - | lnc_RNA | processed_transcript |
| -129899 | enst00000521675 | sg00000161010 | mrnip-217 | 5 | 179841269 | 179844220 | - | lnc_RNA | retained_intron |
| -132099 | enst00000610475 | sg00000161010 | mrnip-225 | 5 | 179837277 | 179842020 | - | mRNA | protein_coding |
| -135864 | enst00000518950 | sg00000161010 | mrnip-206 | 5 | 179837143 | 179838255 | - | lnc_RNA | retained_intron |
| 140012 | enst00000519456 | sg00000146090 | rasgef1c-203 | 5 | 180101332 | 180115400 | - | lnc_RNA | processed_transcript |
| -150261 | enst00000466342 | sg00000161011 | sqstm1-206 | 5 | 179823858 | 179833386 | + | lnc_RNA | retained_intron |
| -150554 | enst00000485412 | sg00000161011 | sqstm1-208 | 5 | 179823565 | 179824314 | + | lnc_RNA | retained_intron |
| -151634 | enst00000360718 | sg00000161011 | sqstm1-201 | 5 | 179822485 | 179837255 | + | mRNA | protein_coding |
| -153198 | enst00000510187 | sg00000161011 | sqstm1-213 | 5 | 179820921 | 179837218 | + | mRNA | protein_coding |
| -153214 | enst00000389805 | sg00000161011 | sqstm1-202 | 5 | 179820905 | 179838078 | + | mRNA | protein_coding |
| -153214 | enst00000504627 | sg00000161011 | sqstm1-209 | 5 | 179820905 | 179824057 | + | mRNA | protein_coding |
| -153214 | enst00000453046 | sg00000161011 | sqstm1-204 | 5 | 179820905 | 179823939 | + | mRNA | nonsense_mediated_decay |
| -153234 | enst00000626660 | sg00000161011 | sqstm1-216 | 5 | 179820885 | 179821567 | + | mRNA | protein_coding |
| -153241 | enst00000508284 | sg00000161011 | sqstm1-212 | 5 | 179820878 | 179824237 | + | mRNA | nonsense_mediated_decay |
| -153512 | enst00000464493 | sg00000161011 | sqstm1-205 | 5 | 179820607 | 179824287 | + | lnc_RNA | processed_transcript |
| -155152 | enst00000481335 | sg00000161011 | sqstm1-207 | 5 | 179818967 | 179823968 | + | lnc_RNA | processed_transcript |
| -155241 | enst00000422245 | sg00000161011 | sqstm1-203 | 5 | 179818878 | 179824323 | + | mRNA | protein_coding |
| 159924 | enst00000519883 | sg00000146090 | rasgef1c-204 | 5 | 180118832 | 180135312 | - | lnc_RNA | processed_transcript |
| 161190 | enst00000520209 | sg00000146090 | rasgef1c-205 | 5 | 180100811 | 180136578 | - | mRNA | nonsense_mediated_decay |
| 161388 | enst00000522500 | sg00000146090 | rasgef1c-206 | 5 | 180100808 | 180136776 | - | mRNA | protein_coding |
| -162504 | enst00000512234 | sg00000161011 | sqstm1-214 | 5 | 179811615 | 179813641 | + | lnc_RNA | processed_transcript |
| 162961 | enst00000393371 | sg00000146090 | rasgef1c-202 | 5 | 180100804 | 180138349 | - | mRNA | protein_coding |
| -166795 | enst00000506690 | sg00000161011 | sqstm1-211 | 5 | 179807324 | 179813598 | + | lnc_RNA | processed_transcript |
| -167167 | enst00000518168 | sg00000161013 | mgat4b-203 | 5 | 179801334 | 179806952 | - | lnc_RNA | retained_intron |
| -167253 | enst00000292591 | sg00000161013 | mgat4b-201 | 5 | 179797610 | 179806866 | - | mRNA | protein_coding |
| -167565 | enst00000523329 | sg00000161013 | mgat4b-222 | 5 | 179800938 | 179806554 | - | mRNA | nonsense_mediated_decay |
| -167711 | enst00000514093 | sg00000161011 | sqstm1-215 | 5 | 179806408 | 179825226 | + | mRNA | protein_coding |
| -167721 | enst00000506042 | sg00000161011 | sqstm1-210 | 5 | 179806398 | 179813024 | + | lnc_RNA | processed_transcript |
| -167785 | enst00000523108 | sg00000161013 | mgat4b-221 | 5 | 179799512 | 179806334 | - | mRNA | protein_coding |
| -167789 | enst00000520134 | sg00000161013 | mgat4b-212 | 5 | 179801375 | 179806330 | - | lnc_RNA | processed_transcript |
| -167795 | enst00000519616 | sg00000161013 | mgat4b-208 | 5 | 179801807 | 179806324 | - | lnc_RNA | processed_transcript |
| -167814 | enst00000520019 | sg00000161013 | mgat4b-211 | 5 | 179802313 | 179806305 | - | lnc_RNA | processed_transcript |
| -168734 | enst00000519965 | sg00000161013 | mgat4b-210 | 5 | 179802952 | 179805385 | - | lnc_RNA | processed_transcript |
| -170343 | enst00000521305 | sg00000161013 | mgat4b-217 | 5 | 179800484 | 179803776 | - | lnc_RNA | processed_transcript |
| -171121 | enst00000337755 | sg00000161013 | mgat4b-202 | 5 | 179797597 | 179802998 | - | mRNA | protein_coding |
| -172004 | enst00000520918 | sg00000161013 | mgat4b-215 | 5 | 179799980 | 179802115 | - | mRNA | nonsense_mediated_decay |
| -172210 | enst00000519836 | sg00000161013 | mgat4b-209 | 5 | 179797610 | 179801909 | - | mRNA | protein_coding |
| -172730 | enst00000523382 | sg00000161013 | mgat4b-223 | 5 | 179798165 | 179801389 | - | lnc_RNA | processed_transcript |
| -172752 | enst00000518778 | sg00000161013 | mgat4b-205 | 5 | 179797597 | 179801367 | - | mRNA | protein_coding |
| -173122 | enst00000518702 | sg00000161013 | mgat4b-204 | 5 | 179799296 | 179800997 | - | lnc_RNA | retained_intron |
| -173174 | enst00000518867 | sg00000161013 | mgat4b-206 | 5 | 179798407 | 179800945 | - | mRNA | protein_coding |
| -173180 | enst00000518980 | sg00000161013 | mgat4b-207 | 5 | 179797946 | 179800939 | - | mRNA | protein_coding |
| -173522 | enst00000520875 | sg00000161013 | mgat4b-214 | 5 | 179798165 | 179800597 | - | mRNA | protein_coding |
| -173530 | enst00000520822 | sg00000161013 | mgat4b-213 | 5 | 179799506 | 179800589 | - | lnc_RNA | retained_intron |
| -173688 | enst00000521855 | sg00000161013 | mgat4b-218 | 5 | 179799724 | 179800431 | - | lnc_RNA | retained_intron |
| -174483 | enst00000520969 | sg00000161013 | mgat4b-216 | 5 | 179797671 | 179799636 | - | mRNA | protein_coding |
| -174543 | enst00000522293 | sg00000161013 | mgat4b-219 | 5 | 179797884 | 179799576 | - | lnc_RNA | processed_transcript |
| -175284 | enst00000522451 | sg00000161013 | mgat4b-220 | 5 | 179798106 | 179798835 | - | lnc_RNA | retained_intron |
| -175773 | enst00000408467 | sg00000221394 | mir1229-201 | 5 | 179798278 | 179798346 | - | miRNA | mirna |
| -178564 | enst00000509898 | sg00000213316 | ltc4s-207 | 5 | 179795555 | 179796375 | + | lnc_RNA | retained_intron |
| -178811 | enst00000510544 | sg00000213316 | ltc4s-208 | 5 | 179795308 | 179796314 | + | lnc_RNA | retained_intron |
| -180086 | enst00000486713 | sg00000213316 | ltc4s-205 | 5 | 179794033 | 179796159 | + | mRNA | protein_coding |
| -180106 | enst00000466071 | sg00000213316 | ltc4s-204 | 5 | 179794013 | 179796021 | + | lnc_RNA | retained_intron |
| -180126 | enst00000401985 | sg00000213316 | ltc4s-202 | 5 | 179793993 | 179796510 | + | mRNA | protein_coding |
| -180133 | enst00000292596 | sg00000213316 | ltc4s-201 | 5 | 179793986 | 179796647 | + | mRNA | protein_coding |
| -180134 | enst00000505170 | sg00000213316 | ltc4s-206 | 5 | 179793985 | 179796444 | + | mRNA | nonsense_mediated_decay |
| -180139 | enst00000465572 | sg00000213316 | ltc4s-203 | 5 | 179793980 | 179796647 | + | lnc_RNA | retained_intron |
| -203191 | enst00000511027 | sg00000161021 | maml1-203 | 5 | 179770928 | 179774468 | + | lnc_RNA | retained_intron |
| -205267 | enst00000507385 | sg00000161021 | maml1-202 | 5 | 179768852 | 179773951 | + | lnc_RNA | retained_intron |
| 233757 | enst00000615330 | sg00000146090 | rasgef1c-207 | 5 | 180100796 | 180209145 | - | mRNA | protein_coding |
| 233823 | enst00000361132 | sg00000146090 | rasgef1c-201 | 5 | 180100795 | 180209211 | - | mRNA | protein_coding |
| -241297 | enst00000292599 | sg00000161021 | maml1-201 | 5 | 179732822 | 179777283 | + | mRNA | protein_coding |
| -247414 | enst00000503303 | sg00000127022 | canx-207 | 5 | 179726705 | 179729649 | + | lnc_RNA | processed_transcript |
| -250641 | enst00000505090 | sg00000127022 | canx-210 | 5 | 179723478 | 179726735 | + | lnc_RNA | retained_intron |
| 251612 | enst00000484005 | sg00000229721 | ac104115.1-201 | 5 | 180226378 | 180227000 | - | pseudogenic_transcript | processed_pseudogene |
| -264425 | enst00000506298 | sg00000127022 | canx-211 | 5 | 179709694 | 179716281 | + | lnc_RNA | retained_intron |
| -265832 | enst00000508787 | sg00000127022 | canx-214 | 5 | 179708287 | 179716201 | + | mRNA | protein_coding |
| 267512 | enst00000520212 | sg00000050748 | mapk9-209 | 5 | 180236526 | 180242900 | - | lnc_RNA | retained_intron |
| -267812 | enst00000503126 | sg00000127022 | canx-206 | 5 | 179706307 | 179716241 | + | lnc_RNA | processed_transcript |
| -273933 | enst00000509563 | sg00000127022 | canx-215 | 5 | 179700186 | 179705777 | + | mRNA | protein_coding |
| -275093 | enst00000510810 | sg00000127022 | canx-216 | 5 | 179699026 | 179709949 | + | mRNA | protein_coding |
| -275131 | enst00000514032 | sg00000127022 | canx-218 | 5 | 179698988 | 179728682 | + | mRNA | nonsense_mediated_decay |
| -275135 | enst00000506654 | sg00000127022 | canx-212 | 5 | 179698984 | 179710062 | + | mRNA | protein_coding |
| -275142 | enst00000502673 | sg00000127022 | canx-205 | 5 | 179698977 | 179720494 | + | mRNA | protein_coding |
| -275142 | enst00000513246 | sg00000127022 | canx-217 | 5 | 179698977 | 179708256 | + | mRNA | protein_coding |
| -275151 | enst00000504579 | sg00000127022 | canx-208 | 5 | 179698968 | 179709059 | + | mRNA | nonsense_mediated_decay |
| -275152 | enst00000247461 | sg00000127022 | canx-201 | 5 | 179698967 | 179731641 | + | mRNA | protein_coding |
| -275163 | enst00000507307 | sg00000127022 | canx-213 | 5 | 179698956 | 179706322 | + | mRNA | protein_coding |
| -275175 | enst00000502498 | sg00000127022 | canx-204 | 5 | 179698944 | 179709036 | + | mRNA | protein_coding |
| -275213 | enst00000452673 | sg00000127022 | canx-202 | 5 | 179698906 | 179730925 | + | mRNA | protein_coding |
| -275702 | enst00000504734 | sg00000127022 | canx-209 | 5 | 179698417 | 179728907 | + | mRNA | protein_coding |
| -275713 | enst00000502296 | sg00000127022 | canx-203 | 5 | 179698406 | 179708336 | + | mRNA | protein_coding |
| -279922 | enst00000451823 | sg00000225051 | hmgb3p22-202 | 5 | 179694197 | 179694768 | + | pseudogenic_transcript | transcribed_processed_pseudogene |
| 282292 | enst00000523026 | sg00000253908 | ac104115.2-201 | 5 | 180257680 | 180258366 | + | pseudogenic_transcript | processed_pseudogene |
| 287701 | enst00000524170 | sg00000050748 | mapk9-212 | 5 | 180242728 | 180263089 | - | lnc_RNA | processed_transcript |
| 289454 | enst00000523135 | sg00000050748 | mapk9-210 | 5 | 180253507 | 180264842 | - | lnc_RNA | processed_transcript |
| -293085 | enst00000376974 | sg00000204659 | cby3-201 | 5 | 179678560 | 179681034 | - | mRNA | protein_coding |
| -295087 | enst00000442010 | sg00000225051 | hmgb3p22-201 | 5 | 179679032 | 179694649 | + | lnc_RNA | processed_transcript |
| -295491 | enst00000514383 | sg00000127022 | canx-219 | 5 | 179678628 | 179708366 | + | mRNA | protein_coding |
| 305193 | enst00000539014 | sg00000050748 | mapk9-213 | 5 | 180246545 | 180280581 | - | mRNA | protein_coding |
| 305193 | enst00000397072 | sg00000050748 | mapk9-205 | 5 | 180238309 | 180280581 | - | mRNA | protein_coding |
| -315854 | enst00000503428 | sg00000250999 | ac136604.3-204 | 5 | 179658265 | 179664430 | + | lnc_RNA | lncrna |
| -315883 | enst00000514793 | sg00000250999 | ac136604.3-203 | 5 | 179658236 | 179664432 | + | lnc_RNA | lncrna |
| -316081 | enst00000661598 | sg00000250999 | ac136604.3-202 | 5 | 179658038 | 179665136 | + | lnc_RNA | lncrna |
| -316357 | enst00000508188 | sg00000250999 | ac136604.3-201 | 5 | 179657762 | 179664430 | + | lnc_RNA | lncrna |
| 316579 | enst00000425491 | sg00000050748 | mapk9-206 | 5 | 180246028 | 180291967 | - | mRNA | protein_coding |
| 316649 | enst00000393362 | sg00000050748 | mapk9-204 | 5 | 180242578 | 180292037 | - | mRNA | nonsense_mediated_decay |
| 316665 | enst00000523583 | sg00000050748 | mapk9-211 | 5 | 180264781 | 180292053 | - | mRNA | protein_coding |
| 316668 | enst00000393360 | sg00000050748 | mapk9-203 | 5 | 180233594 | 180292056 | - | mRNA | protein_coding |
| 316683 | enst00000455781 | sg00000050748 | mapk9-208 | 5 | 180233594 | 180292071 | - | mRNA | protein_coding |
| 316704 | enst00000347470 | sg00000050748 | mapk9-202 | 5 | 180236187 | 180292092 | - | mRNA | protein_coding |
| 316711 | enst00000452135 | sg00000050748 | mapk9-207 | 5 | 180233143 | 180292099 | - | mRNA | protein_coding |
| 316711 | enst00000343111 | sg00000050748 | mapk9-201 | 5 | 180233594 | 180292099 | - | mRNA | protein_coding |
| 317857 | enst00000504573 | sg00000248367 | ac008610.1-201 | 5 | 180293245 | 180295253 | + | lnc_RNA | lncrna |
| -322822 | enst00000425471 | sg00000228259 | ac136604.1-202 | 5 | 179651297 | 179652290 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -322835 | enst00000418535 | sg00000228259 | ac136604.1-201 | 5 | 179651284 | 179652457 | + | pseudogenic_transcript | unprocessed_pseudogene |
| -329073 | enst00000625191 | sg00000204661 | c5orf60-208 | 5 | 179641544 | 179645046 | - | lnc_RNA | lncrna |
| -329073 | enst00000512899 | sg00000204661 | c5orf60-204 | 5 | 179641790 | 179645046 | - | lnc_RNA | lncrna |
| -329112 | enst00000513845 | sg00000204661 | c5orf60-206 | 5 | 179642935 | 179645007 | - | lnc_RNA | lncrna |
| -329112 | enst00000503358 | sg00000204661 | c5orf60-201 | 5 | 179644331 | 179645007 | - | lnc_RNA | retained_intron |
| -329112 | enst00000513142 | sg00000204661 | c5orf60-205 | 5 | 179643725 | 179645007 | - | lnc_RNA | retained_intron |
| -329112 | enst00000506142 | sg00000204661 | c5orf60-202 | 5 | 179642895 | 179645007 | - | lnc_RNA | lncrna |
| -329112 | enst00000511063 | sg00000204661 | c5orf60-203 | 5 | 179641546 | 179645007 | - | lnc_RNA | retained_intron |
| -329112 | enst00000514664 | sg00000204661 | c5orf60-207 | 5 | 179641544 | 179645007 | - | lnc_RNA | retained_intron |
| -339335 | enst00000521116 | sg00000169045 | hnrnph1-238 | 5 | 179620943 | 179634784 | - | mRNA | protein_coding |
| -339646 | enst00000518602 | sg00000169045 | hnrnph1-230 | 5 | 179633892 | 179634473 | - | lnc_RNA | processed_transcript |
| -339679 | enst00000522256 | sg00000169045 | hnrnph1-242 | 5 | 179623049 | 179634440 | - | mRNA | protein_coding |
| -344968 | enst00000366402 | sg00000273549 | ac136604.4-201 | 5 | 179629151 | 179629410 | + | ncRNA | misc_rna |
| 348976 | enst00000510122 | sg00000131459 | gfpt2-204 | 5 | 180318619 | 180324364 | - | lnc_RNA | retained_intron |
| 349098 | enst00000520165 | sg00000131459 | gfpt2-208 | 5 | 180316764 | 180324486 | - | lnc_RNA | processed_transcript |
| -349450 | enst00000523137 | sg00000169045 | hnrnph1-245 | 5 | 179618218 | 179624669 | - | mRNA | protein_coding |
| -349450 | enst00000356731 | sg00000169045 | hnrnph1-202 | 5 | 179614179 | 179624669 | - | mRNA | protein_coding |
| -349519 | enst00000513225 | sg00000169045 | hnrnph1-220 | 5 | 179619315 | 179624600 | - | mRNA | protein_coding |
| -349519 | enst00000503664 | sg00000169045 | hnrnph1-208 | 5 | 179621347 | 179624600 | - | mRNA | protein_coding |
| -349535 | enst00000505811 | sg00000169045 | hnrnph1-213 | 5 | 179618224 | 179624584 | - | mRNA | protein_coding |
| -349535 | enst00000515714 | sg00000169045 | hnrnph1-228 | 5 | 179621242 | 179624584 | - | mRNA | protein_coding |
| -349708 | enst00000512273 | sg00000169045 | hnrnph1-219 | 5 | 179621254 | 179624411 | - | mRNA | nonsense_mediated_decay |
| -350398 | enst00000442819 | sg00000169045 | hnrnph1-204 | 5 | 179614179 | 179623721 | - | mRNA | protein_coding |
| -350407 | enst00000505087 | sg00000169045 | hnrnph1-212 | 5 | 179621011 | 179623712 | - | lnc_RNA | retained_intron |
| -350409 | enst00000393432 | sg00000169045 | hnrnph1-203 | 5 | 179614178 | 179623710 | - | mRNA | protein_coding |
| -350409 | enst00000513972 | sg00000169045 | hnrnph1-222 | 5 | 179620675 | 179623710 | - | lnc_RNA | retained_intron |
| -350412 | enst00000515158 | sg00000169045 | hnrnph1-225 | 5 | 179620897 | 179623707 | - | mRNA | protein_coding |
| -350421 | enst00000510431 | sg00000169045 | hnrnph1-217 | 5 | 179618236 | 179623698 | - | mRNA | protein_coding |
| -350421 | enst00000508103 | sg00000169045 | hnrnph1-215 | 5 | 179618205 | 179623698 | - | mRNA | protein_coding |
| -350448 | enst00000504348 | sg00000169045 | hnrnph1-209 | 5 | 179619301 | 179623671 | - | mRNA | protein_coding |
| -350448 | enst00000503105 | sg00000169045 | hnrnph1-207 | 5 | 179617817 | 179623671 | - | mRNA | protein_coding |
| -350448 | enst00000514332 | sg00000169045 | hnrnph1-223 | 5 | 179614180 | 179623671 | - | lnc_RNA | retained_intron |
| -350449 | enst00000504779 | sg00000169045 | hnrnph1-211 | 5 | 179618045 | 179623670 | - | mRNA | nonsense_mediated_decay |
| -350449 | enst00000506721 | sg00000169045 | hnrnph1-214 | 5 | 179618208 | 179623670 | - | mRNA | protein_coding |
| -350449 | enst00000513230 | sg00000169045 | hnrnph1-221 | 5 | 179622952 | 179623670 | - | lnc_RNA | retained_intron |
| -350449 | enst00000519707 | sg00000169045 | hnrnph1-234 | 5 | 179620773 | 179623670 | - | lnc_RNA | retained_intron |
| -350450 | enst00000519056 | sg00000169045 | hnrnph1-232 | 5 | 179618239 | 179623669 | - | mRNA | protein_coding |
| -350450 | enst00000514731 | sg00000169045 | hnrnph1-224 | 5 | 179616764 | 179623669 | - | lnc_RNA | retained_intron |
| -350451 | enst00000519455 | sg00000169045 | hnrnph1-233 | 5 | 179620814 | 179623668 | - | lnc_RNA | processed_transcript |
| -350473 | enst00000515446 | sg00000169045 | hnrnph1-226 | 5 | 179622849 | 179623646 | - | lnc_RNA | retained_intron |
| -350950 | enst00000510411 | sg00000169045 | hnrnph1-216 | 5 | 179614181 | 179623169 | - | mRNA | protein_coding |
| -350950 | enst00000510678 | sg00000169045 | hnrnph1-218 | 5 | 179614181 | 179623169 | - | mRNA | nonsense_mediated_decay |
| -350951 | enst00000329433 | sg00000169045 | hnrnph1-201 | 5 | 179614181 | 179623168 | - | mRNA | protein_coding |
| -350955 | enst00000524180 | sg00000169045 | hnrnph1-249 | 5 | 179619469 | 179623164 | - | lnc_RNA | processed_transcript |
| -350986 | enst00000630639 | sg00000169045 | hnrnph1-250 | 5 | 179621951 | 179623133 | - | mRNA | protein_coding |
| -352433 | enst00000519943 | sg00000169045 | hnrnph1-235 | 5 | 179620733 | 179621686 | - | lnc_RNA | retained_intron |
| -352608 | enst00000521790 | sg00000169045 | hnrnph1-241 | 5 | 179619273 | 179621511 | - | mRNA | protein_coding |
| -352658 | enst00000518548 | sg00000169045 | hnrnph1-229 | 5 | 179618161 | 179621461 | - | lnc_RNA | processed_transcript |
| -352749 | enst00000522958 | sg00000169045 | hnrnph1-243 | 5 | 179619101 | 179621370 | - | lnc_RNA | retained_intron |
| -352784 | enst00000519958 | sg00000169045 | hnrnph1-236 | 5 | 179615560 | 179621335 | - | mRNA | nonsense_mediated_decay |
| -353160 | enst00000521173 | sg00000169045 | hnrnph1-239 | 5 | 179616869 | 179620959 | - | mRNA | protein_coding |
| -354087 | enst00000515481 | sg00000169045 | hnrnph1-227 | 5 | 179614180 | 179620032 | - | lnc_RNA | retained_intron |
| -354411 | enst00000520415 | sg00000169045 | hnrnph1-237 | 5 | 179618144 | 179619708 | - | lnc_RNA | retained_intron |
| -355220 | enst00000502904 | sg00000169045 | hnrnph1-206 | 5 | 179614179 | 179618899 | - | lnc_RNA | retained_intron |
| 355546 | enst00000518185 | sg00000131459 | gfpt2-206 | 5 | 180318844 | 180330934 | - | lnc_RNA | processed_transcript |
| -355604 | enst00000504549 | sg00000169045 | hnrnph1-210 | 5 | 179616158 | 179618515 | - | lnc_RNA | retained_intron |
| -355666 | enst00000502632 | sg00000169045 | hnrnph1-205 | 5 | 179614890 | 179618453 | - | lnc_RNA | retained_intron |
| -355818 | enst00000523921 | sg00000169045 | hnrnph1-247 | 5 | 179616874 | 179618301 | - | mRNA | protein_coding |
| -356076 | enst00000519033 | sg00000169045 | hnrnph1-231 | 5 | 179614686 | 179618043 | - | mRNA | protein_coding |
| 356260 | enst00000518906 | sg00000131459 | gfpt2-207 | 5 | 180318809 | 180331648 | - | mRNA | protein_coding |
| -356485 | enst00000521720 | sg00000169045 | hnrnph1-240 | 5 | 179614877 | 179617634 | - | lnc_RNA | retained_intron |
| -356538 | enst00000523449 | sg00000169045 | hnrnph1-246 | 5 | 179614519 | 179617581 | - | mRNA | protein_coding |
| -357195 | enst00000523136 | sg00000169045 | hnrnph1-244 | 5 | 179616141 | 179616924 | - | mRNA | protein_coding |
| -357832 | enst00000524179 | sg00000169045 | hnrnph1-248 | 5 | 179614524 | 179616287 | - | lnc_RNA | retained_intron |
| -366853 | enst00000508797 | sg00000176783 | rufy1-212 | 5 | 179607266 | 179609970 | + | lnc_RNA | processed_transcript |
| -367216 | enst00000503583 | sg00000176783 | rufy1-209 | 5 | 179606903 | 179609472 | + | lnc_RNA | retained_intron |
| -370378 | enst00000500262 | sg00000244945 | ac136604.2-201 | 5 | 179595904 | 179603741 | - | lnc_RNA | lncrna |
| 377512 | enst00000503228 | sg00000131459 | gfpt2-202 | 5 | 180338573 | 180352900 | - | mRNA | protein_coding |
| -377559 | enst00000502531 | sg00000176783 | rufy1-206 | 5 | 179596560 | 179606584 | + | lnc_RNA | retained_intron |
| 377948 | enst00000503546 | sg00000131459 | gfpt2-203 | 5 | 180335869 | 180353336 | - | lnc_RNA | retained_intron |
| 377948 | enst00000518158 | sg00000131459 | gfpt2-205 | 5 | 180331412 | 180353336 | - | lnc_RNA | retained_intron |
| 377948 | enst00000253778 | sg00000131459 | gfpt2-201 | 5 | 180300698 | 180353336 | - | mRNA | protein_coding |
| -384756 | enst00000509797 | sg00000176783 | rufy1-213 | 5 | 179589363 | 179593613 | + | lnc_RNA | retained_intron |
| -397006 | enst00000502434 | sg00000176783 | rufy1-205 | 5 | 179577113 | 179607628 | + | mRNA | protein_coding |
| -401963 | enst00000515779 | sg00000249140 | prdx2p3-201 | 5 | 179572156 | 179572741 | + | pseudogenic_transcript | processed_pseudogene |
| -406609 | enst00000514238 | sg00000176783 | rufy1-214 | 5 | 179567510 | 179590958 | + | lnc_RNA | processed_transcript |
| -411488 | enst00000508609 | sg00000176783 | rufy1-211 | 5 | 179562631 | 179594898 | + | mRNA | protein_coding |
| -414378 | enst00000503514 | sg00000176783 | rufy1-208 | 5 | 179559741 | 179567562 | + | lnc_RNA | processed_transcript |
| -414427 | enst00000393438 | sg00000176783 | rufy1-202 | 5 | 179559692 | 179610012 | + | mRNA | protein_coding |
| -414427 | enst00000437570 | sg00000176783 | rufy1-204 | 5 | 179559692 | 179610011 | + | mRNA | protein_coding |
| -414427 | enst00000507569 | sg00000176783 | rufy1-210 | 5 | 179559692 | 179562922 | + | lnc_RNA | retained_intron |
| -423281 | enst00000502984 | sg00000176783 | rufy1-207 | 5 | 179550838 | 179569382 | + | mRNA | protein_coding |
| -423283 | enst00000393448 | sg00000176783 | rufy1-203 | 5 | 179550836 | 179602571 | + | mRNA | nonsense_mediated_decay |
| -423565 | enst00000319449 | sg00000176783 | rufy1-201 | 5 | 179550554 | 179610012 | + | mRNA | protein_coding |
| 441561 | enst00000662761 | sg00000250509 | ac034213.1-201 | 5 | 180416949 | 180443240 | + | lnc_RNA | lncrna |
| -446606 | enst00000521868 | sg00000253520 | ac136628.3-201 | 5 | 179527224 | 179527513 | - | pseudogenic_transcript | processed_pseudogene |
| -451662 | enst00000505650 | sg00000251545 | ac136628.2-201 | 5 | 179522457 | 179525074 | + | pseudogenic_transcript | unprocessed_pseudogene |
| 457503 | enst00000507681 | sg00000250509 | ac034213.1-202 | 5 | 180432891 | 180443238 | + | lnc_RNA | lncrna |
| -458540 | enst00000520758 | sg00000253652 | ac136628.4-201 | 5 | 179503322 | 179515579 | - | lnc_RNA | lncrna |
| 469121 | enst00000363685 | sg00000200555 | rnu6-525p-201 | 5 | 180444509 | 180444612 | + | snRNA | snrna |
| -481962 | enst00000621047 | sg00000274716 | ac136628.5-201 | 5 | 179492076 | 179492157 | - | snRNA | snrna |
Source file: /hps/research1/birney/users/adrien/analyses/cancer_DNA_promethion/run_1_2_3_4/DNA_pipeline_2/results/methylation/pycometh_meth_comp_CGI_3/out.tsv.gz
MD5 hash: 9aa0e3f69cb4e12345c3758eb68a5efc